Wall clock time and date at job start Wed Apr 1 2020 04:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00081 * 2 1 4 4 C 1.53004 * 109.47194 * 270.27358 * 3 2 1 5 5 H 1.09006 * 109.46862 * 305.00418 * 4 3 2 6 6 O 1.42899 * 109.46810 * 64.99838 * 4 3 2 7 7 C 1.52997 * 109.47127 * 185.00151 * 4 3 2 8 8 N 1.46506 * 109.46790 * 179.97438 * 7 4 3 9 9 C 1.36938 * 119.99454 * 179.97438 * 8 7 4 10 10 H 1.07992 * 120.00317 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99496 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99937 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99978 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46727 * 90.00277 * 13 11 9 15 15 H 1.48500 * 109.47225 * 210.00287 * 13 11 9 16 16 H 1.48501 * 109.46939 * 330.00609 * 13 11 9 17 17 C 1.34774 * 119.99680 * 180.27022 * 2 1 3 18 18 O 1.21608 * 119.99789 * 174.77274 * 17 2 1 19 19 C 1.47397 * 120.00119 * 354.77670 * 17 2 1 20 20 C 1.38955 * 120.65239 * 315.32254 * 19 17 2 21 21 C 1.38736 * 120.73162 * 179.69626 * 20 19 17 22 22 C 1.37500 * 121.67789 * 0.61466 * 21 20 19 23 23 F 1.35103 * 119.85332 * 179.69219 * 22 21 20 24 24 C 1.40589 * 120.29352 * 359.66711 * 22 21 20 25 25 C 1.40588 * 122.24779 * 179.97438 * 24 22 21 26 26 C 1.36312 * 118.65061 * 180.02562 * 25 24 22 27 27 N 1.32493 * 121.87309 * 0.04586 * 26 25 24 28 28 C 1.31359 * 122.68821 * 359.97215 * 27 26 25 29 29 C 1.40013 * 119.85202 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47248 * 264.89857 * 1 2 3 31 31 H 1.09007 * 109.46901 * 24.89160 * 1 2 3 32 32 H 1.08994 * 109.46974 * 144.89054 * 1 2 3 33 33 H 1.09006 * 109.47297 * 30.27387 * 3 2 1 34 34 H 1.08996 * 109.47049 * 150.27641 * 3 2 1 35 35 H 0.96695 * 113.99885 * 60.00792 * 6 4 3 36 36 H 1.08997 * 109.46924 * 299.99974 * 7 4 3 37 37 H 1.08996 * 109.47347 * 60.00104 * 7 4 3 38 38 H 0.96993 * 119.99830 * 0.02562 * 8 7 4 39 39 H 0.97005 * 119.99477 * 180.02562 * 12 11 9 40 40 H 1.08002 * 119.63411 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.16222 * 180.28085 * 21 20 19 42 42 H 1.08004 * 120.67599 * 0.02562 * 25 24 22 43 43 H 1.07995 * 119.06398 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.07211 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4466 1.7138 -1.4425 5 1 2.9561 0.9177 -1.9856 6 8 1.1975 1.9984 -2.0755 7 6 3.3179 2.9714 -1.4449 8 7 3.5569 3.3972 -2.8262 9 6 4.3161 4.5087 -3.0784 10 1 4.7390 5.0710 -2.2591 11 6 4.5420 4.9124 -4.3872 12 7 4.0262 4.2273 -5.3856 13 14 5.5783 6.4281 -4.7313 14 1 7.0029 6.0326 -4.8699 15 1 5.1174 7.0676 -5.9898 16 1 5.4383 7.3889 -3.6077 17 6 2.1389 -1.1672 -0.0055 18 8 3.3512 -1.1690 -0.1015 19 6 1.4064 -2.4416 0.1047 20 6 0.3861 -2.5940 1.0355 21 6 -0.3086 -3.7907 1.1364 22 6 -0.0106 -4.8683 0.3361 23 9 -0.7068 -6.0184 0.4699 24 6 1.0151 -4.7785 -0.6213 25 6 1.3544 -5.8543 -1.4603 26 6 2.3623 -5.6868 -2.3627 27 7 3.0252 -4.5444 -2.4670 28 6 2.7612 -3.4998 -1.7156 29 6 1.7430 -3.5702 -0.7571 30 1 -0.3633 -0.0914 1.0235 31 1 -0.3633 0.9323 -0.4326 32 1 -0.3633 -0.8406 -0.5910 33 1 1.6106 2.0272 0.5181 34 1 3.1521 1.1371 0.5095 35 1 0.6888 2.6989 -1.6446 36 1 2.8085 3.7674 -0.9019 37 1 4.2707 2.7543 -0.9621 38 1 3.1767 2.8924 -3.5620 39 1 4.1844 4.5093 -6.3001 40 1 0.1279 -1.7703 1.6847 41 1 -1.1001 -3.8799 1.8658 42 1 0.8273 -6.7945 -1.3912 43 1 2.6282 -6.5087 -3.0108 44 1 3.3283 -2.5887 -1.8368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507500498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:07 Heat of formation + Delta-G solvation = -48.047483 kcal Electronic energy + Delta-G solvation = -29870.546465 eV Core-core repulsion = 25510.322790 eV Total energy + Delta-G solvation = -4360.223675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.51948 -41.27494 -39.91733 -37.68756 -37.26451 -35.37199 -34.00149 -33.10637 -31.67615 -31.41118 -30.41380 -29.15095 -27.03250 -25.87509 -24.74460 -24.18636 -23.43729 -22.42214 -21.22456 -20.00537 -18.89305 -18.19642 -17.85900 -17.14606 -16.92910 -16.73348 -16.23581 -15.95398 -15.68075 -15.37833 -15.21916 -15.13483 -14.53483 -14.43557 -14.29593 -14.25680 -14.00199 -13.56480 -13.35597 -13.02177 -12.93421 -12.75383 -12.63563 -12.41179 -12.24568 -12.02900 -11.92038 -11.56738 -10.92489 -10.81050 -10.73051 -10.50624 -10.23389 -10.12910 -9.84331 -9.80672 -9.68458 -9.68201 -8.87335 -8.66189 -8.42361 -6.89665 -5.72234 -3.01829 -0.39503 0.33362 1.15071 2.16854 2.52020 2.82894 3.45866 3.46303 3.50313 3.52407 3.57015 3.94680 3.96962 4.07907 4.21404 4.33799 4.43097 4.56118 4.70476 4.79170 4.86789 4.96165 4.97010 5.10758 5.16830 5.19435 5.23275 5.34022 5.50356 5.52243 5.55613 5.57588 5.62916 5.64965 5.71615 5.96887 6.09036 6.20897 6.25601 6.34584 6.54262 6.73542 7.07773 7.63516 7.70948 7.85855 8.00149 8.45836 9.57289 10.15158 10.50838 11.50082 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002341 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.074416 B =11958.893208 C =12971.488511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.597 5.597 3 C 0.086 3.914 4 C 0.085 3.915 5 H 0.102 0.898 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.557 3.443 18 O -0.520 6.520 19 C -0.096 4.096 20 C -0.063 4.063 21 C -0.139 4.139 22 C 0.122 3.878 23 F -0.127 7.127 24 C -0.053 4.053 25 C -0.155 4.155 26 C 0.087 3.913 27 N -0.474 5.474 28 C 0.160 3.840 29 C -0.060 4.060 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.366 0.634 36 H 0.019 0.981 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.160 0.840 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -19.618 16.596 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.120 0.880 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.577 5.577 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.345 3.655 18 O -0.397 6.397 19 C -0.101 4.101 20 C -0.082 4.082 21 C -0.159 4.159 22 C 0.103 3.897 23 F -0.105 7.105 24 C -0.059 4.059 25 C -0.174 4.174 26 C -0.057 4.057 27 N -0.182 5.182 28 C -0.009 4.009 29 C -0.063 4.063 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.224 0.776 39 H 0.065 0.935 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.177 0.823 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.242 -20.060 15.491 28.147 hybrid contribution -0.652 0.787 0.629 1.200 sum -12.894 -19.274 16.120 28.242 Atomic orbital electron populations 1.22010 0.79016 1.04513 1.01128 1.47632 1.07302 1.05550 1.72387 1.22328 0.98414 0.84015 0.98882 1.22559 0.85183 0.98291 0.91459 0.88010 1.86637 1.32151 1.59045 1.57560 1.21210 0.96384 0.92814 0.89806 1.42237 1.61759 1.32223 1.00787 1.19209 1.23748 1.02626 0.91818 0.91278 1.24766 1.01145 0.99402 0.95604 1.69687 1.48918 1.40867 0.98263 0.86189 0.80058 0.82597 0.77313 1.21681 1.21764 1.20806 1.17996 0.87116 0.83196 0.77239 1.90862 1.13219 1.86951 1.48652 1.20925 0.97439 0.93608 0.98125 1.21274 0.92573 0.97380 0.96948 1.20975 1.02202 0.92104 1.00597 1.17607 0.92190 0.82908 0.97011 1.91526 1.77042 1.47221 1.94740 1.18001 0.96132 0.94801 0.97015 1.21849 0.99808 0.98876 0.96903 1.22379 0.91798 0.95291 0.96219 1.67634 1.26917 0.99812 1.23820 1.23542 0.91923 0.97526 0.87953 1.19513 0.97332 0.91835 0.97582 0.92597 0.89714 0.91093 0.89716 0.88573 0.78735 0.96309 0.95475 0.77642 0.93496 0.83486 0.83555 0.83782 0.82274 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 8.79 59.85 0.53 1.08 16 2 N -0.60 -6.36 2.84 -182.86 -0.52 -6.88 16 3 C 0.09 1.01 5.00 -4.04 -0.02 0.99 16 4 C 0.09 1.36 3.30 -26.73 -0.09 1.27 16 5 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 6 O -0.55 -8.67 11.98 -35.23 -0.42 -9.09 16 7 C 0.13 2.48 5.92 -4.04 -0.02 2.46 16 8 N -0.73 -18.79 5.49 -59.91 -0.33 -19.12 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.56 6.99 6.87 -12.53 -0.09 6.91 16 18 O -0.52 -8.35 14.89 5.27 0.08 -8.28 16 19 C -0.10 -1.00 5.02 -102.82 -0.52 -1.52 16 20 C -0.06 -0.45 7.99 -39.13 -0.31 -0.76 16 21 C -0.14 -0.91 9.90 -39.67 -0.39 -1.31 16 22 C 0.12 1.05 7.28 -38.96 -0.28 0.76 16 23 F -0.13 -1.07 16.72 2.25 0.04 -1.03 16 24 C -0.05 -0.54 5.75 -106.80 -0.61 -1.16 16 25 C -0.15 -1.41 9.70 -39.39 -0.38 -1.79 16 26 C 0.09 0.88 11.07 -17.96 -0.20 0.68 16 27 N -0.47 -6.25 10.30 -13.23 -0.14 -6.39 16 28 C 0.16 2.14 10.51 -17.09 -0.18 1.96 16 29 C -0.06 -0.70 5.90 -104.83 -0.62 -1.32 16 30 H 0.06 0.25 6.75 -51.93 -0.35 -0.10 16 31 H 0.08 0.59 7.19 -51.93 -0.37 0.22 16 32 H 0.07 0.52 6.78 -51.93 -0.35 0.17 16 33 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.10 1.22 7.49 -51.93 -0.39 0.83 16 35 H 0.37 4.46 9.03 45.56 0.41 4.87 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.39 10.92 7.54 -40.82 -0.31 10.61 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.15 0.68 6.22 -52.49 -0.33 0.36 16 41 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.96 7.81 -52.48 -0.41 0.55 16 43 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.18 2.57 6.30 -52.49 -0.33 2.24 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -35.94 374.53 -7.89 -43.83 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.51 Total: 11.06 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.44 Total: 0.71 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.26 Total: -60.56 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.34 Total: -17.37 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.94 -7.89 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507500498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.222 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds