Wall clock time and date at job start Wed Apr 1 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34730 * 117.00086 * 2 1 4 4 O 1.21488 * 119.99935 * 0.02562 * 3 2 1 5 5 C 1.47582 * 120.00131 * 179.97438 * 3 2 1 6 6 C 1.41548 * 126.52523 * 180.02562 * 5 3 2 7 7 C 1.35350 * 105.50201 * 179.97438 * 6 5 3 8 8 N 1.35048 * 107.24323 * 0.02562 * 7 6 5 9 9 C 1.46494 * 124.88160 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47222 * 124.99350 * 9 8 7 11 11 C 1.52999 * 109.47074 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46862 * 180.02562 * 11 10 9 13 13 O 1.21298 * 119.99991 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99902 * 180.02562 * 12 11 10 15 15 C 1.40589 * 120.00197 * 179.97438 * 14 12 11 16 16 C 1.40649 * 126.08397 * 359.69426 * 15 14 12 17 17 N 1.30908 * 108.39049 * 179.81266 * 16 15 14 18 18 N 1.40068 * 108.40470 * 0.44145 * 17 16 15 19 19 C 1.37323 * 126.07118 * 179.69714 * 18 17 16 20 20 H 1.07993 * 120.00494 * 180.02562 * 19 18 17 21 21 C 1.38993 * 119.99616 * 0.02562 * 19 18 17 22 22 N 1.31295 * 120.00204 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47097 * 60.00542 * 23 21 19 25 25 H 1.48496 * 109.47296 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47484 * 300.00271 * 23 21 19 27 27 C 1.35686 * 126.08235 * 179.97438 * 15 14 12 28 28 N 1.28474 * 110.23722 * 359.97438 * 8 7 6 29 29 H 1.09005 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47138 * 299.99560 * 1 2 3 31 31 H 1.08995 * 109.47306 * 60.00244 * 1 2 3 32 32 H 1.07997 * 127.24702 * 359.97438 * 6 5 3 33 33 H 1.07999 * 126.37808 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.47173 * 244.99862 * 9 8 7 35 35 H 1.09003 * 109.47156 * 4.99960 * 9 8 7 36 36 H 1.08994 * 109.47465 * 300.00334 * 10 9 8 37 37 H 1.09003 * 109.46557 * 60.00243 * 10 9 8 38 38 H 1.09003 * 109.47084 * 300.00695 * 11 10 9 39 39 H 1.09002 * 109.47253 * 60.00098 * 11 10 9 40 40 H 0.97006 * 120.00039 * 359.97438 * 14 12 11 41 41 H 1.08006 * 125.80152 * 359.96400 * 16 15 14 42 42 H 0.96995 * 120.00157 * 180.02562 * 22 21 19 43 43 H 1.07993 * 126.24368 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.3192 2.4577 0.0012 7 6 5.6063 2.0389 0.0021 8 7 5.5879 0.6886 0.0015 9 6 6.7782 -0.1655 0.0028 10 6 6.7087 -1.1355 1.1840 11 6 7.9521 -2.0270 1.1856 12 6 7.8833 -2.9827 2.3488 13 8 6.9330 -2.9540 3.1020 14 7 8.8778 -3.8695 2.5520 15 6 8.8139 -4.7608 3.6374 16 6 7.7810 -4.8345 4.5891 17 7 8.0708 -5.7859 5.4403 18 7 9.3000 -6.3482 5.0734 19 6 9.9472 -7.3709 5.7223 20 1 10.8963 -7.7300 5.3527 21 6 9.3808 -7.9437 6.8549 22 7 8.2267 -7.5075 7.3041 23 14 10.2607 -9.3352 7.7373 24 1 11.5910 -8.8648 8.2004 25 1 9.4547 -9.7677 8.9070 26 1 10.4365 -10.4789 6.8065 27 6 9.7404 -5.6994 3.9562 28 7 4.3766 0.2606 0.0008 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.9635 3.4774 0.0009 33 1 6.4845 2.6676 0.0032 34 1 6.8214 -0.7298 -0.9287 35 1 7.6701 0.4545 0.0938 36 1 6.6655 -0.5712 2.1155 37 1 5.8168 -1.7554 1.0930 38 1 7.9958 -2.5913 0.2541 39 1 8.8438 -1.4067 1.2768 40 1 9.6376 -3.8927 1.9494 41 1 6.8976 -4.2135 4.6121 42 1 7.8316 -7.9070 8.0947 43 1 10.6586 -5.8972 3.4231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362082448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:40 Heat of formation + Delta-G solvation = 44.977139 kcal Electronic energy + Delta-G solvation = -28215.471287 eV Core-core repulsion = 23879.201425 eV Total energy + Delta-G solvation = -4336.269863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.00231 -40.31380 -39.95009 -38.71142 -36.64514 -35.53392 -34.20795 -33.17137 -32.17046 -31.13219 -30.24998 -28.77070 -27.95055 -26.95096 -24.95725 -24.10998 -22.39291 -21.75962 -20.98354 -20.48009 -20.09981 -19.41756 -18.22298 -17.61707 -17.38830 -16.84857 -16.69944 -16.31569 -15.92083 -15.65288 -15.43246 -15.20502 -14.45669 -14.19573 -14.05635 -13.88433 -13.56655 -13.43958 -13.38117 -13.18006 -12.93830 -12.42724 -12.35829 -12.28382 -11.91946 -11.67360 -11.43145 -11.28227 -11.23469 -11.02094 -11.01375 -10.97317 -10.93802 -10.56907 -10.16702 -9.62195 -9.42480 -9.21340 -9.16993 -8.81084 -8.06825 -6.71368 -6.56258 -4.23774 1.09750 1.76061 1.98024 2.57421 2.81318 2.93294 3.03079 3.03751 3.08123 3.54109 3.66616 3.85188 3.99026 4.40141 4.42292 4.48531 4.49944 4.67260 4.81096 4.86497 4.88620 4.96177 4.96789 5.01213 5.09739 5.23656 5.25636 5.30589 5.39118 5.46363 5.78686 5.96456 6.07234 6.11307 6.22677 6.40465 6.45228 6.89083 6.94769 7.11302 7.23618 7.37248 7.70407 7.84945 8.16471 8.27829 8.62537 8.84591 9.37096 9.66424 10.39685 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.001657 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.528077 B =16889.918513 C =18090.183519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.559 3.441 4 O -0.504 6.504 5 C -0.015 4.015 6 C -0.175 4.175 7 C -0.017 4.017 8 N -0.271 5.271 9 C 0.117 3.883 10 C -0.119 4.119 11 C -0.132 4.132 12 C 0.496 3.504 13 O -0.534 6.534 14 N -0.625 5.625 15 C -0.062 4.062 16 C -0.033 4.033 17 N -0.261 5.261 18 N -0.142 5.142 19 C -0.324 4.324 20 H 0.116 0.884 21 C 0.046 3.954 22 N -0.770 5.770 23 Si 0.935 3.065 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.085 4.085 28 N -0.223 5.223 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.165 0.835 33 H 0.187 0.813 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.396 0.604 41 H 0.176 0.824 42 H 0.275 0.725 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 15.984 -17.390 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.401 3.599 4 O -0.390 6.390 5 C -0.172 4.172 6 C -0.203 4.203 7 C -0.158 4.158 8 N -0.061 5.061 9 C -0.002 4.002 10 C -0.157 4.157 11 C -0.173 4.173 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.268 5.268 15 C -0.167 4.167 16 C -0.209 4.209 17 N -0.092 5.092 18 N 0.090 4.910 19 C -0.456 4.456 20 H 0.133 0.867 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.236 4.236 28 N -0.061 5.061 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.204 0.796 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.229 0.771 41 H 0.192 0.808 42 H 0.086 0.914 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.459 14.393 -15.618 21.518 hybrid contribution 1.054 0.731 -0.715 1.469 sum -2.404 15.124 -16.333 22.390 Atomic orbital electron populations 1.23336 0.75791 1.04067 1.02582 1.86668 1.23501 1.31887 1.83702 1.19597 0.86352 0.81644 0.72294 1.90850 1.65573 1.36143 1.46443 1.20723 0.90925 0.91375 1.14207 1.21724 0.90998 0.99292 1.08264 1.22953 1.00041 0.84681 1.08164 1.45754 1.05327 1.05675 1.49318 1.22232 0.82739 0.93359 1.01886 1.21610 0.99575 0.97299 0.97226 1.21480 0.99461 0.97843 0.98539 1.20247 0.82929 0.81887 0.86773 1.90628 1.32993 1.70367 1.47139 1.42527 1.22436 1.33915 1.27888 1.17283 1.01071 1.01642 0.96726 1.24115 1.00661 1.01094 0.95009 1.78261 0.97445 1.11598 1.21893 1.44547 1.12060 1.20107 1.14299 1.19819 1.05141 1.10905 1.09773 0.86677 1.25646 0.95833 0.98783 0.96883 1.70205 1.13762 1.35958 1.19706 0.85894 0.79282 0.80042 0.78918 1.19172 1.20130 1.19159 1.21256 1.02158 1.02679 0.97494 1.73717 0.89833 1.26513 1.15997 0.87737 0.91669 0.91790 0.81753 0.79633 0.88352 0.87416 0.90090 0.88960 0.88745 0.88898 0.77068 0.80770 0.91386 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.22 10.58 -40.57 -0.43 -4.65 16 3 C 0.56 7.31 7.97 34.54 0.28 7.59 16 4 O -0.50 -7.16 16.72 -19.26 -0.32 -7.48 16 5 C -0.02 -0.19 7.17 -82.79 -0.59 -0.78 16 6 C -0.18 -1.68 10.81 -39.35 -0.43 -2.10 16 7 C -0.02 -0.12 11.40 -17.17 -0.20 -0.32 16 8 N -0.27 -2.49 3.41 -61.33 -0.21 -2.70 16 9 C 0.12 0.72 6.40 -4.04 -0.03 0.69 16 10 C -0.12 -1.14 4.61 -26.73 -0.12 -1.26 16 11 C -0.13 -1.16 5.70 -27.88 -0.16 -1.32 16 12 C 0.50 7.81 7.80 -10.98 -0.09 7.72 16 13 O -0.53 -11.00 13.13 5.54 0.07 -10.93 16 14 N -0.63 -10.32 5.47 -10.00 -0.05 -10.38 16 15 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 16 C -0.03 -0.88 10.85 -17.04 -0.18 -1.06 16 17 N -0.26 -7.62 10.40 30.80 0.32 -7.30 16 18 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 19 C -0.32 -8.55 10.25 -14.81 -0.15 -8.70 16 20 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.59 11.81 55.50 0.66 -20.93 16 23 Si 0.93 18.86 29.55 -169.99 -5.02 13.84 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 28 N -0.22 -2.78 11.68 33.41 0.39 -2.39 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.19 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.29 8.04 -51.93 -0.42 -0.13 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.40 4.76 8.83 -40.82 -0.36 4.40 16 41 H 0.18 4.59 5.92 -52.48 -0.31 4.28 16 42 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -38.59 383.27 -5.61 -44.20 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.28 Total: 8.12 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.46 Total: -1.23 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.06 Total: -47.64 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.68 Total: -23.06 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.59 -5.61 -44.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362082448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.175 kcal (2) G-P(sol) polarization free energy of solvation -38.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds