Wall clock time and date at job start Wed Apr 1 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28524 * 124.44119 * 2 1 4 4 C 1.31138 * 109.05574 * 179.68945 * 3 2 1 5 5 C 1.40924 * 105.77509 * 0.42945 * 4 3 2 6 6 C 1.47803 * 127.23554 * 179.83714 * 5 4 3 7 7 O 1.21556 * 120.00211 * 359.71150 * 6 5 4 8 8 N 1.34779 * 119.99981 * 179.71470 * 6 5 4 9 9 C 1.48141 * 127.83699 * 180.02562 * 8 6 5 10 10 C 1.54389 * 104.61949 * 140.38791 * 9 8 6 11 11 H 1.09001 * 110.34112 * 142.73667 * 10 9 8 12 12 C 1.53001 * 110.33930 * 264.98990 * 10 9 8 13 13 N 1.46502 * 109.47478 * 290.53667 * 12 10 9 14 14 C 1.36933 * 119.99926 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00049 * 359.97438 * 14 13 12 16 16 C 1.38816 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31611 * 119.99960 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99658 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47391 * 60.00023 * 18 16 14 20 20 H 1.48506 * 109.46830 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47362 * 299.99600 * 18 16 14 22 22 C 1.54276 * 104.95987 * 23.86235 * 10 9 8 23 23 H 1.09004 * 110.43668 * 241.08326 * 22 10 9 24 24 C 1.53006 * 110.34261 * 118.87448 * 22 10 9 25 25 F 1.39900 * 109.46764 * 303.00598 * 24 22 10 26 26 F 1.39897 * 109.47129 * 63.00576 * 24 22 10 27 27 F 1.39903 * 109.46814 * 183.01069 * 24 22 10 28 28 C 1.48141 * 127.83829 * 359.96610 * 8 6 5 29 29 N 1.28588 * 124.44623 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47726 * 270.02586 * 1 2 3 31 31 H 1.08999 * 109.47114 * 30.03157 * 1 2 3 32 32 H 1.09007 * 109.47144 * 150.02542 * 1 2 3 33 33 H 1.07997 * 127.11163 * 180.28577 * 4 3 2 34 34 H 1.09003 * 110.40338 * 259.17301 * 9 8 6 35 35 H 1.08998 * 110.41177 * 21.48211 * 9 8 6 36 36 H 1.09001 * 109.47007 * 50.53854 * 12 10 9 37 37 H 1.09008 * 109.46893 * 170.53883 * 12 10 9 38 38 H 0.97003 * 119.99468 * 0.02562 * 13 12 10 39 39 H 0.97003 * 120.00174 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.40570 * 100.82995 * 28 8 6 41 41 H 1.08998 * 110.51199 * 338.45166 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4658 -0.6972 0.0009 6 6 4.6487 -1.5835 0.0015 7 8 5.7663 -1.1055 0.0022 8 7 4.4880 -2.9216 0.0012 9 6 5.5414 -3.9633 0.0022 10 6 5.0081 -5.0557 0.9540 11 1 5.2713 -6.0453 0.5804 12 6 5.5674 -4.8522 2.3636 13 7 7.0023 -5.1474 2.3671 14 6 7.7218 -5.0340 3.5266 15 1 7.2315 -4.7265 4.4385 16 6 9.0816 -5.3132 3.5298 17 7 9.6791 -5.6874 2.4184 18 14 10.0632 -5.1578 5.1114 19 1 9.5053 -6.0800 6.1330 20 1 11.4821 -5.5097 4.8499 21 1 9.9828 -3.7609 5.6088 22 6 3.4764 -4.8718 0.9530 23 1 3.1205 -4.6372 1.9562 24 6 2.7895 -6.1342 0.4277 25 9 3.2704 -6.4282 -0.8527 26 9 3.0625 -7.2049 1.2857 27 9 1.4077 -5.9233 0.3699 28 6 3.2181 -3.6845 0.0010 29 7 2.1923 -1.0604 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8903 -0.5135 33 1 4.3130 1.3695 0.0128 34 1 5.6777 -4.3669 -1.0011 35 1 6.4797 -3.5548 0.3774 36 1 5.4082 -3.8188 2.6718 37 1 5.0572 -5.5209 3.0569 38 1 7.4427 -5.4231 1.5479 39 1 10.6294 -5.8821 2.4205 40 1 2.9912 -4.0445 -1.0025 41 1 2.4018 -3.0673 0.3760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507455656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:05 Heat of formation + Delta-G solvation = -46.980974 kcal Electronic energy + Delta-G solvation = -31551.986269 eV Core-core repulsion = 26669.872063 eV Total energy + Delta-G solvation = -4882.114206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14550 -47.64160 -47.57675 -43.90924 -40.01900 -37.86718 -34.70735 -34.09916 -33.15851 -32.28529 -31.15958 -29.21992 -28.29129 -26.15232 -25.74861 -24.00812 -23.15101 -22.35003 -21.69669 -20.38416 -19.82898 -18.54783 -18.21571 -17.78022 -17.56720 -17.32209 -17.14526 -16.75913 -15.75734 -15.36888 -15.02852 -14.72965 -14.55797 -14.46858 -14.09570 -14.02781 -13.90996 -13.74871 -13.72469 -13.57143 -13.42913 -13.31497 -13.28455 -12.90979 -12.46632 -12.17343 -11.94369 -11.79668 -11.67222 -11.15771 -11.02772 -10.83070 -10.73463 -10.70749 -10.54611 -10.23274 -10.07301 -9.70190 -9.69646 -8.89152 -8.78482 -6.94101 -5.75162 -3.04766 1.07338 1.71988 1.83457 2.55480 2.87077 3.15512 3.46947 3.51058 3.52026 3.58655 3.73521 3.78503 3.94717 4.35142 4.55385 4.55756 4.58005 4.66438 4.71277 4.81757 4.85082 4.91923 5.15464 5.19586 5.37483 5.43384 5.58104 5.64073 5.65585 5.77257 5.95027 6.03943 6.19389 6.27890 6.29275 6.59457 6.70543 7.38290 7.70770 7.79813 8.05729 8.42572 9.54320 10.08261 10.43275 11.47449 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003740 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.621160 B = 7484.161395 C = 9607.129502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.146 5.146 3 N -0.291 5.291 4 C 0.038 3.962 5 C -0.036 4.036 6 C 0.629 3.371 7 O -0.511 6.511 8 N -0.604 5.604 9 C 0.112 3.888 10 C -0.101 4.101 11 H 0.100 0.900 12 C 0.164 3.836 13 N -0.729 5.729 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.149 4.149 23 H 0.128 0.872 24 C 0.462 3.538 25 F -0.180 7.180 26 F -0.175 7.175 27 F -0.185 7.185 28 C 0.107 3.893 29 N -0.252 5.252 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.210 0.790 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.081 0.919 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.900 7.421 -8.410 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.048 5.048 3 N -0.130 5.130 4 C -0.145 4.145 5 C -0.199 4.199 6 C 0.414 3.586 7 O -0.384 6.384 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.121 4.121 11 H 0.118 0.882 12 C 0.036 3.964 13 N -0.374 5.374 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.170 4.170 23 H 0.146 0.854 24 C 0.407 3.593 25 F -0.161 7.161 26 F -0.156 7.156 27 F -0.167 7.167 28 C -0.017 4.017 29 N -0.101 5.101 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.227 0.773 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.584 7.816 -8.265 26.185 hybrid contribution 1.309 -0.358 0.578 1.475 sum -22.276 7.458 -7.688 24.717 Atomic orbital electron populations 1.22259 0.69703 1.06237 1.05425 1.48092 1.09233 0.99357 1.48143 1.74035 1.03844 1.15411 1.19755 1.24869 0.94296 0.93579 1.01792 1.23033 0.91066 0.94779 1.11002 1.16104 0.86056 0.79547 0.76900 1.90891 1.23708 1.73952 1.49855 1.48555 1.08794 1.04158 1.72250 1.22586 0.92849 0.86221 0.99279 1.22414 0.89644 1.00542 0.99498 0.88185 1.20667 0.87124 0.97891 0.90677 1.42279 1.02329 1.82265 1.10512 1.19125 0.90756 1.38879 0.88561 0.91252 1.24727 0.96698 1.02088 0.97128 1.69636 1.10315 1.52385 1.25616 0.86262 0.79260 0.77800 0.82812 1.21285 1.21657 1.21220 1.23514 0.98766 0.91489 1.03264 0.85416 1.20332 0.76767 0.86361 0.75806 1.93181 1.87888 1.94351 1.40715 1.93229 1.93443 1.58881 1.70093 1.93173 1.32262 1.94963 1.96294 1.22498 0.88525 0.91623 0.99079 1.74340 1.03109 1.15380 1.17264 0.88770 0.87584 0.87547 0.77346 0.90425 0.87184 0.95818 0.95693 0.78123 0.93389 0.90046 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.55 59.84 0.69 1.09 16 2 N -0.15 -1.37 4.35 -16.64 -0.07 -1.44 16 3 N -0.29 -3.15 12.01 30.90 0.37 -2.78 16 4 C 0.04 0.44 12.04 -16.83 -0.20 0.24 16 5 C -0.04 -0.47 7.06 -82.68 -0.58 -1.06 16 6 C 0.63 9.80 7.92 -12.35 -0.10 9.70 16 7 O -0.51 -9.71 17.22 5.32 0.09 -9.62 16 8 N -0.60 -8.60 3.32 -170.45 -0.57 -9.17 16 9 C 0.11 1.73 6.47 -2.41 -0.02 1.72 16 10 C -0.10 -1.53 2.39 -89.22 -0.21 -1.74 16 11 H 0.10 1.54 7.39 -51.93 -0.38 1.15 16 12 C 0.16 3.18 5.37 -4.04 -0.02 3.16 16 13 N -0.73 -18.10 5.21 -59.90 -0.31 -18.41 16 14 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C -0.15 -1.78 2.72 -89.23 -0.24 -2.02 16 23 H 0.13 1.41 7.72 -51.93 -0.40 1.01 16 24 C 0.46 5.45 2.51 37.16 0.09 5.54 16 25 F -0.18 -2.20 16.04 2.25 0.04 -2.16 16 26 F -0.18 -2.37 17.07 2.25 0.04 -2.33 16 27 F -0.19 -2.03 17.11 2.25 0.04 -1.99 16 28 C 0.11 1.20 5.98 -2.42 -0.01 1.19 16 29 N -0.25 -2.81 9.25 33.42 0.31 -2.50 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.24 8.14 -51.92 -0.42 -0.19 16 33 H 0.21 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.10 7.31 -51.93 -0.38 1.72 16 36 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 37 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.38 9.95 7.61 -40.82 -0.31 9.64 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 0.84 7.32 -51.93 -0.38 0.46 16 41 H 0.11 1.17 5.57 -51.93 -0.29 0.88 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -34.66 360.97 -4.43 -39.09 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.65 Total: 5.19 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -0.85 Total: 10.49 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.46 Total: -61.70 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.48 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.66 -4.43 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507455656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.895 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds