Wall clock time and date at job start Wed Apr 1 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48500 * 109.46888 * 269.99043 * 3 2 1 5 5 H 1.48491 * 109.47300 * 29.99235 * 3 2 1 6 6 H 1.48502 * 109.47074 * 149.99677 * 3 2 1 7 7 C 1.38650 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00007 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99935 * 185.06193 * 9 7 2 11 11 C 1.38899 * 120.06818 * 354.48449 * 10 9 7 12 12 C 1.38075 * 119.92619 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.07335 * 0.02562 * 12 11 10 14 14 C 1.38274 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96527 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46983 * 90.00597 * 15 14 13 17 17 O 1.21282 * 120.00119 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99804 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00092 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.02158 * 34.28986 * 19 18 16 21 21 C 1.54318 * 110.03790 * 272.89237 * 19 18 16 22 22 C 1.55066 * 104.23033 * 217.26003 * 21 19 18 23 23 C 1.54286 * 102.74278 * 37.26047 * 22 21 19 24 24 C 1.53649 * 104.88485 * 322.76229 * 23 22 21 25 25 O 1.43076 * 110.25351 * 81.89559 * 23 22 21 26 26 C 1.44952 * 104.60192 * 98.11356 * 25 23 22 27 27 C 1.54964 * 101.82424 * 35.41189 * 26 25 23 28 28 O 1.42681 * 110.47822 * 203.23737 * 23 22 21 29 29 C 1.38119 * 120.06910 * 0.02562 * 14 13 12 30 30 H 0.97001 * 120.00188 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.03258 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.96003 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.92942 * 180.27661 * 13 12 11 34 34 H 1.09005 * 109.47038 * 210.00112 * 15 14 13 35 35 H 1.08992 * 109.47267 * 329.99998 * 15 14 13 36 36 H 0.96996 * 120.00047 * 359.97438 * 18 16 15 37 37 H 1.09004 * 110.46834 * 335.93020 * 21 19 18 38 38 H 1.08998 * 110.47224 * 98.52856 * 21 19 18 39 39 H 1.09000 * 110.72581 * 278.95713 * 22 21 19 40 40 H 1.09000 * 110.93134 * 155.65633 * 22 21 19 41 41 H 1.09005 * 110.05886 * 263.74852 * 24 23 22 42 42 H 1.08992 * 110.06362 * 142.23968 * 24 23 22 43 43 H 1.09001 * 110.95506 * 277.27507 * 26 25 23 44 44 H 1.08999 * 110.95599 * 153.54620 * 26 25 23 45 45 H 1.09006 * 110.69186 * 206.42646 * 27 26 25 46 46 H 1.08998 * 110.69316 * 83.23431 * 27 26 25 47 47 H 1.08007 * 120.03796 * 179.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.6998 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4573 -3.4394 0.0959 12 6 4.2022 -4.5968 0.2057 13 6 3.5683 -5.8202 0.3270 14 6 2.1873 -5.8884 0.3392 15 6 1.5007 -7.2233 0.4720 16 6 1.2774 -7.5304 1.9304 17 8 1.6405 -6.7430 2.7784 18 7 0.6751 -8.6805 2.2924 19 6 0.4585 -8.9792 3.7101 20 1 0.2540 -8.0596 4.2583 21 6 1.7010 -9.6803 4.2985 22 6 1.1178 -10.7243 5.2857 23 6 -0.1497 -11.2132 4.5545 24 6 -0.7176 -9.9609 3.8689 25 8 0.1908 -12.2085 3.5847 26 6 -0.0832 -13.4700 4.2440 27 6 -1.3312 -13.1199 5.0933 28 8 -1.0868 -11.7520 5.4858 29 6 1.4365 -4.7343 0.2297 30 1 -0.4850 0.8400 -0.0004 31 1 3.9528 -2.4845 0.0016 32 1 5.2811 -4.5467 0.1969 33 1 4.1533 -6.7236 0.4172 34 1 0.5409 -7.1911 -0.0436 35 1 2.1253 -7.9988 0.0289 36 1 0.3851 -9.3103 1.6142 37 1 2.2680 -10.1759 3.5105 38 1 2.3286 -8.9631 4.8276 39 1 0.8595 -10.2552 6.2351 40 1 1.8162 -11.5468 5.4401 41 1 -1.4954 -9.5153 4.4892 42 1 -1.1220 -10.2210 2.8908 43 1 0.7508 -13.7665 4.8802 44 1 -0.3125 -14.2484 3.5164 45 1 -1.3949 -13.7662 5.9688 46 1 -2.2381 -13.1923 4.4932 47 1 0.3578 -4.7882 0.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435702703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:57 Heat of formation + Delta-G solvation = -152.399867 kcal Electronic energy + Delta-G solvation = -29732.224475 eV Core-core repulsion = 25458.643295 eV Total energy + Delta-G solvation = -4273.581180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92903 -41.07708 -40.38680 -38.38960 -37.65477 -36.06161 -34.44575 -34.30994 -33.33670 -30.91829 -30.69492 -29.75539 -28.45737 -27.33771 -26.77225 -24.20605 -23.33492 -22.97705 -21.89263 -21.57209 -21.36661 -19.49599 -18.80377 -18.47350 -17.84240 -17.76401 -17.21953 -16.79906 -16.57299 -16.26760 -16.13999 -16.08752 -15.69416 -15.49731 -15.16747 -15.02884 -14.75363 -14.52876 -14.31025 -14.01328 -13.85782 -13.60157 -13.54530 -13.40893 -13.12075 -12.98052 -12.95775 -12.70325 -12.50944 -12.41908 -12.32883 -12.21101 -12.19885 -12.10737 -11.90105 -11.20412 -11.14052 -10.92615 -10.78585 -10.56594 -10.06345 -9.62587 -8.96894 -8.46748 -6.15201 0.53155 0.76645 1.33550 1.43686 1.51811 1.69477 2.16527 2.20991 2.48349 2.84322 2.90815 3.18252 3.36204 3.42095 3.46072 3.71427 3.82738 4.02850 4.10817 4.12282 4.13137 4.17376 4.25865 4.32844 4.34844 4.42239 4.46894 4.49853 4.59739 4.61533 4.65966 4.67627 4.74904 4.81393 4.88108 4.92534 5.00571 5.07169 5.11251 5.13083 5.15708 5.32040 5.55787 5.66084 5.73742 5.76561 6.03260 6.16087 6.24570 6.60333 6.97754 7.33515 7.79603 8.76885 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.001849 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.256574 B =15143.178045 C =15670.978732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.180 4.180 14 C -0.025 4.025 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.577 6.577 18 N -0.711 5.711 19 C 0.143 3.857 20 H 0.070 0.930 21 C -0.123 4.123 22 C -0.137 4.137 23 C 0.255 3.745 24 C -0.129 4.129 25 O -0.376 6.376 26 C 0.010 3.990 27 C 0.011 3.989 28 O -0.392 6.392 29 C -0.193 4.193 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.417 0.583 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.132 0.868 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -31.929 7.095 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.199 4.199 14 C -0.025 4.025 15 C -0.131 4.131 16 C 0.303 3.697 17 O -0.455 6.455 18 N -0.365 5.365 19 C 0.038 3.962 20 H 0.089 0.911 21 C -0.162 4.162 22 C -0.175 4.175 23 C 0.177 3.823 24 C -0.167 4.167 25 O -0.296 6.296 26 C -0.066 4.066 27 C -0.064 4.064 28 O -0.313 6.313 29 C -0.212 4.212 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.255 0.745 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.103 0.897 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.009 -31.054 7.634 31.995 hybrid contribution -0.114 0.900 -0.115 0.914 sum 0.895 -30.154 7.520 31.091 Atomic orbital electron populations 1.70195 1.08015 1.28729 1.49125 1.26629 0.96927 1.02786 0.95943 0.84566 0.77687 0.74430 0.79364 1.18467 1.19545 1.17869 1.21820 0.92487 0.81522 1.53147 0.88272 1.83935 1.35908 1.12545 1.81771 1.19888 0.91704 0.87937 0.94403 1.21291 0.93116 1.00198 1.11982 1.21135 1.00220 0.91478 0.96369 1.20973 0.93520 0.98161 1.07215 1.19194 0.93764 0.93064 0.96516 1.20712 1.04311 0.95229 0.92817 1.20941 0.76513 0.80731 0.91553 1.90754 1.51462 1.49135 1.54195 1.46009 1.61158 1.21052 1.08236 1.21446 0.94847 0.97795 0.82126 0.91148 1.22662 0.97160 0.97471 0.98930 1.22965 0.96237 0.99415 0.98865 1.23598 0.87955 0.88694 0.82028 1.22592 0.97528 0.93401 1.03176 1.89200 1.86923 1.15942 1.37572 1.24683 0.96949 0.87334 0.97602 1.24507 0.98768 0.82033 1.01105 1.88872 1.63126 1.27561 1.51747 1.20225 0.99288 0.90476 1.11254 0.91878 0.86469 0.83703 0.83530 0.86022 0.83838 0.74521 0.90217 0.91849 0.89623 0.89413 0.88599 0.88273 0.89669 0.85027 0.86208 0.89746 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.79 13.67 21.61 0.30 -58.50 16 2 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 3 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.41 -25.39 9.49 67.92 0.64 -24.74 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -14.99 9.76 -22.81 -0.22 -15.21 16 10 C 0.11 5.95 6.65 22.58 0.15 6.10 16 11 C -0.25 -11.63 9.17 22.39 0.21 -11.43 16 12 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.18 -6.08 9.70 22.30 0.22 -5.86 16 14 C -0.02 -0.89 4.37 -19.88 -0.09 -0.97 16 15 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 16 C 0.52 14.31 7.82 87.66 0.69 15.00 16 17 O -0.58 -22.78 15.70 -3.04 -0.05 -22.83 16 18 N -0.71 -13.90 5.04 -438.79 -2.21 -16.12 16 19 C 0.14 2.93 3.24 45.78 0.15 3.08 16 20 H 0.07 1.85 7.59 -2.39 -0.02 1.84 16 21 C -0.12 -2.34 6.53 31.75 0.21 -2.13 16 22 C -0.14 -2.15 6.31 31.74 0.20 -1.95 16 23 C 0.25 3.97 1.24 31.25 0.04 4.00 16 24 C -0.13 -2.10 6.10 31.16 0.19 -1.91 16 25 O -0.38 -5.32 11.02 -126.23 -1.39 -6.71 16 26 C 0.01 0.07 7.96 72.65 0.58 0.65 16 27 C 0.01 0.09 8.08 72.65 0.59 0.68 16 28 O -0.39 -6.24 10.93 -126.23 -1.38 -7.62 16 29 C -0.19 -8.93 9.65 22.39 0.22 -8.71 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 32 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.12 2.43 8.08 -2.38 -0.02 2.41 16 35 H 0.14 2.18 8.08 -2.39 -0.02 2.17 16 36 H 0.42 5.26 8.31 -92.71 -0.77 4.49 16 37 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.61 8.07 -2.38 -0.02 1.59 16 42 H 0.10 1.38 7.54 -2.39 -0.02 1.36 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -86.59 390.69 2.14 -84.45 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.23 Total: 29.55 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.84 Total: -33.83 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.92 Total: -74.61 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -3.04 Total: -52.37 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -86.59 2.14 -84.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435702703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.949 kcal (2) G-P(sol) polarization free energy of solvation -86.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds