Wall clock time and date at job start Wed Apr 1 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40210 * 126.59306 * 2 1 4 4 N 1.28767 * 108.36771 * 179.68858 * 3 2 1 5 5 C 1.34403 * 109.51941 * 0.45065 * 4 3 2 6 6 C 1.47523 * 125.76558 * 179.81363 * 5 4 3 7 7 O 1.21603 * 119.99700 * 179.68978 * 6 5 4 8 8 N 1.34777 * 120.00283 * 359.41537 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27861 * 8 6 5 10 10 H 1.09004 * 112.84690 * 334.66407 * 9 8 6 11 11 C 1.53775 * 113.61442 * 105.85931 * 9 8 6 12 12 C 1.54055 * 86.98513 * 89.16201 * 11 9 8 13 13 H 1.08997 * 113.68473 * 270.87344 * 12 11 9 14 14 C 1.52997 * 113.61805 * 139.98030 * 12 11 9 15 15 N 1.46498 * 109.47316 * 87.50799 * 14 12 11 16 16 C 1.36944 * 119.99801 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99830 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99875 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47318 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47070 * 120.00027 * 20 18 16 23 23 H 1.48496 * 109.47322 * 239.99906 * 20 18 16 24 24 C 1.53771 * 87.07743 * 25.42920 * 12 11 9 25 25 C 1.34812 * 126.59754 * 179.97438 * 2 1 3 26 26 C 1.50704 * 126.58025 * 0.03652 * 25 2 1 27 27 F 1.39899 * 109.46863 * 29.99985 * 26 25 2 28 28 F 1.39905 * 109.47193 * 149.99807 * 26 25 2 29 29 F 1.39898 * 109.47046 * 269.99921 * 26 25 2 30 30 H 1.08993 * 109.46853 * 270.04003 * 1 2 3 31 31 H 1.08998 * 109.47098 * 30.04412 * 1 2 3 32 32 H 1.08999 * 109.46977 * 150.03808 * 1 2 3 33 33 H 0.96990 * 119.99728 * 0.27139 * 8 6 5 34 34 H 1.09005 * 113.61646 * 203.66312 * 11 9 8 35 35 H 1.09001 * 113.62209 * 334.56791 * 11 9 8 36 36 H 1.09008 * 109.46686 * 207.50581 * 14 12 11 37 37 H 1.09002 * 109.47411 * 327.49911 * 14 12 11 38 38 H 0.96995 * 120.00427 * 359.97438 * 15 14 12 39 39 H 0.97004 * 119.99741 * 180.02562 * 19 18 16 40 40 H 1.09003 * 113.61690 * 220.02583 * 24 12 11 41 41 H 1.08999 * 113.61550 * 89.12060 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3008 1.1257 0.0000 4 7 3.5239 0.7230 0.0066 5 6 3.5543 -0.6207 0.0012 6 6 4.7705 -1.4556 0.0020 7 8 4.6756 -2.6679 0.0024 8 7 5.9867 -0.8748 -0.0031 9 6 7.1944 -1.7041 -0.0084 10 1 7.0312 -2.6922 0.4220 11 6 7.9143 -1.7352 -1.3669 12 6 8.7001 -0.5001 -0.8870 13 1 8.2144 0.4468 -1.1228 14 6 10.1786 -0.5234 -1.2800 15 7 10.3395 0.0668 -2.6111 16 6 11.5843 0.1550 -3.1751 17 1 12.4474 -0.2102 -2.6384 18 6 11.7366 0.7138 -4.4366 19 7 10.6848 1.1594 -5.0904 20 14 13.4347 0.8347 -5.2056 21 1 14.4418 0.2677 -4.2733 22 1 13.4563 0.0727 -6.4801 23 1 13.7557 2.2593 -5.4753 24 6 8.4362 -0.9873 0.5474 25 6 2.2687 -1.0823 0.0005 26 6 1.8326 -2.5249 0.0004 27 9 0.6046 -2.6407 -0.6598 28 9 2.7913 -3.3019 -0.6587 29 9 1.6970 -2.9712 1.3193 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5132 33 1 6.0623 0.0921 -0.0034 34 1 8.5358 -2.6189 -1.5116 35 1 7.2579 -1.5349 -2.2137 36 1 10.7562 0.0509 -0.5556 37 1 10.5347 -1.5536 -1.2937 38 1 9.5644 0.3952 -3.0930 39 1 10.7913 1.5495 -5.9721 40 1 8.2007 -0.1836 1.2452 41 1 9.2000 -1.6669 0.9252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506898744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:16 Heat of formation + Delta-G solvation = -64.928434 kcal Electronic energy + Delta-G solvation = -30527.910107 eV Core-core repulsion = 25645.017641 eV Total energy + Delta-G solvation = -4882.892466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.46330 -49.03668 -48.83409 -43.76669 -41.20672 -39.42588 -36.36924 -36.16648 -34.46592 -33.24611 -32.70247 -29.47971 -28.41530 -27.65231 -26.60267 -25.63133 -24.76029 -23.32313 -22.85263 -22.09242 -20.35433 -19.86398 -19.81541 -19.53869 -19.07339 -18.89415 -17.69064 -17.16427 -16.92702 -16.65532 -16.17045 -16.05744 -15.79602 -15.72243 -15.54621 -15.34591 -15.18141 -15.10968 -15.00298 -14.92989 -14.67171 -14.52728 -14.27768 -13.99916 -13.69104 -13.34579 -13.13981 -13.10665 -12.90768 -12.73078 -12.70257 -12.11348 -11.91901 -11.84545 -11.74467 -11.35181 -11.32443 -11.13158 -10.88370 -10.84495 -10.10544 -8.95936 -7.93652 -5.21816 -0.72346 0.21092 0.34043 1.21503 1.47587 1.48600 1.58771 1.80145 1.88737 2.16271 2.55124 2.57252 2.88905 2.97710 3.09056 3.39493 3.50481 3.59608 3.62671 3.94562 3.97437 4.00140 4.14745 4.35610 4.35980 4.50225 4.58629 4.77104 4.78676 4.88268 4.89383 4.95313 5.01783 5.18064 5.27753 5.35454 5.50562 5.65404 6.18557 6.29335 6.44716 6.93150 7.34929 8.13683 8.35477 9.30332 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002149 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.218865 B =13029.065497 C =13448.983482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.306 5.306 3 N -0.034 5.034 4 N -0.214 5.214 5 C -0.046 4.046 6 C 0.593 3.407 7 O -0.538 6.538 8 N -0.682 5.682 9 C 0.127 3.873 10 H 0.109 0.891 11 C -0.141 4.141 12 C -0.116 4.116 13 H 0.080 0.920 14 C 0.160 3.840 15 N -0.746 5.746 16 C -0.242 4.242 17 H 0.076 0.924 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.974 3.026 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.115 4.115 25 C 0.004 3.996 26 C 0.553 3.447 27 F -0.159 7.159 28 F -0.139 7.139 29 F -0.159 7.159 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.415 0.585 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.090 0.910 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.601 -5.873 16.550 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.092 5.092 3 N -0.015 5.015 4 N -0.084 5.084 5 C -0.189 4.189 6 C 0.376 3.624 7 O -0.414 6.414 8 N -0.332 5.332 9 C 0.022 3.978 10 H 0.127 0.873 11 C -0.180 4.180 12 C -0.134 4.134 13 H 0.099 0.901 14 C 0.034 3.966 15 N -0.389 5.389 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.220 1.220 24 C -0.153 4.153 25 C -0.137 4.137 26 C 0.496 3.504 27 F -0.140 7.140 28 F -0.119 7.119 29 F -0.140 7.140 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.252 0.748 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.204 0.796 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.485 -5.251 16.586 31.688 hybrid contribution 0.402 -0.226 -1.156 1.245 sum -26.083 -5.477 15.430 30.796 Atomic orbital electron populations 1.23290 0.68220 1.09179 1.08177 1.50702 1.11037 1.02729 1.44755 1.82069 0.93430 1.05669 1.20310 1.74768 1.13417 1.09094 1.11138 1.21334 0.93528 0.90794 1.13210 1.16837 0.82279 0.86375 0.76869 1.90915 1.86370 1.13215 1.50880 1.45429 1.04150 1.11232 1.72415 1.21908 0.83178 0.95662 0.97056 0.87300 1.23476 0.98600 0.98920 0.96985 1.22762 0.94922 0.98194 0.97558 0.90122 1.20837 0.94540 0.95500 0.85734 1.42618 1.06020 1.73130 1.17102 1.19715 0.87319 1.31586 0.98791 0.90577 1.25594 1.00910 1.02396 0.98302 1.69835 1.29926 1.48242 1.14247 0.85061 0.79739 0.76861 0.78048 1.18915 1.22140 1.22031 1.23236 0.95982 1.00855 0.95234 1.21648 0.92462 0.90791 1.08792 1.16750 0.75369 0.83102 0.75178 1.93186 1.43616 1.96211 1.80969 1.93448 1.62495 1.75474 1.80531 1.93286 1.95507 1.90058 1.35138 0.85530 0.84682 0.85871 0.74813 0.88911 0.93150 0.96034 0.95803 0.79643 0.94110 0.89170 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.17 11.25 127.77 1.44 1.61 16 2 N -0.31 -4.51 4.03 -355.11 -1.43 -5.94 16 3 N -0.03 -0.70 13.78 37.02 0.51 -0.19 16 4 N -0.21 -5.06 12.04 -49.99 -0.60 -5.66 16 5 C -0.05 -1.09 6.96 40.82 0.28 -0.80 16 6 C 0.59 15.56 7.76 86.69 0.67 16.24 16 7 O -0.54 -16.17 12.67 -4.04 -0.05 -16.22 16 8 N -0.68 -16.38 5.26 -443.20 -2.33 -18.71 16 9 C 0.13 3.04 4.30 45.51 0.20 3.24 16 10 H 0.11 2.58 7.50 -2.39 -0.02 2.56 16 11 C -0.14 -4.18 7.45 31.21 0.23 -3.95 16 12 C -0.12 -3.54 3.65 -10.18 -0.04 -3.58 16 13 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.16 6.31 6.10 86.38 0.53 6.84 16 15 N -0.75 -38.74 5.60 -343.44 -1.92 -40.67 16 16 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 20 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 C -0.11 -2.51 7.38 31.12 0.23 -2.28 16 25 C 0.00 0.08 6.46 41.72 0.27 0.35 16 26 C 0.55 9.96 3.24 71.24 0.23 10.19 16 27 F -0.16 -2.04 14.67 44.97 0.66 -1.38 16 28 F -0.14 -3.37 13.42 44.97 0.60 -2.76 16 29 F -0.16 -2.83 17.30 44.97 0.78 -2.05 16 30 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.12 0.21 5.68 -2.39 -0.01 0.20 16 33 H 0.42 9.22 8.39 -92.72 -0.78 8.44 16 34 H 0.09 2.74 7.90 -2.38 -0.02 2.72 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 38 H 0.37 20.69 7.67 -92.71 -0.71 19.98 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -74.02 360.83 3.50 -70.52 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.37 Total: 24.00 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.35 Total: 10.63 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -5.50 Total: -131.77 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.05 Total: -16.22 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.04 Total: -6.19 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -74.02 3.50 -70.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506898744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.588 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds