Wall clock time and date at job start Wed Apr 1 2020 04:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00464 * 2 1 4 4 O 1.20829 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46883 * 180.02562 * 5 3 2 7 7 C 1.36918 * 119.99804 * 263.72241 * 6 5 3 8 8 H 1.07997 * 119.99763 * 353.44096 * 7 6 5 9 9 C 1.39019 * 119.99923 * 173.43323 * 7 6 5 10 10 N 1.31379 * 119.99914 * 92.62435 * 9 7 6 11 11 Si 1.86797 * 120.00105 * 272.62489 * 9 7 6 12 12 H 1.48505 * 109.47080 * 5.02043 * 11 9 7 13 13 H 1.48502 * 109.47317 * 125.01866 * 11 9 7 14 14 H 1.48495 * 109.47586 * 245.02179 * 11 9 7 15 15 C 1.34772 * 120.00302 * 83.72697 * 6 5 3 16 16 O 1.21616 * 120.00096 * 183.61623 * 15 6 5 17 17 C 1.47610 * 120.00192 * 3.62021 * 15 6 5 18 18 C 1.41544 * 126.52557 * 174.57140 * 17 15 6 19 19 C 1.35347 * 105.50247 * 180.24501 * 18 17 15 20 20 N 1.35052 * 107.23904 * 359.63667 * 19 18 17 21 21 C 1.46504 * 124.87941 * 180.14517 * 20 19 18 22 22 C 1.52998 * 109.47244 * 123.55938 * 21 20 19 23 23 N 1.46500 * 109.47450 * 185.06498 * 22 21 20 24 24 C 1.34948 * 126.03871 * 124.71239 * 23 22 21 25 25 C 1.35316 * 107.74206 * 179.84314 * 24 23 22 26 26 C 1.39865 * 107.92572 * 0.42213 * 25 24 23 27 27 N 1.30842 * 108.20189 * 359.73957 * 26 25 24 28 28 N 1.28469 * 110.24388 * 0.38009 * 20 19 18 29 29 H 1.09002 * 109.46968 * 299.99908 * 1 2 3 30 30 H 1.09003 * 109.46854 * 59.99156 * 1 2 3 31 31 H 1.08996 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47134 * 60.00102 * 5 3 2 33 33 H 1.09004 * 109.46884 * 299.99679 * 5 3 2 34 34 H 0.97006 * 120.00078 * 184.91084 * 10 9 7 35 35 H 1.08000 * 127.25303 * 359.97438 * 18 17 15 36 36 H 1.07994 * 126.38202 * 179.77331 * 19 18 17 37 37 H 1.09004 * 109.47342 * 243.56022 * 21 20 19 38 38 H 1.09004 * 109.46835 * 3.55773 * 21 20 19 39 39 H 1.09004 * 109.46961 * 305.06623 * 22 21 20 40 40 H 1.09004 * 109.47230 * 65.06389 * 22 21 20 41 41 H 1.08001 * 126.12373 * 0.02562 * 24 23 22 42 42 H 1.08006 * 126.03778 * 180.16064 * 25 24 23 43 43 H 1.07996 * 125.90524 * 179.71073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.2998 3.3000 -1.1782 8 1 4.3473 2.7287 -2.0935 9 6 4.5612 4.6652 -1.1965 10 7 5.7945 5.0996 -1.0690 11 14 3.1590 5.8821 -1.4022 12 1 1.8659 5.1518 -1.4026 13 1 3.1781 6.8539 -0.2795 14 1 3.3179 6.6079 -2.6879 15 6 4.0511 3.3612 1.1607 16 8 4.3320 4.5444 1.1551 17 6 3.7861 2.6716 2.4387 18 6 3.9239 3.2201 3.7362 19 6 3.5791 2.2261 4.5876 20 7 3.2479 1.1532 3.8372 21 6 2.8104 -0.1393 4.3704 22 6 1.4437 -0.4971 3.7830 23 7 0.9514 -1.7281 4.4062 24 6 -0.2320 -1.8804 5.0368 25 6 -0.3084 -3.1613 5.4663 26 6 0.8725 -3.8116 5.0937 27 7 1.6285 -2.9534 4.4582 28 7 3.3763 1.4274 2.5887 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.9557 0.7807 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 5.9697 6.0519 -1.0101 35 1 4.2419 4.2198 3.9931 36 1 3.5684 2.2813 5.6661 37 1 3.5345 -0.9078 4.1000 38 1 2.7344 -0.0775 5.4560 39 1 0.7416 0.3140 3.9762 40 1 1.5385 -0.6471 2.7075 41 1 -0.9844 -1.1175 5.1716 42 1 -1.1337 -3.6025 6.0057 43 1 1.1182 -4.8436 5.2961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360964522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:47 Heat of formation + Delta-G solvation = 76.189585 kcal Electronic energy + Delta-G solvation = -31450.548018 eV Core-core repulsion = 27115.631629 eV Total energy + Delta-G solvation = -4334.916390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.54999 -42.00469 -41.46506 -39.90841 -37.44302 -36.23995 -35.96713 -34.75212 -33.12683 -31.65504 -31.03011 -30.15606 -29.41794 -27.91358 -27.01414 -25.20816 -23.51887 -22.43334 -22.13740 -21.90019 -21.45433 -21.07631 -19.14216 -18.65460 -18.52745 -18.14344 -17.59384 -17.31907 -17.10447 -16.86001 -16.65711 -16.10093 -15.93497 -15.41222 -15.11264 -14.79347 -14.70673 -14.57520 -14.43509 -14.34582 -14.10951 -13.97038 -13.75538 -13.62244 -13.34882 -13.31992 -13.01619 -12.91594 -12.67644 -12.61172 -12.11961 -11.77779 -11.65873 -11.57281 -11.50049 -10.98451 -10.47140 -10.37473 -10.10009 -9.95268 -9.75346 -9.51373 -9.02161 -5.47898 0.69805 0.96932 1.14552 1.23634 1.29386 1.34228 1.42760 1.56679 1.74321 1.88080 2.00188 2.15307 2.51061 2.95910 3.09808 3.26678 3.42097 3.73642 3.92413 4.01303 4.05842 4.06222 4.14975 4.19918 4.25985 4.28245 4.33206 4.43397 4.52975 4.59885 4.63046 4.76015 4.83903 4.90574 4.91952 5.19347 5.25470 5.36276 5.41885 5.75379 5.86578 5.98829 6.08380 6.63384 6.78053 6.86074 6.96269 7.17575 7.42921 7.98192 8.21531 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003529 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.385383 B = 7932.838990 C = 8896.838233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.535 6.535 5 C 0.111 3.889 6 N -0.383 5.383 7 C -0.540 4.540 8 H 0.104 0.896 9 C 0.227 3.773 10 N -0.703 5.703 11 Si 0.837 3.163 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.457 3.543 16 O -0.610 6.610 17 C 0.002 3.998 18 C -0.221 4.221 19 C 0.018 3.982 20 N -0.291 5.291 21 C 0.121 3.879 22 C 0.130 3.870 23 N -0.380 5.380 24 C 0.053 3.947 25 C -0.279 4.279 26 C 0.042 3.958 27 N -0.333 5.333 28 N -0.302 5.302 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.288 0.712 35 H 0.149 0.851 36 H 0.230 0.770 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.200 0.800 42 H 0.170 0.830 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -18.067 15.840 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.423 6.423 5 C -0.015 4.015 6 N -0.098 5.098 7 C -0.654 4.654 8 H 0.121 0.879 9 C -0.008 4.008 10 N -0.323 5.323 11 Si 0.658 3.342 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.191 1.191 15 C 0.251 3.749 16 O -0.499 6.499 17 C -0.157 4.157 18 C -0.250 4.250 19 C -0.126 4.126 20 N -0.078 5.078 21 C 0.001 3.999 22 C 0.007 3.993 23 N -0.163 5.163 24 C -0.092 4.092 25 C -0.308 4.308 26 C -0.144 4.144 27 N -0.155 5.155 28 N -0.137 5.137 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.246 0.754 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.217 0.783 42 H 0.187 0.813 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.958 -17.952 14.557 25.167 hybrid contribution -1.465 1.831 0.348 2.371 sum -11.423 -16.121 14.905 24.750 Atomic orbital electron populations 1.23429 0.75769 1.05136 1.01889 1.86501 1.24198 1.32380 1.84261 1.24615 0.92815 0.81225 0.70842 1.90667 1.67435 1.37900 1.46281 1.21461 0.87218 0.85273 1.07595 1.43134 1.52366 1.08843 1.05417 1.18205 1.66512 0.93178 0.87479 0.87898 1.25009 0.93940 0.98291 0.83563 1.70699 1.24484 1.18561 1.18600 0.87582 0.88618 0.81035 0.76976 1.21467 1.21863 1.19145 1.16958 0.88824 0.86912 0.82169 1.90469 1.58385 1.16372 1.84638 1.22138 1.06101 0.91738 0.95688 1.21853 1.10470 1.01918 0.90721 1.23302 1.03407 0.85612 1.00252 1.45615 1.47239 1.12104 1.02807 1.22228 0.96281 0.80687 1.00709 1.21757 0.95946 0.83205 0.98398 1.48540 1.14493 1.08659 1.44563 1.23180 0.89849 1.00144 0.96015 1.21874 1.02127 0.94075 1.12698 1.24461 0.93073 1.00597 0.96270 1.77393 1.22347 0.91142 1.24594 1.73460 1.22387 1.16386 1.01467 0.92729 0.92836 0.84806 0.85674 0.83875 0.89961 0.83327 0.75361 0.88074 0.84456 0.87090 0.89970 0.78341 0.81291 0.77758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.36 -11.61 10.56 -51.37 -0.54 -12.15 16 3 C 0.46 19.23 7.09 71.24 0.51 19.73 16 4 O -0.53 -26.95 16.03 21.96 0.35 -26.60 16 5 C 0.11 4.73 5.58 85.63 0.48 5.21 16 6 N -0.38 -20.71 2.18 -643.11 -1.40 -22.11 16 7 C -0.54 -31.62 9.48 84.09 0.80 -30.82 16 8 H 0.10 5.86 7.99 -2.91 -0.02 5.84 16 9 C 0.23 13.43 3.01 84.95 0.26 13.69 16 10 N -0.70 -40.95 13.53 21.68 0.29 -40.66 16 11 Si 0.84 46.82 28.28 68.60 1.94 48.76 16 12 H -0.29 -17.40 7.11 99.48 0.71 -16.70 16 13 H -0.29 -17.09 7.11 99.48 0.71 -16.38 16 14 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 15 C 0.46 25.59 7.36 86.72 0.64 26.23 16 16 O -0.61 -38.37 12.97 -4.08 -0.05 -38.42 16 17 C 0.00 0.10 6.81 42.43 0.29 0.39 16 18 C -0.22 -8.13 10.81 22.42 0.24 -7.89 16 19 C 0.02 0.44 11.40 83.53 0.95 1.39 16 20 N -0.29 -7.58 3.39 -347.94 -1.18 -8.76 16 21 C 0.12 2.13 6.58 86.38 0.57 2.69 16 22 C 0.13 2.33 6.63 86.38 0.57 2.91 16 23 N -0.38 -6.53 3.68 -348.05 -1.28 -7.81 16 24 C 0.05 0.68 11.45 83.54 0.96 1.63 16 25 C -0.28 -3.38 10.80 21.99 0.24 -3.15 16 26 C 0.04 0.62 12.03 85.23 1.02 1.65 16 27 N -0.33 -6.72 12.42 -57.03 -0.71 -7.43 16 28 N -0.30 -10.87 7.58 -48.20 -0.37 -11.24 16 29 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.13 4.77 7.94 -2.39 -0.02 4.75 16 33 H 0.14 5.63 5.34 -2.38 -0.01 5.61 16 34 H 0.29 15.51 8.32 -92.70 -0.77 14.74 16 35 H 0.15 5.52 8.06 -2.91 -0.02 5.50 16 36 H 0.23 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.14 1.49 8.04 -2.39 -0.02 1.47 16 39 H 0.11 1.74 8.07 -2.38 -0.02 1.72 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -88.04 378.20 6.81 -81.23 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.04 Total: 9.56 kcal Atomic # 6 Polarization: 26.92 SS G_CDS: 8.71 Total: 35.63 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -4.64 Total: -98.01 kcal Atomic # 8 Polarization: -76.93 SS G_CDS: -0.24 Total: -77.18 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.94 Total: 48.76 kcal Total: -88.04 6.81 -81.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360964522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.424 kcal (2) G-P(sol) polarization free energy of solvation -88.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds