Wall clock time and date at job start Wed Apr 1 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28524 * 124.44119 * 2 1 4 4 C 1.31138 * 109.05574 * 179.68945 * 3 2 1 5 5 C 1.40924 * 105.77509 * 0.42945 * 4 3 2 6 6 C 1.47803 * 127.23554 * 179.83714 * 5 4 3 7 7 O 1.21556 * 120.00211 * 359.71150 * 6 5 4 8 8 N 1.34779 * 119.99981 * 179.71470 * 6 5 4 9 9 C 1.48141 * 127.83699 * 180.02562 * 8 6 5 10 10 C 1.54389 * 104.61949 * 140.38791 * 9 8 6 11 11 H 1.09001 * 110.34112 * 142.73667 * 10 9 8 12 12 C 1.53001 * 110.33930 * 264.98990 * 10 9 8 13 13 N 1.46502 * 109.47478 * 290.53667 * 12 10 9 14 14 C 1.36933 * 119.99926 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00049 * 359.97438 * 14 13 12 16 16 C 1.38816 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31611 * 119.99960 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99658 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47391 * 60.00023 * 18 16 14 20 20 H 1.48506 * 109.46830 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47362 * 299.99600 * 18 16 14 22 22 C 1.54276 * 104.95987 * 23.86235 * 10 9 8 23 23 H 1.09004 * 110.43668 * 241.08326 * 22 10 9 24 24 C 1.53006 * 110.34261 * 118.87448 * 22 10 9 25 25 F 1.39900 * 109.46764 * 303.00598 * 24 22 10 26 26 F 1.39897 * 109.47129 * 63.00576 * 24 22 10 27 27 F 1.39903 * 109.46814 * 183.01069 * 24 22 10 28 28 C 1.48141 * 127.83829 * 359.96610 * 8 6 5 29 29 N 1.28588 * 124.44623 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47726 * 270.02586 * 1 2 3 31 31 H 1.08999 * 109.47114 * 30.03157 * 1 2 3 32 32 H 1.09007 * 109.47144 * 150.02542 * 1 2 3 33 33 H 1.07997 * 127.11163 * 180.28577 * 4 3 2 34 34 H 1.09003 * 110.40338 * 259.17301 * 9 8 6 35 35 H 1.08998 * 110.41177 * 21.48211 * 9 8 6 36 36 H 1.09001 * 109.47007 * 50.53854 * 12 10 9 37 37 H 1.09008 * 109.46893 * 170.53883 * 12 10 9 38 38 H 0.97003 * 119.99468 * 0.02562 * 13 12 10 39 39 H 0.97003 * 120.00174 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.40570 * 100.82995 * 28 8 6 41 41 H 1.08998 * 110.51199 * 338.45166 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4658 -0.6972 0.0009 6 6 4.6487 -1.5835 0.0015 7 8 5.7663 -1.1055 0.0022 8 7 4.4880 -2.9216 0.0012 9 6 5.5414 -3.9633 0.0022 10 6 5.0081 -5.0557 0.9540 11 1 5.2713 -6.0453 0.5804 12 6 5.5674 -4.8522 2.3636 13 7 7.0023 -5.1474 2.3671 14 6 7.7218 -5.0340 3.5266 15 1 7.2315 -4.7265 4.4385 16 6 9.0816 -5.3132 3.5298 17 7 9.6791 -5.6874 2.4184 18 14 10.0632 -5.1578 5.1114 19 1 9.5053 -6.0800 6.1330 20 1 11.4821 -5.5097 4.8499 21 1 9.9828 -3.7609 5.6088 22 6 3.4764 -4.8718 0.9530 23 1 3.1205 -4.6372 1.9562 24 6 2.7895 -6.1342 0.4277 25 9 3.2704 -6.4282 -0.8527 26 9 3.0625 -7.2049 1.2857 27 9 1.4077 -5.9233 0.3699 28 6 3.2181 -3.6845 0.0010 29 7 2.1923 -1.0604 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8903 -0.5135 33 1 4.3130 1.3695 0.0128 34 1 5.6777 -4.3669 -1.0011 35 1 6.4797 -3.5548 0.3774 36 1 5.4082 -3.8188 2.6718 37 1 5.0572 -5.5209 3.0569 38 1 7.4427 -5.4231 1.5479 39 1 10.6294 -5.8821 2.4205 40 1 2.9912 -4.0445 -1.0025 41 1 2.4018 -3.0673 0.3760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507455656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:04 Heat of formation + Delta-G solvation = -71.621088 kcal Electronic energy + Delta-G solvation = -31553.054744 eV Core-core repulsion = 26669.872063 eV Total energy + Delta-G solvation = -4883.182682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.11163 -48.57951 -48.57045 -44.73819 -41.20701 -39.13332 -36.48141 -34.85891 -34.27421 -33.54207 -32.74325 -30.62850 -29.08144 -27.42619 -26.93568 -25.48031 -24.46832 -23.26946 -22.87360 -21.58622 -20.93510 -19.56415 -19.38240 -19.09629 -18.63669 -18.36046 -18.09807 -17.94428 -16.87574 -16.66483 -16.49499 -15.81931 -15.68964 -15.49064 -15.45824 -15.24219 -15.13220 -14.99453 -14.83668 -14.69964 -14.58628 -14.37228 -13.89671 -13.71887 -13.63110 -13.34877 -13.24753 -13.04027 -12.90697 -12.76639 -12.61572 -12.33315 -12.22373 -11.97441 -11.80981 -11.70708 -11.55456 -11.47534 -10.95095 -10.52593 -9.96248 -9.01522 -7.94780 -5.23874 0.13056 0.83340 1.16930 1.47187 1.50517 1.55983 1.56670 1.84256 2.04486 2.53973 2.65194 2.74781 2.81282 2.95542 3.37402 3.42267 3.58465 3.64155 3.77620 3.88898 3.93379 4.10253 4.26482 4.30132 4.34646 4.39474 4.45703 4.48830 4.64106 4.67970 4.69461 4.80111 4.87407 4.97421 5.03707 5.19656 5.48760 5.55223 6.24579 6.26686 6.79491 7.03617 7.33922 8.06645 8.30447 9.28305 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003740 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.621160 B = 7484.161395 C = 9607.129502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.130 5.130 3 N -0.294 5.294 4 C 0.031 3.969 5 C -0.062 4.062 6 C 0.626 3.374 7 O -0.559 6.559 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.091 4.091 11 H 0.100 0.900 12 C 0.166 3.834 13 N -0.741 5.741 14 C -0.248 4.248 15 H 0.074 0.926 16 C -0.071 4.071 17 N -0.966 5.966 18 Si 0.972 3.028 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.281 1.281 22 C -0.139 4.139 23 H 0.142 0.858 24 C 0.470 3.530 25 F -0.181 7.181 26 F -0.185 7.185 27 F -0.175 7.175 28 C 0.112 3.888 29 N -0.245 5.245 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.219 0.781 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.015 0.985 37 H 0.032 0.968 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.887 7.650 -8.203 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.035 5.035 3 N -0.135 5.135 4 C -0.152 4.152 5 C -0.222 4.222 6 C 0.413 3.587 7 O -0.436 6.436 8 N -0.336 5.336 9 C -0.008 4.008 10 C -0.111 4.111 11 H 0.118 0.882 12 C 0.040 3.960 13 N -0.384 5.384 14 C -0.380 4.380 15 H 0.092 0.908 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.801 3.199 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.207 1.207 22 C -0.160 4.160 23 H 0.160 0.840 24 C 0.416 3.584 25 F -0.162 7.162 26 F -0.166 7.166 27 F -0.156 7.156 28 C -0.010 4.010 29 N -0.095 5.095 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.235 0.765 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.050 0.950 38 H 0.209 0.791 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.643 8.038 -8.048 28.970 hybrid contribution 2.037 -0.392 0.499 2.134 sum -24.606 7.646 -7.549 26.850 Atomic orbital electron populations 1.22861 0.66557 1.08345 1.07352 1.48728 1.10773 0.98552 1.45443 1.74058 1.03537 1.15846 1.20050 1.25086 0.95105 0.93328 1.01649 1.22626 0.90967 0.94827 1.13777 1.16451 0.86301 0.79959 0.75974 1.90854 1.25719 1.74857 1.52159 1.48598 1.09571 1.03872 1.71600 1.22430 0.91684 0.86571 1.00071 1.22178 0.91960 1.00308 0.96638 0.88172 1.20749 0.84518 0.97153 0.93619 1.42460 1.04466 1.82162 1.09352 1.19533 0.91333 1.37500 0.89640 0.90832 1.25535 0.97873 1.02777 1.00202 1.69791 1.10168 1.54061 1.27582 0.85245 0.77422 0.77915 0.79368 1.20148 1.22041 1.20741 1.23430 0.96101 0.92015 1.04458 0.84041 1.20137 0.77113 0.85671 0.75519 1.93187 1.87975 1.94334 1.40751 1.93217 1.93577 1.59374 1.70468 1.93197 1.31351 1.94850 1.96226 1.22655 0.87396 0.91017 0.99963 1.74253 1.02370 1.15956 1.16944 0.86853 0.85625 0.85444 0.76486 0.88598 0.91356 0.96682 0.94965 0.79132 0.93935 0.88289 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.55 127.77 1.48 1.82 16 2 N -0.13 -2.09 4.35 -206.55 -0.90 -2.99 16 3 N -0.29 -5.85 12.01 -56.16 -0.67 -6.52 16 4 C 0.03 0.69 12.04 85.45 1.03 1.72 16 5 C -0.06 -1.57 7.06 42.24 0.30 -1.27 16 6 C 0.63 19.83 7.92 86.77 0.69 20.52 16 7 O -0.56 -22.34 17.22 -3.89 -0.07 -22.40 16 8 N -0.60 -16.99 3.32 -811.47 -2.69 -19.69 16 9 C 0.11 3.60 6.47 86.54 0.56 4.16 16 10 C -0.09 -2.71 2.39 -9.89 -0.02 -2.74 16 11 H 0.10 3.02 7.39 -2.39 -0.02 3.01 16 12 C 0.17 6.45 5.37 86.38 0.46 6.92 16 13 N -0.74 -37.61 5.21 -343.43 -1.79 -39.39 16 14 C -0.25 -14.07 9.99 84.04 0.84 -13.23 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 17 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 18 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 C -0.14 -3.03 2.72 -9.90 -0.03 -3.06 16 23 H 0.14 2.76 7.72 -2.39 -0.02 2.74 16 24 C 0.47 9.92 2.51 71.98 0.18 10.10 16 25 F -0.18 -4.01 16.04 44.97 0.72 -3.28 16 26 F -0.18 -4.64 17.07 44.97 0.77 -3.87 16 27 F -0.17 -3.26 17.11 44.97 0.77 -2.49 16 28 C 0.11 2.28 5.98 86.53 0.52 2.80 16 29 N -0.24 -4.90 9.25 -48.17 -0.45 -5.35 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.22 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.07 2.76 7.31 -2.39 -0.02 2.75 16 36 H 0.02 0.62 8.13 -2.39 -0.02 0.60 16 37 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.38 20.13 7.61 -92.71 -0.71 19.42 16 39 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.10 1.73 7.32 -2.39 -0.02 1.71 16 41 H 0.13 2.27 5.57 -2.39 -0.01 2.26 16 Total: -1.00 -76.31 360.97 4.87 -71.43 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.40 Total: 20.90 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 6.47 Total: 24.07 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -6.21 Total: -133.36 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.26 Total: -9.64 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.31 4.87 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507455656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.186 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds