Wall clock time and date at job start Wed Apr 1 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40210 * 126.59306 * 2 1 4 4 N 1.28767 * 108.36771 * 179.68858 * 3 2 1 5 5 C 1.34403 * 109.51941 * 0.45065 * 4 3 2 6 6 C 1.47523 * 125.76558 * 179.81363 * 5 4 3 7 7 O 1.21603 * 119.99700 * 179.68978 * 6 5 4 8 8 N 1.34777 * 120.00283 * 359.41537 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27861 * 8 6 5 10 10 H 1.09004 * 112.84690 * 334.66407 * 9 8 6 11 11 C 1.53775 * 113.61442 * 105.85931 * 9 8 6 12 12 C 1.54055 * 86.98513 * 89.16201 * 11 9 8 13 13 H 1.08997 * 113.68473 * 270.87344 * 12 11 9 14 14 C 1.52997 * 113.61805 * 139.98030 * 12 11 9 15 15 N 1.46498 * 109.47316 * 87.50799 * 14 12 11 16 16 C 1.36944 * 119.99801 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99875 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47318 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47070 * 120.00027 * 20 18 16 23 23 H 1.48496 * 109.47322 * 239.99906 * 20 18 16 24 24 C 1.53771 * 87.07743 * 25.42920 * 12 11 9 25 25 C 1.34812 * 126.59754 * 179.97438 * 2 1 3 26 26 C 1.50704 * 126.58025 * 0.03652 * 25 2 1 27 27 F 1.39899 * 109.46863 * 29.99985 * 26 25 2 28 28 F 1.39905 * 109.47193 * 149.99807 * 26 25 2 29 29 F 1.39898 * 109.47046 * 269.99921 * 26 25 2 30 30 H 1.08993 * 109.46853 * 270.04003 * 1 2 3 31 31 H 1.08998 * 109.47098 * 30.04412 * 1 2 3 32 32 H 1.08999 * 109.46977 * 150.03808 * 1 2 3 33 33 H 0.96990 * 119.99728 * 0.27139 * 8 6 5 34 34 H 1.09005 * 113.61646 * 203.66312 * 11 9 8 35 35 H 1.09001 * 113.62209 * 334.56791 * 11 9 8 36 36 H 1.09008 * 109.46686 * 207.50581 * 14 12 11 37 37 H 1.09002 * 109.47411 * 327.49911 * 14 12 11 38 38 H 0.96995 * 120.00427 * 359.97438 * 15 14 12 39 39 H 0.97004 * 119.99741 * 180.02562 * 19 18 16 40 40 H 1.09003 * 113.61690 * 220.02583 * 24 12 11 41 41 H 1.08999 * 113.61550 * 89.12060 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3008 1.1257 0.0000 4 7 3.5239 0.7230 0.0066 5 6 3.5543 -0.6207 0.0012 6 6 4.7705 -1.4556 0.0020 7 8 4.6756 -2.6679 0.0024 8 7 5.9867 -0.8748 -0.0031 9 6 7.1944 -1.7041 -0.0084 10 1 7.0312 -2.6922 0.4220 11 6 7.9143 -1.7352 -1.3669 12 6 8.7001 -0.5001 -0.8870 13 1 8.2144 0.4468 -1.1228 14 6 10.1786 -0.5234 -1.2800 15 7 10.3395 0.0668 -2.6111 16 6 11.5843 0.1550 -3.1751 17 1 12.4474 -0.2102 -2.6384 18 6 11.7366 0.7138 -4.4366 19 7 10.6848 1.1594 -5.0904 20 14 13.4347 0.8347 -5.2056 21 1 14.4418 0.2677 -4.2733 22 1 13.4563 0.0727 -6.4801 23 1 13.7557 2.2593 -5.4753 24 6 8.4362 -0.9873 0.5474 25 6 2.2687 -1.0823 0.0005 26 6 1.8326 -2.5249 0.0004 27 9 0.6046 -2.6407 -0.6598 28 9 2.7913 -3.3019 -0.6587 29 9 1.6970 -2.9712 1.3193 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 6.0623 0.0921 -0.0034 34 1 8.5358 -2.6189 -1.5116 35 1 7.2579 -1.5349 -2.2137 36 1 10.7562 0.0509 -0.5556 37 1 10.5347 -1.5536 -1.2937 38 1 9.5644 0.3952 -3.0930 39 1 10.7913 1.5495 -5.9721 40 1 8.2007 -0.1836 1.2452 41 1 9.2000 -1.6669 0.9252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506898744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:17 Heat of formation + Delta-G solvation = -39.917907 kcal Electronic energy + Delta-G solvation = -30526.825570 eV Core-core repulsion = 25645.017641 eV Total energy + Delta-G solvation = -4881.807929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.71594 -48.33239 -48.00998 -42.98521 -40.13817 -38.28686 -35.52755 -34.52726 -33.18588 -32.38761 -30.81943 -28.79858 -27.11633 -26.66043 -25.48068 -24.41200 -23.23956 -22.49825 -21.46173 -21.14546 -19.23976 -19.11674 -18.95923 -18.75353 -18.07561 -17.01412 -16.97110 -16.25328 -16.00215 -15.32170 -15.15553 -14.96057 -14.83981 -14.65762 -14.54936 -14.39739 -14.16849 -14.10619 -13.92679 -13.89844 -13.75061 -13.36869 -13.28372 -12.75801 -12.43611 -12.34788 -12.11113 -11.99051 -11.63157 -11.19641 -11.01174 -10.81737 -10.50301 -10.32128 -10.25221 -10.08233 -10.04468 -9.79547 -9.58541 -9.06059 -8.81091 -6.85607 -5.71853 -2.99843 0.04343 1.01029 1.09194 1.90712 2.73687 2.83776 2.90547 3.31233 3.46309 3.51725 3.54121 3.65316 3.73215 3.85027 4.26710 4.31230 4.60864 4.61665 4.67349 4.69535 4.84194 4.99993 5.13816 5.16863 5.35703 5.62373 5.71532 5.88937 5.96840 6.02549 6.14812 6.25071 6.32123 6.45643 6.61539 6.83031 6.97835 7.06489 7.35701 7.74799 7.91678 8.47415 9.58378 10.18136 10.52388 11.51211 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002149 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.218865 B =13029.065497 C =13448.983482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.325 5.325 3 N -0.023 5.023 4 N -0.197 5.197 5 C -0.027 4.027 6 C 0.594 3.406 7 O -0.515 6.515 8 N -0.685 5.685 9 C 0.115 3.885 10 H 0.104 0.896 11 C -0.138 4.138 12 C -0.115 4.115 13 H 0.089 0.911 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.137 4.137 25 C 0.003 3.997 26 C 0.547 3.453 27 F -0.174 7.174 28 F -0.121 7.121 29 F -0.160 7.160 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.071 0.929 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.819 -5.627 15.146 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.111 5.111 3 N -0.003 5.003 4 N -0.068 5.068 5 C -0.169 4.169 6 C 0.376 3.624 7 O -0.390 6.390 8 N -0.335 5.335 9 C 0.011 3.989 10 H 0.122 0.878 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.107 0.893 14 C 0.035 3.965 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.175 4.175 25 C -0.136 4.136 26 C 0.490 3.510 27 F -0.155 7.155 28 F -0.102 7.102 29 F -0.141 7.141 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.689 -5.013 15.134 30.234 hybrid contribution 0.297 -0.282 -0.755 0.859 sum -25.391 -5.295 14.379 29.657 Atomic orbital electron populations 1.22737 0.71222 1.07585 1.06009 1.50346 1.09623 1.03962 1.47178 1.82146 0.93469 1.04874 1.19794 1.74798 1.12568 1.09019 1.10398 1.21455 0.93297 0.90681 1.11469 1.16655 0.81763 0.86488 0.77458 1.90931 1.85963 1.12307 1.49759 1.45436 1.04324 1.11010 1.72769 1.22048 0.82911 0.95137 0.98843 0.87849 1.23467 0.98562 0.99338 0.96257 1.22834 0.97900 0.98150 0.94468 0.89264 1.20636 0.91483 0.96053 0.88334 1.42365 1.07221 1.72837 1.15193 1.19292 0.86077 1.32804 0.98641 0.91187 1.24744 0.97170 1.01821 0.97472 1.69675 1.27784 1.46757 1.14046 0.86123 0.83809 0.77223 0.79096 1.20583 1.21927 1.21924 1.23309 0.96355 1.00443 0.97423 1.21631 0.92657 0.90190 1.09145 1.16896 0.75244 0.83681 0.75217 1.93156 1.44801 1.96301 1.81284 1.93485 1.61518 1.75014 1.80140 1.93285 1.95518 1.90104 1.35208 0.88094 0.86723 0.86995 0.75341 0.88858 0.91167 0.96379 0.96180 0.78312 0.93639 0.91053 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 11.25 59.85 0.67 0.87 16 2 N -0.32 -2.66 4.03 -63.60 -0.26 -2.92 16 3 N -0.02 -0.24 13.78 60.35 0.83 0.59 16 4 N -0.20 -2.36 12.04 32.85 0.40 -1.96 16 5 C -0.03 -0.33 6.96 -83.55 -0.58 -0.91 16 6 C 0.59 7.83 7.76 -12.48 -0.10 7.74 16 7 O -0.52 -7.77 12.67 5.27 0.07 -7.70 16 8 N -0.69 -8.38 5.26 -54.06 -0.28 -8.66 16 9 C 0.12 1.44 4.30 -67.12 -0.29 1.15 16 10 H 0.10 1.30 7.50 -51.93 -0.39 0.91 16 11 C -0.14 -2.04 7.45 -25.78 -0.19 -2.23 16 12 C -0.11 -1.79 3.65 -89.67 -0.33 -2.12 16 13 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 14 C 0.16 3.24 6.10 -4.04 -0.02 3.22 16 15 N -0.73 -18.81 5.60 -59.90 -0.34 -19.14 16 16 C -0.24 -6.75 9.99 -15.05 -0.15 -6.90 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 20 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 25 C 0.00 0.03 6.46 -81.87 -0.53 -0.49 16 26 C 0.55 5.21 3.24 36.01 0.12 5.33 16 27 F -0.17 -1.28 14.67 2.25 0.03 -1.24 16 28 F -0.12 -1.48 13.42 2.25 0.03 -1.45 16 29 F -0.16 -1.52 17.30 2.25 0.04 -1.48 16 30 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.11 0.25 5.68 -51.93 -0.30 -0.04 16 33 H 0.41 4.63 8.39 -40.82 -0.34 4.29 16 34 H 0.09 1.39 7.90 -51.93 -0.41 0.97 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 38 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -34.13 360.83 -4.69 -38.82 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.66 Total: 6.73 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.69 Total: 3.26 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 1.08 Total: -60.11 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.10 Total: -4.18 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.13 -4.69 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506898744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.100 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds