Wall clock time and date at job start Wed Apr 1 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48500 * 109.46888 * 269.99043 * 3 2 1 5 5 H 1.48491 * 109.47300 * 29.99235 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99677 * 3 2 1 7 7 C 1.38650 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00007 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99935 * 185.06193 * 9 7 2 11 11 C 1.38899 * 120.06818 * 354.48449 * 10 9 7 12 12 C 1.38075 * 119.92619 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.07335 * 0.02562 * 12 11 10 14 14 C 1.38274 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96527 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46983 * 90.00597 * 15 14 13 17 17 O 1.21282 * 120.00119 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99804 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00092 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.02158 * 34.28986 * 19 18 16 21 21 C 1.54318 * 110.03790 * 272.89237 * 19 18 16 22 22 C 1.55066 * 104.23033 * 217.26003 * 21 19 18 23 23 C 1.54286 * 102.74278 * 37.26047 * 22 21 19 24 24 C 1.53649 * 104.88485 * 322.76229 * 23 22 21 25 25 O 1.43076 * 110.25351 * 81.89559 * 23 22 21 26 26 C 1.44952 * 104.60192 * 98.11356 * 25 23 22 27 27 C 1.54964 * 101.82424 * 35.41189 * 26 25 23 28 28 O 1.42681 * 110.47822 * 203.23737 * 23 22 21 29 29 C 1.38119 * 120.06910 * 0.02562 * 14 13 12 30 30 H 0.97001 * 120.00188 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.03258 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.96003 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.92942 * 180.27661 * 13 12 11 34 34 H 1.09005 * 109.47038 * 210.00112 * 15 14 13 35 35 H 1.08992 * 109.47267 * 329.99998 * 15 14 13 36 36 H 0.96996 * 120.00047 * 359.97438 * 18 16 15 37 37 H 1.09004 * 110.46834 * 335.93020 * 21 19 18 38 38 H 1.08998 * 110.47224 * 98.52856 * 21 19 18 39 39 H 1.09000 * 110.72581 * 278.95713 * 22 21 19 40 40 H 1.09000 * 110.93134 * 155.65633 * 22 21 19 41 41 H 1.09005 * 110.05886 * 263.74852 * 24 23 22 42 42 H 1.08992 * 110.06362 * 142.23968 * 24 23 22 43 43 H 1.09001 * 110.95506 * 277.27507 * 26 25 23 44 44 H 1.08999 * 110.95599 * 153.54620 * 26 25 23 45 45 H 1.09006 * 110.69186 * 206.42646 * 27 26 25 46 46 H 1.08998 * 110.69316 * 83.23431 * 27 26 25 47 47 H 1.08007 * 120.03796 * 179.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.6998 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4573 -3.4394 0.0959 12 6 4.2022 -4.5968 0.2057 13 6 3.5683 -5.8202 0.3270 14 6 2.1873 -5.8884 0.3392 15 6 1.5007 -7.2233 0.4720 16 6 1.2774 -7.5304 1.9304 17 8 1.6405 -6.7430 2.7784 18 7 0.6751 -8.6805 2.2924 19 6 0.4585 -8.9792 3.7101 20 1 0.2540 -8.0596 4.2583 21 6 1.7010 -9.6803 4.2985 22 6 1.1178 -10.7243 5.2857 23 6 -0.1497 -11.2132 4.5545 24 6 -0.7176 -9.9609 3.8689 25 8 0.1908 -12.2085 3.5847 26 6 -0.0832 -13.4700 4.2440 27 6 -1.3312 -13.1199 5.0933 28 8 -1.0868 -11.7520 5.4858 29 6 1.4365 -4.7343 0.2297 30 1 -0.4850 0.8400 -0.0004 31 1 3.9528 -2.4845 0.0016 32 1 5.2811 -4.5467 0.1969 33 1 4.1533 -6.7236 0.4172 34 1 0.5409 -7.1911 -0.0436 35 1 2.1253 -7.9988 0.0289 36 1 0.3851 -9.3103 1.6142 37 1 2.2680 -10.1759 3.5105 38 1 2.3286 -8.9631 4.8276 39 1 0.8595 -10.2552 6.2351 40 1 1.8162 -11.5468 5.4401 41 1 -1.4954 -9.5153 4.4892 42 1 -1.1220 -10.2210 2.8908 43 1 0.7508 -13.7665 4.8802 44 1 -0.3125 -14.2484 3.5164 45 1 -1.3949 -13.7662 5.9688 46 1 -2.2381 -13.1923 4.4932 47 1 0.3578 -4.7882 0.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435702703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:58 Heat of formation + Delta-G solvation = -126.683530 kcal Electronic energy + Delta-G solvation = -29731.109331 eV Core-core repulsion = 25458.643295 eV Total energy + Delta-G solvation = -4272.466036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30406 -39.78662 -38.76873 -37.11275 -36.25081 -35.49351 -33.41365 -32.30485 -31.86104 -30.17333 -29.22644 -28.82117 -27.27763 -26.01458 -25.12321 -23.77289 -21.80855 -21.44611 -21.08018 -20.58706 -20.15052 -17.88171 -17.58410 -17.18727 -16.96529 -16.79469 -16.26066 -15.72713 -15.51500 -15.16888 -14.86243 -14.51923 -14.36677 -14.20953 -14.03832 -13.67530 -13.52596 -13.30110 -13.21830 -12.95063 -12.78909 -12.56560 -12.42177 -12.28590 -12.18102 -11.75744 -11.67772 -11.63399 -11.44498 -11.20711 -11.09118 -10.78514 -10.69530 -10.67526 -10.53670 -10.38520 -9.96214 -9.63664 -9.25592 -9.05312 -8.76356 -7.97910 -7.13361 -6.36833 -3.95679 2.17796 2.47687 2.84236 2.95961 3.16590 3.18317 3.21659 3.24108 3.50993 4.02063 4.03310 4.10106 4.16299 4.40283 4.58939 4.62800 4.80607 4.94335 4.98406 5.01227 5.04012 5.06315 5.12275 5.17438 5.24087 5.28234 5.29284 5.37626 5.50332 5.56788 5.60224 5.66799 5.75275 5.83061 5.90587 5.98949 6.01966 6.26021 6.42238 6.49583 6.71289 6.74386 7.00293 7.15315 7.35416 7.44941 7.51819 7.54865 7.91556 8.08418 8.40562 9.09020 9.80458 10.81572 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.001849 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.256574 B =15143.178045 C =15670.978732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.032 4.032 15 C -0.094 4.094 16 C 0.514 3.486 17 O -0.517 6.517 18 N -0.732 5.732 19 C 0.146 3.854 20 H 0.097 0.903 21 C -0.129 4.129 22 C -0.141 4.141 23 C 0.252 3.748 24 C -0.134 4.134 25 O -0.362 6.362 26 C 0.014 3.986 27 C 0.018 3.982 28 O -0.372 6.372 29 C -0.174 4.174 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -28.495 7.355 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.134 4.134 16 C 0.301 3.699 17 O -0.391 6.391 18 N -0.386 5.386 19 C 0.041 3.959 20 H 0.115 0.885 21 C -0.168 4.168 22 C -0.179 4.179 23 C 0.175 3.825 24 C -0.172 4.172 25 O -0.282 6.282 26 C -0.063 4.063 27 C -0.058 4.058 28 O -0.292 6.292 29 C -0.194 4.194 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.096 0.904 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.713 -27.506 7.913 28.631 hybrid contribution 0.374 0.246 -0.241 0.508 sum -0.339 -27.261 7.672 28.322 Atomic orbital electron populations 1.70045 1.05913 1.27489 1.46593 1.25272 0.95842 0.98761 0.96735 0.85720 0.78936 0.80205 0.78607 1.19956 1.20319 1.19235 1.21309 0.91764 0.80879 1.52646 0.89153 1.83976 1.34227 1.11360 1.78861 1.19278 0.90259 0.87968 0.92395 1.21169 0.93839 0.98922 1.11065 1.20675 0.98343 0.92320 0.98021 1.20345 0.93317 0.96982 1.10878 1.18660 0.93216 0.91977 0.99404 1.20597 1.02597 0.97128 0.93089 1.20777 0.76967 0.80552 0.91640 1.90759 1.48542 1.47117 1.52702 1.46201 1.62927 1.22001 1.07501 1.21446 0.93466 0.98344 0.82673 0.88452 1.22762 0.97786 0.97543 0.98677 1.22999 0.95887 0.99616 0.99403 1.23742 0.88123 0.88629 0.82019 1.22661 0.98492 0.93607 1.02488 1.89228 1.86848 1.14847 1.37263 1.24436 0.96798 0.88071 0.96966 1.24250 0.98312 0.83311 0.99947 1.88889 1.63112 1.25724 1.51521 1.19943 0.99062 0.89949 1.10425 0.92151 0.85651 0.87522 0.87976 0.88291 0.88424 0.76649 0.90528 0.90269 0.89343 0.90521 0.88348 0.89366 0.90556 0.87286 0.88183 0.90436 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.10 13.67 55.48 0.76 -25.34 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.30 9.49 30.88 0.29 -11.01 16 8 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 9 O -0.18 -5.37 9.76 0.03 0.00 -5.37 16 10 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 12 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 13 C -0.20 -3.65 9.70 -39.54 -0.38 -4.03 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.09 -1.29 5.83 -29.03 -0.17 -1.46 16 16 C 0.51 7.61 7.82 -10.98 -0.09 7.52 16 17 O -0.52 -10.23 15.70 5.56 0.09 -10.15 16 18 N -0.73 -7.93 5.04 -52.62 -0.27 -8.19 16 19 C 0.15 1.55 3.24 -66.71 -0.22 1.33 16 20 H 0.10 1.23 7.59 -51.93 -0.39 0.84 16 21 C -0.13 -1.29 6.53 -24.95 -0.16 -1.45 16 22 C -0.14 -1.20 6.31 -24.97 -0.16 -1.36 16 23 C 0.25 2.19 1.24 -25.72 -0.03 2.16 16 24 C -0.13 -1.18 6.10 -25.86 -0.16 -1.34 16 25 O -0.36 -3.05 11.02 -59.03 -0.65 -3.70 16 26 C 0.01 0.07 7.96 38.19 0.30 0.37 16 27 C 0.02 0.10 8.08 38.19 0.31 0.41 16 28 O -0.37 -3.28 10.93 -59.03 -0.64 -3.92 16 29 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 32 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.40 3.19 8.31 -40.82 -0.34 2.85 16 37 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.09 0.71 7.54 -51.93 -0.39 0.32 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.11 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -36.32 390.69 -9.00 -45.31 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.73 Total: 6.42 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.41 Total: -17.13 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.49 Total: -33.54 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.21 Total: -23.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.32 -9.00 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435702703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.373 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds