Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00120 * 2 1 4 4 C 1.53007 * 109.47268 * 270.00480 * 3 2 1 5 5 H 1.08991 * 109.46948 * 304.99825 * 4 3 2 6 6 O 1.42896 * 109.46975 * 65.00076 * 4 3 2 7 7 C 1.53000 * 109.47109 * 184.99756 * 4 3 2 8 8 N 1.46496 * 109.47265 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00025 * 179.72257 * 8 7 4 10 10 H 1.07995 * 120.00267 * 0.28108 * 9 8 7 11 11 C 1.38814 * 119.99782 * 180.27662 * 9 8 7 12 12 N 1.31617 * 120.00250 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99840 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47306 * 59.99705 * 13 11 9 15 15 H 1.48501 * 109.46894 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46872 * 299.99608 * 13 11 9 17 17 C 1.34776 * 119.99945 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00247 * 175.75016 * 17 2 1 19 19 C 1.47438 * 120.00048 * 355.74458 * 17 2 1 20 20 C 1.38709 * 120.31817 * 48.46492 * 19 17 2 21 21 C 1.39102 * 120.70037 * 179.97438 * 20 19 17 22 22 F 1.35095 * 119.50040 * 179.97438 * 21 20 19 23 23 C 1.36544 * 120.99984 * 359.97438 * 21 20 19 24 24 C 1.40405 * 120.07060 * 359.97438 * 23 21 20 25 25 C 1.40818 * 121.23696 * 180.02562 * 24 23 21 26 26 C 1.36636 * 118.15133 * 179.28576 * 25 24 23 27 27 C 1.39237 * 119.90878 * 0.68579 * 26 25 24 28 28 N 1.31214 * 121.69411 * 359.52561 * 27 26 25 29 29 C 1.33361 * 121.36504 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47608 * 95.09379 * 1 2 3 31 31 H 1.09007 * 109.46915 * 215.09294 * 1 2 3 32 32 H 1.09004 * 109.46778 * 335.08664 * 1 2 3 33 33 H 1.08996 * 109.47382 * 150.00448 * 3 2 1 34 34 H 1.09002 * 109.47286 * 30.00354 * 3 2 1 35 35 H 0.96703 * 114.00585 * 59.99799 * 6 4 3 36 36 H 1.09002 * 109.47142 * 59.99852 * 7 4 3 37 37 H 1.09004 * 109.47034 * 300.00494 * 7 4 3 38 38 H 0.97005 * 120.00051 * 0.02562 * 8 7 4 39 39 H 0.97003 * 119.99838 * 180.02562 * 12 11 9 40 40 H 1.08000 * 119.65185 * 359.94829 * 20 19 17 41 41 H 1.08005 * 119.96030 * 180.02562 * 23 21 20 42 42 H 1.08003 * 120.92260 * 359.95452 * 25 24 23 43 43 H 1.08003 * 120.04255 * 180.19565 * 26 25 24 44 44 H 1.08000 * 119.15017 * 179.50872 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2059 1.9937 -2.0813 7 6 3.3237 2.9682 -1.4443 8 7 3.5683 3.3908 -2.8255 9 6 4.3241 4.5046 -3.0770 10 1 4.7437 5.0688 -2.2574 11 6 4.5511 4.9083 -4.3856 12 7 4.0394 4.2209 -5.3846 13 14 5.5829 6.4273 -4.7288 14 1 6.9457 6.2365 -4.1706 15 1 5.6746 6.6424 -6.1953 16 1 4.9488 7.6102 -4.0933 17 6 2.1388 -1.1672 -0.0005 18 8 3.3524 -1.1687 -0.0786 19 6 1.4047 -2.4423 0.0937 20 6 0.3118 -2.6832 -0.7258 21 6 -0.3863 -3.8836 -0.6440 22 9 -1.4475 -4.0925 -1.4535 23 6 -0.0151 -4.8540 0.2420 24 6 1.0862 -4.6498 1.0885 25 6 1.4907 -5.6339 2.0109 26 6 2.5802 -5.3749 2.7937 27 6 3.2471 -4.1584 2.6748 28 7 2.8633 -3.2428 1.8169 29 6 1.8133 -3.4369 1.0178 30 1 -0.3634 -0.0912 -1.0236 31 1 -0.3633 -0.8409 0.5909 32 1 -0.3633 0.9321 0.4329 33 1 3.1499 1.1384 0.5137 34 1 1.6085 2.0284 0.5139 35 1 0.6953 2.6951 -1.6541 36 1 4.2745 2.7522 -0.9570 37 1 2.8120 3.7654 -0.9051 38 1 3.1912 2.8842 -3.5618 39 1 4.1984 4.5029 -6.2990 40 1 -0.0008 -1.9307 -1.4346 41 1 -0.5689 -5.7800 0.2910 42 1 0.9611 -6.5719 2.0897 43 1 2.9189 -6.1096 3.5092 44 1 4.1020 -3.9633 3.3053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486303071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = -45.709601 kcal Electronic energy + Delta-G solvation = -29797.948562 eV Core-core repulsion = 25437.826266 eV Total energy + Delta-G solvation = -4360.122297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.36509 -41.43268 -39.79524 -37.50948 -37.03333 -35.19569 -33.99645 -33.91225 -31.47880 -31.00233 -30.48097 -29.25219 -26.93501 -25.88328 -24.80390 -24.00452 -23.51943 -22.39560 -21.15275 -19.90165 -19.09533 -17.91066 -17.77432 -17.11111 -16.89077 -16.45818 -16.21747 -15.97310 -15.87664 -15.43882 -15.06686 -14.69335 -14.62194 -14.57801 -14.38668 -13.90215 -13.61329 -13.54905 -13.50107 -12.93559 -12.86693 -12.79196 -12.63499 -12.40782 -12.06070 -11.91944 -11.76151 -11.46412 -11.01612 -10.89417 -10.76254 -10.62596 -10.19655 -10.14618 -9.84346 -9.69765 -9.57362 -9.22512 -8.83730 -8.72153 -8.48735 -6.86157 -5.69182 -2.98473 -0.34909 0.23620 1.30718 2.16025 2.70056 2.85831 3.48177 3.51985 3.53608 3.55277 3.68390 3.79503 3.95955 4.19725 4.36744 4.40491 4.41419 4.61320 4.71900 4.77390 4.84969 4.95937 5.05857 5.10575 5.17064 5.23796 5.34127 5.40077 5.43014 5.51526 5.60207 5.61712 5.68730 5.73161 5.82883 5.97428 6.05526 6.24996 6.29259 6.46598 6.60552 6.80754 7.24363 7.53399 7.73453 8.07271 8.11509 8.49100 9.60259 10.18831 10.54729 11.53230 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002266 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.459317 B =12351.662816 C =13191.527087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.090 3.910 4 C 0.086 3.914 5 H 0.101 0.899 6 O -0.551 6.551 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.563 3.437 18 O -0.500 6.500 19 C -0.063 4.063 20 C -0.103 4.103 21 C 0.104 3.896 22 F -0.131 7.131 23 C -0.118 4.118 24 C -0.085 4.085 25 C -0.058 4.058 26 C -0.166 4.166 27 C 0.136 3.864 28 N -0.450 5.450 29 C 0.150 3.850 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.366 0.634 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 -22.610 19.744 32.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C -0.033 4.033 4 C 0.025 3.975 5 H 0.119 0.881 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.349 3.651 18 O -0.374 6.374 19 C -0.067 4.067 20 C -0.124 4.124 21 C 0.085 3.915 22 F -0.109 7.109 23 C -0.138 4.138 24 C -0.087 4.087 25 C -0.084 4.084 26 C -0.186 4.186 27 C -0.037 4.037 28 N -0.156 5.156 29 C 0.027 3.973 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.213 0.787 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.174 0.826 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.414 -22.082 19.133 31.368 hybrid contribution -0.421 0.232 -0.209 0.525 sum -11.835 -21.849 18.924 31.234 Atomic orbital electron populations 1.21998 0.79428 1.02984 1.02219 1.47593 1.07031 1.05577 1.73354 1.22291 0.98402 0.83968 0.98643 1.22555 0.85166 0.98193 0.91560 0.88101 1.86609 1.32332 1.59032 1.57481 1.21213 0.96392 0.92890 0.89712 1.42234 1.61949 1.32003 1.00811 1.19179 1.23887 1.02445 0.91800 0.91326 1.24762 1.01234 0.99393 0.95593 1.69676 1.49158 1.40806 0.98246 0.86258 0.80165 0.82825 0.76858 1.21269 1.21686 1.21304 1.17750 0.87112 0.82798 0.77414 1.90862 1.12838 1.86473 1.47263 1.19666 0.95229 0.95153 0.96637 1.21590 0.93959 0.97094 0.99745 1.17117 0.87143 0.94902 0.92384 1.91561 1.53310 1.95062 1.70981 1.21038 0.97397 0.99679 0.95709 1.18469 0.96706 0.95345 0.98222 1.21447 0.95821 0.98078 0.93040 1.22000 0.96682 0.99040 1.00885 1.23156 0.97960 0.88869 0.93694 1.68109 1.11629 1.32056 1.03853 1.18540 0.92232 0.91506 0.95054 0.91590 0.91699 0.90623 0.88717 0.89959 0.78743 0.95479 0.96306 0.77665 0.93480 0.82647 0.83517 0.83841 0.83994 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 8.69 59.85 0.52 1.22 16 2 N -0.60 -7.74 2.84 -182.84 -0.52 -8.26 16 3 C 0.09 1.22 5.07 -4.04 -0.02 1.20 16 4 C 0.09 1.48 3.30 -26.73 -0.09 1.39 16 5 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 6 O -0.55 -9.22 12.64 -35.23 -0.45 -9.66 16 7 C 0.13 2.62 5.92 -4.04 -0.02 2.59 16 8 N -0.73 -19.37 5.49 -59.91 -0.33 -19.70 16 9 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.36 13.06 55.49 0.72 -28.63 16 13 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 C 0.56 8.54 6.97 -12.51 -0.09 8.46 16 18 O -0.50 -9.59 16.13 5.27 0.09 -9.51 16 19 C -0.06 -0.79 4.94 -104.62 -0.52 -1.31 16 20 C -0.10 -1.05 7.72 -39.09 -0.30 -1.35 16 21 C 0.10 0.94 7.22 -39.87 -0.29 0.65 16 22 F -0.13 -1.21 17.24 2.25 0.04 -1.17 16 23 C -0.12 -0.90 9.71 -39.38 -0.38 -1.29 16 24 C -0.09 -0.76 5.74 -106.83 -0.61 -1.37 16 25 C -0.06 -0.36 9.89 -39.19 -0.39 -0.75 16 26 C -0.17 -0.98 10.03 -39.79 -0.40 -1.38 16 27 C 0.14 1.17 11.15 -17.44 -0.19 0.97 16 28 N -0.45 -5.75 9.37 -10.76 -0.10 -5.85 16 29 C 0.15 1.81 6.59 -84.57 -0.56 1.25 16 30 H 0.07 0.60 7.04 -51.93 -0.37 0.23 16 31 H 0.06 0.52 6.28 -51.92 -0.33 0.19 16 32 H 0.08 0.55 7.84 -51.93 -0.41 0.15 16 33 H 0.09 1.41 7.48 -51.93 -0.39 1.02 16 34 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 35 H 0.37 4.85 9.05 45.56 0.41 5.26 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.39 11.20 7.54 -40.82 -0.31 10.89 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.16 1.46 6.23 -52.49 -0.33 1.13 16 41 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 43 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 44 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -38.07 378.19 -8.08 -46.15 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.62 Total: 10.29 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.59 Total: 2.59 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.22 Total: -62.43 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.36 Total: -19.17 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.07 -8.08 -46.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486303071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.443 kcal (2) G-P(sol) polarization free energy of solvation -38.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds