Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00120 * 2 1 4 4 C 1.53007 * 109.47268 * 270.00480 * 3 2 1 5 5 H 1.08991 * 109.46948 * 304.99825 * 4 3 2 6 6 O 1.42896 * 109.46975 * 65.00076 * 4 3 2 7 7 C 1.53000 * 109.47109 * 184.99756 * 4 3 2 8 8 N 1.46496 * 109.47265 * 179.97438 * 7 4 3 9 9 C 1.36932 * 120.00025 * 179.72257 * 8 7 4 10 10 H 1.07995 * 120.00267 * 0.28108 * 9 8 7 11 11 C 1.38814 * 119.99782 * 180.27662 * 9 8 7 12 12 N 1.31617 * 120.00250 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99840 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47306 * 59.99705 * 13 11 9 15 15 H 1.48501 * 109.46894 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46872 * 299.99608 * 13 11 9 17 17 C 1.34776 * 119.99945 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00247 * 175.75016 * 17 2 1 19 19 C 1.47438 * 120.00048 * 355.74458 * 17 2 1 20 20 C 1.38709 * 120.31817 * 48.46492 * 19 17 2 21 21 C 1.39102 * 120.70037 * 179.97438 * 20 19 17 22 22 F 1.35095 * 119.50040 * 179.97438 * 21 20 19 23 23 C 1.36544 * 120.99984 * 359.97438 * 21 20 19 24 24 C 1.40405 * 120.07060 * 359.97438 * 23 21 20 25 25 C 1.40818 * 121.23696 * 180.02562 * 24 23 21 26 26 C 1.36636 * 118.15133 * 179.28576 * 25 24 23 27 27 C 1.39237 * 119.90878 * 0.68579 * 26 25 24 28 28 N 1.31214 * 121.69411 * 359.52561 * 27 26 25 29 29 C 1.33361 * 121.36504 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47608 * 95.09379 * 1 2 3 31 31 H 1.09007 * 109.46915 * 215.09294 * 1 2 3 32 32 H 1.09004 * 109.46778 * 335.08664 * 1 2 3 33 33 H 1.08996 * 109.47382 * 150.00448 * 3 2 1 34 34 H 1.09002 * 109.47286 * 30.00354 * 3 2 1 35 35 H 0.96703 * 114.00585 * 59.99799 * 6 4 3 36 36 H 1.09002 * 109.47142 * 59.99852 * 7 4 3 37 37 H 1.09004 * 109.47034 * 300.00494 * 7 4 3 38 38 H 0.97005 * 120.00051 * 0.02562 * 8 7 4 39 39 H 0.97003 * 119.99838 * 180.02562 * 12 11 9 40 40 H 1.08000 * 119.65185 * 359.94829 * 20 19 17 41 41 H 1.08005 * 119.96030 * 180.02562 * 23 21 20 42 42 H 1.08003 * 120.92260 * 359.95452 * 25 24 23 43 43 H 1.08003 * 120.04255 * 180.19565 * 26 25 24 44 44 H 1.08000 * 119.15017 * 179.50872 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 2.9641 0.9132 -1.9816 6 8 1.2059 1.9937 -2.0813 7 6 3.3237 2.9682 -1.4443 8 7 3.5683 3.3908 -2.8255 9 6 4.3241 4.5046 -3.0770 10 1 4.7437 5.0688 -2.2574 11 6 4.5511 4.9083 -4.3856 12 7 4.0394 4.2209 -5.3846 13 14 5.5829 6.4273 -4.7288 14 1 6.9457 6.2365 -4.1706 15 1 5.6746 6.6424 -6.1953 16 1 4.9488 7.6102 -4.0933 17 6 2.1388 -1.1672 -0.0005 18 8 3.3524 -1.1687 -0.0786 19 6 1.4047 -2.4423 0.0937 20 6 0.3118 -2.6832 -0.7258 21 6 -0.3863 -3.8836 -0.6440 22 9 -1.4475 -4.0925 -1.4535 23 6 -0.0151 -4.8540 0.2420 24 6 1.0862 -4.6498 1.0885 25 6 1.4907 -5.6339 2.0109 26 6 2.5802 -5.3749 2.7937 27 6 3.2471 -4.1584 2.6748 28 7 2.8633 -3.2428 1.8169 29 6 1.8133 -3.4369 1.0178 30 1 -0.3634 -0.0912 -1.0236 31 1 -0.3633 -0.8409 0.5909 32 1 -0.3633 0.9321 0.4329 33 1 3.1499 1.1384 0.5137 34 1 1.6085 2.0284 0.5139 35 1 0.6953 2.6951 -1.6541 36 1 4.2745 2.7522 -0.9570 37 1 2.8120 3.7654 -0.9051 38 1 3.1912 2.8842 -3.5618 39 1 4.1984 4.5029 -6.2990 40 1 -0.0008 -1.9307 -1.4346 41 1 -0.5689 -5.7800 0.2910 42 1 0.9611 -6.5719 2.0897 43 1 2.9189 -6.1096 3.5092 44 1 4.1020 -3.9633 3.3053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486303071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = -75.001489 kcal Electronic energy + Delta-G solvation = -29799.218754 eV Core-core repulsion = 25437.826266 eV Total energy + Delta-G solvation = -4361.392488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.03949 -42.16726 -40.79942 -38.85059 -37.83182 -36.44778 -35.81831 -34.62475 -33.25401 -31.95058 -31.26145 -30.56320 -27.98744 -27.29166 -25.65038 -25.00092 -24.57034 -23.67417 -22.69776 -20.79724 -19.82318 -19.25944 -18.66687 -18.51486 -17.86757 -17.61093 -17.20619 -16.71131 -16.64505 -16.56797 -16.43681 -16.06167 -15.85121 -15.38402 -15.31585 -15.13640 -14.96648 -14.63661 -14.42075 -14.15642 -14.02703 -13.74816 -13.67978 -13.45671 -13.27190 -13.01568 -12.75837 -12.69587 -12.61931 -12.38194 -12.22820 -12.06393 -11.83603 -11.68092 -11.32184 -11.06806 -10.98738 -10.41559 -9.87303 -9.66297 -9.38080 -9.04000 -7.95958 -5.26618 -1.00897 -0.41593 0.67208 1.43062 1.44962 1.49617 1.55674 1.73329 1.89136 2.54466 2.87968 2.99051 3.12025 3.27349 3.34681 3.46880 3.57881 3.69494 3.73052 3.77819 3.95876 3.97657 4.12544 4.18169 4.25148 4.31421 4.43622 4.49138 4.53083 4.56168 4.61958 4.69268 4.72842 4.79333 4.88452 4.90962 4.99045 5.14904 5.18893 5.38351 5.43095 5.46046 5.67540 6.22200 6.24291 6.88716 6.90841 7.03191 7.30478 8.06135 8.29775 9.27478 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002266 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.459317 B =12351.662816 C =13191.527087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.100 3.900 4 C 0.105 3.895 5 H 0.060 0.940 6 O -0.560 6.560 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.250 4.250 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.980 3.020 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.272 1.272 17 C 0.557 3.443 18 O -0.558 6.558 19 C -0.097 4.097 20 C -0.093 4.093 21 C 0.087 3.913 22 F -0.133 7.133 23 C -0.089 4.089 24 C -0.099 4.099 25 C -0.046 4.046 26 C -0.161 4.161 27 C 0.130 3.870 28 N -0.510 5.510 29 C 0.128 3.872 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.385 0.615 36 H 0.021 0.979 37 H 0.044 0.956 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.155 0.845 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.367 -24.155 22.051 35.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C -0.024 4.024 4 C 0.044 3.956 5 H 0.079 0.921 6 O -0.366 6.366 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.382 4.382 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.198 1.198 17 C 0.345 3.655 18 O -0.436 6.436 19 C -0.101 4.101 20 C -0.114 4.114 21 C 0.067 3.933 22 F -0.111 7.111 23 C -0.108 4.108 24 C -0.101 4.101 25 C -0.071 4.071 26 C -0.180 4.180 27 C -0.041 4.041 28 N -0.218 5.218 29 C 0.005 3.995 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.234 0.766 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.173 0.827 41 H 0.203 0.797 42 H 0.205 0.795 43 H 0.200 0.800 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.093 -23.614 21.505 34.518 hybrid contribution 0.064 0.586 -0.802 0.996 sum -13.029 -23.028 20.703 33.595 Atomic orbital electron populations 1.22224 0.76935 1.04915 1.02810 1.47697 1.08538 1.04687 1.72198 1.22116 0.98894 0.85426 0.95927 1.22152 0.84682 0.95361 0.93357 0.92139 1.86577 1.31931 1.59941 1.58186 1.21413 0.97030 0.94958 0.86875 1.42456 1.61796 1.31477 1.02723 1.19649 1.23433 1.02834 0.92238 0.90373 1.25690 1.03090 1.02898 0.95465 1.69860 1.51114 1.42836 0.98376 0.85123 0.78580 0.79209 0.76294 1.20466 1.22099 1.19807 1.18307 0.86739 0.84241 0.76169 1.90805 1.15283 1.87462 1.50074 1.19496 0.96783 0.94625 0.99180 1.21565 0.93206 0.97801 0.98780 1.17101 0.87593 0.95068 0.93509 1.91556 1.53337 1.95034 1.71208 1.21427 0.96028 1.00124 0.93269 1.18733 0.96935 0.95013 0.99443 1.21981 0.95488 0.98557 0.91106 1.22385 0.96026 0.98418 1.01197 1.23689 0.98346 0.89485 0.92629 1.68058 1.13227 1.34553 1.05971 1.18761 0.92839 0.92640 0.95246 0.91521 0.90482 0.88103 0.90347 0.85994 0.76649 0.96060 0.93855 0.79439 0.93985 0.82698 0.79707 0.79504 0.79979 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 8.69 127.77 1.11 2.38 16 2 N -0.60 -15.87 2.84 -850.64 -2.41 -18.28 16 3 C 0.10 2.75 5.07 86.38 0.44 3.19 16 4 C 0.11 3.76 3.30 30.60 0.10 3.86 16 5 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 6 O -0.56 -18.80 12.64 -148.98 -1.88 -20.68 16 7 C 0.12 5.22 5.92 86.38 0.51 5.73 16 8 N -0.74 -40.60 5.49 -343.46 -1.89 -42.48 16 9 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 10 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 12 N -0.97 -62.85 13.06 21.65 0.28 -62.57 16 13 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.56 18.16 6.97 86.67 0.60 18.76 16 18 O -0.56 -23.44 16.13 -4.05 -0.07 -23.50 16 19 C -0.10 -2.56 4.94 -19.86 -0.10 -2.66 16 20 C -0.09 -1.93 7.72 22.59 0.17 -1.76 16 21 C 0.09 1.46 7.22 22.08 0.16 1.61 16 22 F -0.13 -2.27 17.24 44.97 0.78 -1.50 16 23 C -0.09 -1.11 9.71 22.40 0.22 -0.90 16 24 C -0.10 -1.57 5.74 -21.29 -0.12 -1.69 16 25 C -0.05 -0.39 9.89 22.53 0.22 -0.17 16 26 C -0.16 -1.39 10.03 22.13 0.22 -1.17 16 27 C 0.13 2.15 11.15 85.03 0.95 3.09 16 28 N -0.51 -13.56 9.37 -187.95 -1.76 -15.32 16 29 C 0.13 3.15 6.59 40.61 0.27 3.42 16 30 H 0.07 1.17 7.04 -2.39 -0.02 1.15 16 31 H 0.08 1.18 6.28 -2.38 -0.01 1.16 16 32 H 0.10 1.24 7.84 -2.38 -0.02 1.22 16 33 H 0.08 2.45 7.48 -2.39 -0.02 2.43 16 34 H 0.12 2.37 7.86 -2.39 -0.02 2.35 16 35 H 0.38 9.65 9.05 -74.06 -0.67 8.98 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.37 22.39 7.54 -92.70 -0.70 21.69 16 39 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.16 3.04 6.23 -2.91 -0.02 3.02 16 41 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 44 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -88.63 378.19 0.84 -87.79 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.30 Total: 31.11 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.06 Total: 15.53 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -5.78 Total: -138.65 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.95 Total: -44.19 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -88.63 0.84 -87.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486303071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.791 kcal (2) G-P(sol) polarization free energy of solvation -88.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds