Wall clock time and date at job start Wed Apr 1 2020 04:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00210 * 2 1 4 4 C 1.52999 * 109.47063 * 270.00376 * 3 2 1 5 5 H 1.08996 * 109.47600 * 60.00012 * 4 3 2 6 6 O 1.42900 * 109.47359 * 299.99560 * 4 3 2 7 7 C 1.53005 * 109.47174 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47360 * 184.99878 * 7 4 3 9 9 C 1.36938 * 120.00303 * 179.72777 * 8 7 4 10 10 H 1.08001 * 119.99787 * 0.26842 * 9 8 7 11 11 C 1.38809 * 120.00112 * 180.27827 * 9 8 7 12 12 N 1.31617 * 120.00022 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99822 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47045 * 59.99532 * 13 11 9 15 15 H 1.48502 * 109.46957 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47073 * 300.00010 * 13 11 9 17 17 C 1.34779 * 120.00056 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00416 * 175.48701 * 17 2 1 19 19 C 1.47399 * 119.99810 * 355.48794 * 17 2 1 20 20 C 1.38959 * 120.65320 * 48.34954 * 19 17 2 21 21 C 1.38733 * 120.73223 * 179.69460 * 20 19 17 22 22 C 1.37505 * 121.67612 * 0.61538 * 21 20 19 23 23 F 1.35103 * 119.85361 * 179.69266 * 22 21 20 24 24 C 1.40591 * 120.29650 * 359.67613 * 22 21 20 25 25 C 1.40582 * 122.24654 * 179.97438 * 24 22 21 26 26 C 1.36316 * 118.64423 * 180.02562 * 25 24 22 27 27 N 1.32487 * 121.87898 * 0.04618 * 26 25 24 28 28 C 1.31368 * 122.68935 * 359.97438 * 27 26 25 29 29 C 1.40014 * 119.84584 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47691 * 95.16395 * 1 2 3 31 31 H 1.09000 * 109.47093 * 215.17280 * 1 2 3 32 32 H 1.09004 * 109.46943 * 335.16644 * 1 2 3 33 33 H 1.09000 * 109.47186 * 150.00654 * 3 2 1 34 34 H 1.08995 * 109.47179 * 30.00098 * 3 2 1 35 35 H 0.96700 * 114.00633 * 300.00486 * 6 4 3 36 36 H 1.09008 * 109.46820 * 65.00112 * 7 4 3 37 37 H 1.08993 * 109.47053 * 305.00357 * 7 4 3 38 38 H 0.97001 * 120.00107 * 359.97438 * 8 7 4 39 39 H 0.97006 * 119.99565 * 180.02562 * 12 11 9 40 40 H 1.07995 * 119.63379 * 0.02562 * 20 19 17 41 41 H 1.07994 * 119.16463 * 180.29018 * 21 20 19 42 42 H 1.07994 * 120.67676 * 0.02562 * 25 24 22 43 43 H 1.08001 * 119.05896 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.07581 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2169 3.0358 -1.4425 8 7 3.3568 3.5188 -2.8184 9 6 4.0058 4.6987 -3.0673 10 1 4.4183 5.2710 -2.2495 11 6 4.1332 5.1593 -4.3705 12 7 3.6308 4.4618 -5.3671 13 14 5.0179 6.7692 -4.7098 14 1 6.4179 6.6768 -4.2233 15 1 5.0185 7.0353 -6.1708 16 1 4.3211 7.8751 -4.0050 17 6 2.1389 -1.1672 -0.0005 18 8 3.3521 -1.1689 -0.0834 19 6 1.4053 -2.4418 0.0993 20 6 0.3049 -2.6913 -0.7117 21 6 -0.3830 -3.8928 -0.6235 22 6 -0.0154 -4.8714 0.2699 23 9 -0.7154 -6.0254 0.3289 24 6 1.0857 -4.6764 1.1220 25 6 1.4969 -5.6485 2.0507 26 6 2.5748 -5.3821 2.8414 27 7 3.2386 -4.2386 2.7576 28 6 2.9093 -3.2873 1.9136 29 6 1.8166 -3.4641 1.0561 30 1 -0.3634 -0.0925 -1.0234 31 1 -0.3633 -0.8400 0.5920 32 1 -0.3633 0.9327 0.4316 33 1 3.1500 1.1383 0.5137 34 1 1.6085 2.0283 0.5138 35 1 4.0872 0.5460 -1.7128 36 1 4.2053 2.8851 -1.0081 37 1 2.6693 3.7711 -0.8531 38 1 2.9866 3.0047 -3.5530 39 1 3.7202 4.7835 -6.2779 40 1 -0.0152 -1.9437 -1.4223 41 1 -1.2319 -4.0620 -1.2694 42 1 0.9695 -6.5870 2.1358 43 1 2.8967 -6.1243 3.5569 44 1 3.4805 -2.3714 1.8806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507500497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:03 Heat of formation + Delta-G solvation = -48.250148 kcal Electronic energy + Delta-G solvation = -29819.769847 eV Core-core repulsion = 25459.537384 eV Total energy + Delta-G solvation = -4360.232463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.51680 -41.30251 -39.92034 -37.61570 -37.12941 -35.42491 -33.98993 -33.13616 -31.71126 -31.35536 -30.43365 -29.08546 -27.15811 -25.84649 -24.77888 -24.21610 -23.46003 -22.38721 -21.17272 -19.97736 -18.93260 -18.22388 -17.86849 -17.15533 -16.92566 -16.69173 -16.25462 -16.06185 -15.62247 -15.43675 -15.21481 -14.96035 -14.65073 -14.38310 -14.36979 -14.08601 -14.03608 -13.61278 -13.31119 -13.02208 -13.00755 -12.72902 -12.65756 -12.40408 -12.27922 -12.03501 -11.93866 -11.51476 -10.93684 -10.79405 -10.69511 -10.55644 -10.18496 -10.13197 -9.92806 -9.77070 -9.71114 -9.63147 -8.88261 -8.64443 -8.44678 -6.91263 -5.73956 -3.03397 -0.41015 0.29862 1.10941 2.19449 2.59693 2.74417 3.44542 3.44958 3.49126 3.50459 3.50702 3.92534 3.95358 4.10098 4.13990 4.29477 4.40967 4.57732 4.74173 4.78077 4.88234 4.92798 4.97753 5.08306 5.17230 5.22376 5.25778 5.31481 5.41530 5.48951 5.52820 5.54345 5.62001 5.62710 5.70301 5.96919 6.07000 6.17629 6.20821 6.34086 6.52345 6.73620 7.10446 7.53173 7.69265 7.91057 8.20733 8.44422 9.55588 10.13514 10.48926 11.48400 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002121 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.878774 B =13196.884274 C =13783.939207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.599 5.599 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.566 3.434 18 O -0.516 6.516 19 C -0.095 4.095 20 C -0.061 4.061 21 C -0.135 4.135 22 C 0.119 3.881 23 F -0.127 7.127 24 C -0.053 4.053 25 C -0.151 4.151 26 C 0.084 3.916 27 N -0.477 5.477 28 C 0.157 3.843 29 C -0.060 4.060 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.375 0.625 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 -20.624 17.119 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.353 3.647 18 O -0.393 6.393 19 C -0.101 4.101 20 C -0.080 4.080 21 C -0.155 4.155 22 C 0.099 3.901 23 F -0.105 7.105 24 C -0.059 4.059 25 C -0.171 4.171 26 C -0.060 4.060 27 N -0.185 5.185 28 C -0.012 4.012 29 C -0.063 4.063 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.223 0.777 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.177 0.823 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.281 -20.527 17.331 29.138 hybrid contribution -0.246 0.414 -0.805 0.938 sum -11.526 -20.113 16.526 28.470 Atomic orbital electron populations 1.22070 0.79411 1.03651 1.02220 1.47597 1.07001 1.05762 1.72728 1.22383 0.98297 0.84014 0.99120 1.22483 0.95824 0.88414 0.90763 0.88628 1.86539 1.33200 1.58781 1.56770 1.21240 0.96823 0.92448 0.89775 1.42235 1.68309 1.25046 1.01406 1.19173 1.28441 0.97614 0.92188 0.91314 1.24760 1.01509 0.99021 0.95633 1.69672 1.50330 1.39207 0.98665 0.86259 0.79538 0.83422 0.76885 1.21249 1.21672 1.21284 1.17818 0.87069 0.82931 0.76884 1.90804 1.13146 1.86746 1.48572 1.20949 0.96505 0.94628 0.97993 1.21368 0.92373 0.96705 0.97552 1.21029 1.02211 0.93051 0.99194 1.17600 0.91624 0.83246 0.97587 1.91526 1.77094 1.46588 1.95335 1.17997 0.95457 0.95052 0.97426 1.21855 0.99121 0.99705 0.96427 1.22328 0.91814 0.94303 0.97588 1.67594 1.29343 1.01339 1.20200 1.23401 0.91705 0.97940 0.88198 1.19489 0.96969 0.92512 0.97312 0.91908 0.91001 0.90264 0.89247 0.89232 0.77686 0.96074 0.95811 0.77756 0.93453 0.83243 0.83442 0.83789 0.82340 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.10 59.84 0.54 1.03 16 2 N -0.60 -6.32 2.83 -182.87 -0.52 -6.84 16 3 C 0.08 0.99 5.18 -4.04 -0.02 0.97 16 4 C 0.09 1.36 3.27 -26.73 -0.09 1.27 16 5 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -9.94 12.00 -48.58 -0.58 -10.52 16 7 C 0.13 2.45 5.90 -4.04 -0.02 2.43 16 8 N -0.73 -18.65 5.55 -59.91 -0.33 -18.98 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 13 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.57 6.92 6.34 -12.53 -0.08 6.84 16 18 O -0.52 -7.84 13.66 -8.08 -0.11 -7.95 16 19 C -0.10 -0.99 5.08 -102.82 -0.52 -1.51 16 20 C -0.06 -0.49 7.77 -39.13 -0.30 -0.79 16 21 C -0.13 -0.96 9.90 -39.67 -0.39 -1.35 16 22 C 0.12 1.01 7.28 -38.96 -0.28 0.73 16 23 F -0.13 -1.07 16.72 2.25 0.04 -1.03 16 24 C -0.05 -0.51 5.75 -106.80 -0.61 -1.12 16 25 C -0.15 -1.25 9.70 -39.39 -0.38 -1.63 16 26 C 0.08 0.73 11.07 -17.96 -0.20 0.53 16 27 N -0.48 -5.36 10.30 -13.23 -0.14 -5.50 16 28 C 0.16 1.79 10.53 -17.08 -0.18 1.61 16 29 C -0.06 -0.64 5.90 -104.82 -0.62 -1.26 16 30 H 0.06 0.41 7.06 -51.93 -0.37 0.04 16 31 H 0.07 0.42 6.26 -51.93 -0.33 0.09 16 32 H 0.08 0.45 7.83 -51.93 -0.41 0.04 16 33 H 0.09 1.09 7.49 -51.93 -0.39 0.71 16 34 H 0.09 0.84 7.86 -51.93 -0.41 0.43 16 35 H 0.38 6.46 8.32 45.56 0.38 6.84 16 36 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.39 10.76 7.67 -40.82 -0.31 10.45 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.15 0.99 6.24 -52.49 -0.33 0.66 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.14 0.85 7.81 -52.49 -0.41 0.44 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.18 2.02 6.47 -52.49 -0.34 1.68 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -35.09 372.93 -8.30 -43.39 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.57 Total: 11.99 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.41 Total: 0.22 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.26 Total: -59.29 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.69 Total: -18.48 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.09 -8.30 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507500497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.861 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds