Wall clock time and date at job start Wed Apr 1 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00210 * 2 1 4 4 C 1.52999 * 109.47063 * 270.00376 * 3 2 1 5 5 H 1.08996 * 109.47600 * 60.00012 * 4 3 2 6 6 O 1.42900 * 109.47359 * 299.99560 * 4 3 2 7 7 C 1.53005 * 109.47174 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47360 * 184.99878 * 7 4 3 9 9 C 1.36938 * 120.00303 * 179.72777 * 8 7 4 10 10 H 1.08001 * 119.99787 * 0.26842 * 9 8 7 11 11 C 1.38809 * 120.00112 * 180.27827 * 9 8 7 12 12 N 1.31617 * 120.00022 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99822 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47045 * 59.99532 * 13 11 9 15 15 H 1.48502 * 109.46957 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47073 * 300.00010 * 13 11 9 17 17 C 1.34779 * 120.00056 * 180.02562 * 2 1 3 18 18 O 1.21606 * 120.00416 * 175.48701 * 17 2 1 19 19 C 1.47399 * 119.99810 * 355.48794 * 17 2 1 20 20 C 1.38959 * 120.65320 * 48.34954 * 19 17 2 21 21 C 1.38733 * 120.73223 * 179.69460 * 20 19 17 22 22 C 1.37505 * 121.67612 * 0.61538 * 21 20 19 23 23 F 1.35103 * 119.85361 * 179.69266 * 22 21 20 24 24 C 1.40591 * 120.29650 * 359.67613 * 22 21 20 25 25 C 1.40582 * 122.24654 * 179.97438 * 24 22 21 26 26 C 1.36316 * 118.64423 * 180.02562 * 25 24 22 27 27 N 1.32487 * 121.87898 * 0.04618 * 26 25 24 28 28 C 1.31368 * 122.68935 * 359.97438 * 27 26 25 29 29 C 1.40014 * 119.84584 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47691 * 95.16395 * 1 2 3 31 31 H 1.09000 * 109.47093 * 215.17280 * 1 2 3 32 32 H 1.09004 * 109.46943 * 335.16644 * 1 2 3 33 33 H 1.09000 * 109.47186 * 150.00654 * 3 2 1 34 34 H 1.08995 * 109.47179 * 30.00098 * 3 2 1 35 35 H 0.96700 * 114.00633 * 300.00486 * 6 4 3 36 36 H 1.09008 * 109.46820 * 65.00112 * 7 4 3 37 37 H 1.08993 * 109.47053 * 305.00357 * 7 4 3 38 38 H 0.97001 * 120.00107 * 359.97438 * 8 7 4 39 39 H 0.97006 * 119.99565 * 180.02562 * 12 11 9 40 40 H 1.07995 * 119.63379 * 0.02562 * 20 19 17 41 41 H 1.07994 * 119.16463 * 180.29018 * 21 20 19 42 42 H 1.07994 * 120.67676 * 0.02562 * 25 24 22 43 43 H 1.08001 * 119.05896 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.07581 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2169 3.0358 -1.4425 8 7 3.3568 3.5188 -2.8184 9 6 4.0058 4.6987 -3.0673 10 1 4.4183 5.2710 -2.2495 11 6 4.1332 5.1593 -4.3705 12 7 3.6308 4.4618 -5.3671 13 14 5.0179 6.7692 -4.7098 14 1 6.4179 6.6768 -4.2233 15 1 5.0185 7.0353 -6.1708 16 1 4.3211 7.8751 -4.0050 17 6 2.1389 -1.1672 -0.0005 18 8 3.3521 -1.1689 -0.0834 19 6 1.4053 -2.4418 0.0993 20 6 0.3049 -2.6913 -0.7117 21 6 -0.3830 -3.8928 -0.6235 22 6 -0.0154 -4.8714 0.2699 23 9 -0.7154 -6.0254 0.3289 24 6 1.0857 -4.6764 1.1220 25 6 1.4969 -5.6485 2.0507 26 6 2.5748 -5.3821 2.8414 27 7 3.2386 -4.2386 2.7576 28 6 2.9093 -3.2873 1.9136 29 6 1.8166 -3.4641 1.0561 30 1 -0.3634 -0.0925 -1.0234 31 1 -0.3633 -0.8400 0.5920 32 1 -0.3633 0.9327 0.4316 33 1 3.1500 1.1383 0.5137 34 1 1.6085 2.0283 0.5138 35 1 4.0872 0.5460 -1.7128 36 1 4.2053 2.8851 -1.0081 37 1 2.6693 3.7711 -0.8531 38 1 2.9866 3.0047 -3.5530 39 1 3.7202 4.7835 -6.2779 40 1 -0.0152 -1.9437 -1.4223 41 1 -1.2319 -4.0620 -1.2694 42 1 0.9695 -6.5870 2.1358 43 1 2.8967 -6.1243 3.5569 44 1 3.4805 -2.3714 1.8806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507500497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:02 Heat of formation + Delta-G solvation = -73.077442 kcal Electronic energy + Delta-G solvation = -29820.846440 eV Core-core repulsion = 25459.537384 eV Total energy + Delta-G solvation = -4361.309055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.15672 -42.04533 -40.79098 -38.73564 -38.03992 -36.45640 -35.83887 -33.86463 -33.18845 -32.39530 -31.46820 -30.22194 -28.01854 -27.14654 -25.68245 -24.93198 -24.77139 -23.60386 -22.57432 -20.78961 -19.62818 -19.22216 -18.90537 -18.63302 -17.85169 -17.63937 -17.12895 -16.86952 -16.54940 -16.51334 -16.25235 -16.09883 -15.99341 -15.43250 -15.25191 -15.11813 -14.89692 -14.72225 -14.61631 -14.12706 -13.99117 -13.76183 -13.64210 -13.40162 -13.30576 -12.96104 -12.90310 -12.71783 -12.61264 -12.48394 -12.20279 -12.01816 -11.80548 -11.31292 -11.13264 -10.96318 -10.89545 -10.66803 -10.38979 -9.61403 -9.13058 -9.00447 -7.94246 -5.23876 -1.10747 -0.37245 0.38724 1.44844 1.46943 1.50661 1.56704 1.79545 1.94072 2.56218 2.75775 2.81223 3.21713 3.29703 3.37316 3.42343 3.48670 3.56566 3.63058 3.74928 3.79284 4.07272 4.19131 4.22512 4.28021 4.31563 4.45193 4.48760 4.55851 4.56735 4.63060 4.68188 4.76667 4.82070 4.87839 4.93822 4.95040 4.98159 5.26709 5.39393 5.43693 5.48431 5.53710 6.26644 6.27355 6.80722 6.83384 7.04673 7.33133 8.09969 8.32284 9.28999 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002121 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.878774 B =13196.884274 C =13783.939207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.596 5.596 3 C 0.095 3.905 4 C 0.096 3.904 5 H 0.093 0.907 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.077 0.923 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.274 1.274 17 C 0.561 3.439 18 O -0.557 6.557 19 C -0.116 4.116 20 C -0.046 4.046 21 C -0.125 4.125 22 C 0.118 3.882 23 F -0.125 7.125 24 C -0.067 4.067 25 C -0.143 4.143 26 C 0.073 3.927 27 N -0.498 5.498 28 C 0.137 3.863 29 C -0.069 4.069 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.376 0.624 36 H 0.020 0.980 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.188 0.812 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 -21.147 18.091 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.327 5.327 3 C -0.028 4.028 4 C 0.036 3.964 5 H 0.111 0.889 6 O -0.372 6.372 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.095 0.905 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.350 3.650 18 O -0.436 6.436 19 C -0.121 4.121 20 C -0.065 4.065 21 C -0.145 4.145 22 C 0.099 3.901 23 F -0.103 7.103 24 C -0.074 4.074 25 C -0.162 4.162 26 C -0.071 4.071 27 N -0.207 5.207 28 C -0.032 4.032 29 C -0.072 4.072 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.224 0.776 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.188 0.812 43 H 0.204 0.796 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.225 -21.042 18.364 30.902 hybrid contribution 0.285 0.480 -1.042 1.182 sum -12.940 -20.562 17.322 29.838 Atomic orbital electron populations 1.22354 0.77017 1.05396 1.03300 1.47664 1.08456 1.04767 1.71829 1.22181 0.99087 0.85413 0.96134 1.22424 0.94531 0.86244 0.93237 0.88895 1.86509 1.33547 1.59319 1.57837 1.21463 0.97531 0.94669 0.86808 1.42461 1.68049 1.24439 1.03458 1.19630 1.27515 0.98310 0.92499 0.90476 1.25633 1.03096 1.02714 0.95604 1.69843 1.52354 1.41123 0.98743 0.85173 0.78512 0.79556 0.76270 1.20558 1.22218 1.19951 1.18185 0.86769 0.83952 0.76127 1.90776 1.14972 1.87412 1.50484 1.20824 0.97783 0.93977 0.99499 1.21587 0.91074 0.97307 0.96498 1.21323 1.02496 0.91934 0.98710 1.17668 0.91288 0.83596 0.97583 1.91536 1.76927 1.46512 1.95320 1.18217 0.95959 0.94966 0.98209 1.22175 0.98617 1.00180 0.95250 1.22804 0.91946 0.94025 0.98368 1.67552 1.30305 1.02250 1.20551 1.23230 0.92600 0.97975 0.89414 1.19509 0.97006 0.93233 0.97460 0.91024 0.89565 0.88410 0.90024 0.86110 0.77582 0.96164 0.93999 0.79422 0.94038 0.81605 0.80330 0.81231 0.79550 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 9.10 127.77 1.16 1.86 16 2 N -0.60 -11.90 2.83 -850.72 -2.41 -14.30 16 3 C 0.10 2.12 5.18 86.38 0.45 2.57 16 4 C 0.10 2.98 3.27 30.60 0.10 3.08 16 5 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 6 O -0.57 -20.94 12.00 -136.22 -1.63 -22.58 16 7 C 0.12 4.71 5.90 86.38 0.51 5.22 16 8 N -0.74 -38.39 5.55 -343.45 -1.91 -40.29 16 9 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 12 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 13 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 C 0.56 13.77 6.34 86.66 0.55 14.32 16 18 O -0.56 -17.73 13.66 8.71 0.12 -17.61 16 19 C -0.12 -2.32 5.08 -18.70 -0.09 -2.42 16 20 C -0.05 -0.64 7.77 22.56 0.18 -0.46 16 21 C -0.12 -1.41 9.90 22.22 0.22 -1.19 16 22 C 0.12 1.73 7.28 22.67 0.17 1.90 16 23 F -0.12 -1.75 16.72 44.97 0.75 -1.00 16 24 C -0.07 -1.21 5.75 -21.27 -0.12 -1.33 16 25 C -0.14 -2.13 9.70 22.39 0.22 -1.91 16 26 C 0.07 1.21 11.07 84.15 0.93 2.14 16 27 N -0.50 -11.48 10.30 -195.77 -2.02 -13.50 16 28 C 0.14 3.29 10.53 85.19 0.90 4.18 16 29 C -0.07 -1.48 5.90 -19.99 -0.12 -1.60 16 30 H 0.07 0.73 7.06 -2.39 -0.02 0.71 16 31 H 0.09 0.77 6.26 -2.39 -0.01 0.75 16 32 H 0.10 0.79 7.83 -2.38 -0.02 0.77 16 33 H 0.08 1.98 7.49 -2.39 -0.02 1.96 16 34 H 0.12 1.94 7.86 -2.39 -0.02 1.92 16 35 H 0.38 13.50 8.32 -74.06 -0.62 12.88 16 36 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 39 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 40 H 0.17 1.72 6.24 -2.91 -0.02 1.71 16 41 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.17 1.55 7.81 -2.91 -0.02 1.53 16 43 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.16 4.13 6.47 -2.91 -0.02 4.11 16 Total: -1.00 -77.68 372.93 1.31 -76.36 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.25 Total: 35.81 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.35 Total: 9.05 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -6.05 Total: -128.69 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.52 Total: -40.19 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.75 Total: -1.00 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.68 1.31 -76.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507500497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.286 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds