Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00081 * 2 1 4 4 C 1.53004 * 109.47194 * 270.27358 * 3 2 1 5 5 H 1.09006 * 109.46862 * 305.00418 * 4 3 2 6 6 O 1.42899 * 109.46810 * 64.99838 * 4 3 2 7 7 C 1.52997 * 109.47127 * 185.00151 * 4 3 2 8 8 N 1.46506 * 109.46790 * 179.97438 * 7 4 3 9 9 C 1.36938 * 119.99454 * 179.97438 * 8 7 4 10 10 H 1.07992 * 120.00317 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99496 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99937 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99978 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46727 * 90.00277 * 13 11 9 15 15 H 1.48500 * 109.47225 * 210.00287 * 13 11 9 16 16 H 1.48501 * 109.46939 * 330.00609 * 13 11 9 17 17 C 1.34774 * 119.99680 * 180.27022 * 2 1 3 18 18 O 1.21608 * 119.99789 * 174.77274 * 17 2 1 19 19 C 1.47397 * 120.00119 * 354.77670 * 17 2 1 20 20 C 1.38955 * 120.65239 * 315.32254 * 19 17 2 21 21 C 1.38736 * 120.73162 * 179.69626 * 20 19 17 22 22 C 1.37500 * 121.67789 * 0.61466 * 21 20 19 23 23 F 1.35103 * 119.85332 * 179.69219 * 22 21 20 24 24 C 1.40589 * 120.29352 * 359.66711 * 22 21 20 25 25 C 1.40588 * 122.24779 * 179.97438 * 24 22 21 26 26 C 1.36312 * 118.65061 * 180.02562 * 25 24 22 27 27 N 1.32493 * 121.87309 * 0.04586 * 26 25 24 28 28 C 1.31359 * 122.68821 * 359.97215 * 27 26 25 29 29 C 1.40013 * 119.85202 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47248 * 264.89857 * 1 2 3 31 31 H 1.09007 * 109.46901 * 24.89160 * 1 2 3 32 32 H 1.08994 * 109.46974 * 144.89054 * 1 2 3 33 33 H 1.09006 * 109.47297 * 30.27387 * 3 2 1 34 34 H 1.08996 * 109.47049 * 150.27641 * 3 2 1 35 35 H 0.96695 * 113.99885 * 60.00792 * 6 4 3 36 36 H 1.08997 * 109.46924 * 299.99974 * 7 4 3 37 37 H 1.08996 * 109.47347 * 60.00104 * 7 4 3 38 38 H 0.96993 * 119.99830 * 0.02562 * 8 7 4 39 39 H 0.97005 * 119.99477 * 180.02562 * 12 11 9 40 40 H 1.08002 * 119.63411 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.16222 * 180.28085 * 21 20 19 42 42 H 1.08004 * 120.67599 * 0.02562 * 25 24 22 43 43 H 1.07995 * 119.06398 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.07211 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4466 1.7138 -1.4425 5 1 2.9561 0.9177 -1.9856 6 8 1.1975 1.9984 -2.0755 7 6 3.3179 2.9714 -1.4449 8 7 3.5569 3.3972 -2.8262 9 6 4.3161 4.5087 -3.0784 10 1 4.7390 5.0710 -2.2591 11 6 4.5420 4.9124 -4.3872 12 7 4.0262 4.2273 -5.3856 13 14 5.5783 6.4281 -4.7313 14 1 7.0029 6.0326 -4.8699 15 1 5.1174 7.0676 -5.9898 16 1 5.4383 7.3889 -3.6077 17 6 2.1389 -1.1672 -0.0055 18 8 3.3512 -1.1690 -0.1015 19 6 1.4064 -2.4416 0.1047 20 6 0.3861 -2.5940 1.0355 21 6 -0.3086 -3.7907 1.1364 22 6 -0.0106 -4.8683 0.3361 23 9 -0.7068 -6.0184 0.4699 24 6 1.0151 -4.7785 -0.6213 25 6 1.3544 -5.8543 -1.4603 26 6 2.3623 -5.6868 -2.3627 27 7 3.0252 -4.5444 -2.4670 28 6 2.7612 -3.4998 -1.7156 29 6 1.7430 -3.5702 -0.7571 30 1 -0.3633 -0.0914 1.0235 31 1 -0.3633 0.9323 -0.4326 32 1 -0.3633 -0.8406 -0.5910 33 1 1.6106 2.0272 0.5181 34 1 3.1521 1.1371 0.5095 35 1 0.6888 2.6989 -1.6446 36 1 2.8085 3.7674 -0.9019 37 1 4.2707 2.7543 -0.9621 38 1 3.1767 2.8924 -3.5620 39 1 4.1844 4.5093 -6.3001 40 1 0.1279 -1.7703 1.6847 41 1 -1.1001 -3.8799 1.8658 42 1 0.8273 -6.7945 -1.3912 43 1 2.6282 -6.5087 -3.0108 44 1 3.3283 -2.5887 -1.8368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507500498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = -75.316654 kcal Electronic energy + Delta-G solvation = -29871.728945 eV Core-core repulsion = 25510.322790 eV Total energy + Delta-G solvation = -4361.406155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.15376 -42.07252 -40.82778 -38.88890 -38.09518 -36.47042 -35.80384 -33.89710 -33.22147 -32.40028 -31.52281 -30.27753 -27.93247 -27.18973 -25.68473 -24.95213 -24.81644 -23.62257 -22.67142 -20.84004 -19.60658 -19.24523 -18.92123 -18.65096 -17.84971 -17.73405 -16.96573 -16.85815 -16.71296 -16.47768 -16.34769 -16.16787 -16.03124 -15.48620 -15.20578 -15.14499 -15.02508 -14.71621 -14.64769 -14.12635 -14.05157 -13.74602 -13.60981 -13.44813 -13.28648 -12.98927 -12.87830 -12.76327 -12.58850 -12.53451 -12.18545 -12.02734 -11.82369 -11.34534 -11.23452 -10.99260 -10.96754 -10.67350 -10.39927 -9.62676 -9.14334 -9.02093 -7.95048 -5.25261 -1.12866 -0.37320 0.35285 1.38178 1.45844 1.48993 1.57114 1.71530 2.01799 2.55170 2.76028 2.79581 3.20498 3.27528 3.36367 3.41855 3.47910 3.49081 3.61398 3.72977 3.76085 4.02626 4.17336 4.20663 4.27347 4.30941 4.45423 4.47322 4.53885 4.55632 4.63879 4.68641 4.75846 4.84981 4.87765 4.92641 4.95620 5.02439 5.21816 5.39566 5.44117 5.47466 5.53834 6.23806 6.25592 6.79665 6.91600 6.97717 7.31774 8.08395 8.30751 9.28508 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002341 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.074416 B =11958.893208 C =12971.488511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.593 5.593 3 C 0.098 3.902 4 C 0.102 3.898 5 H 0.060 0.940 6 O -0.562 6.562 7 C 0.123 3.877 8 N -0.743 5.743 9 C -0.247 4.247 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.264 1.264 17 C 0.552 3.448 18 O -0.571 6.571 19 C -0.123 4.123 20 C -0.034 4.034 21 C -0.122 4.122 22 C 0.121 3.879 23 F -0.124 7.124 24 C -0.069 4.069 25 C -0.141 4.141 26 C 0.069 3.931 27 N -0.504 5.504 28 C 0.129 3.871 29 C -0.070 4.070 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.385 0.615 36 H 0.044 0.956 37 H 0.023 0.977 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.183 0.817 41 H 0.188 0.812 42 H 0.174 0.826 43 H 0.186 0.814 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 -19.702 19.736 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.323 5.323 3 C -0.026 4.026 4 C 0.041 3.959 5 H 0.078 0.922 6 O -0.369 6.369 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.806 3.194 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.189 1.189 17 C 0.341 3.659 18 O -0.451 6.451 19 C -0.128 4.128 20 C -0.052 4.052 21 C -0.142 4.142 22 C 0.101 3.899 23 F -0.102 7.102 24 C -0.075 4.075 25 C -0.160 4.160 26 C -0.076 4.076 27 N -0.212 5.212 28 C -0.040 4.040 29 C -0.073 4.073 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.200 0.800 41 H 0.205 0.795 42 H 0.191 0.809 43 H 0.203 0.797 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.129 -20.124 18.700 31.362 hybrid contribution 0.123 0.725 -0.264 0.782 sum -15.007 -19.399 18.436 30.682 Atomic orbital electron populations 1.22325 0.76474 1.04854 1.03760 1.47709 1.08786 1.04484 1.71321 1.22138 0.99244 0.85590 0.95582 1.22208 0.84531 0.95329 0.93816 0.92161 1.86605 1.31863 1.59945 1.58471 1.21444 0.97166 0.95045 0.86744 1.42481 1.61530 1.31635 1.02895 1.19680 1.23040 1.02944 0.92176 0.90283 1.25670 1.03109 1.02858 0.95562 1.69866 1.51028 1.42927 0.98369 0.85082 0.77934 0.79111 0.77271 1.21640 1.22131 1.18874 1.18417 0.86703 0.84403 0.76373 1.90831 1.15558 1.87709 1.50993 1.20790 0.99442 0.92383 1.00162 1.21675 0.90066 0.98499 0.94978 1.21402 1.02123 0.90639 1.00021 1.17692 0.91715 0.83648 0.96850 1.91540 1.76792 1.47193 1.94667 1.18225 0.96829 0.94433 0.98032 1.22200 0.98775 0.99595 0.95432 1.22816 0.92327 0.94961 0.97448 1.67523 1.28272 1.00847 1.24553 1.23194 0.93586 0.97114 0.90060 1.19528 0.97124 0.93142 0.97530 0.88497 0.89168 0.91258 0.85549 0.89704 0.76640 0.93798 0.95901 0.79501 0.94067 0.80022 0.79501 0.80882 0.79697 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.79 127.77 1.12 1.87 16 2 N -0.59 -11.90 2.84 -850.69 -2.41 -14.32 16 3 C 0.10 2.18 5.00 86.38 0.43 2.62 16 4 C 0.10 3.31 3.30 30.59 0.10 3.41 16 5 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 6 O -0.56 -17.55 11.98 -148.98 -1.78 -19.33 16 7 C 0.12 4.85 5.92 86.38 0.51 5.36 16 8 N -0.74 -39.41 5.49 -343.45 -1.89 -41.30 16 9 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 10 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 11 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 12 N -0.97 -62.22 13.06 21.65 0.28 -61.93 16 13 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 15 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 C 0.55 14.19 6.87 86.66 0.60 14.79 16 18 O -0.57 -19.94 14.89 -4.05 -0.06 -20.00 16 19 C -0.12 -2.50 5.02 -18.70 -0.09 -2.59 16 20 C -0.03 -0.36 7.99 22.56 0.18 -0.18 16 21 C -0.12 -1.05 9.90 22.21 0.22 -0.83 16 22 C 0.12 1.70 7.28 22.67 0.17 1.86 16 23 F -0.12 -1.66 16.72 44.97 0.75 -0.91 16 24 C -0.07 -1.34 5.75 -21.27 -0.12 -1.47 16 25 C -0.14 -2.45 9.70 22.39 0.22 -2.23 16 26 C 0.07 1.43 11.07 84.14 0.93 2.36 16 27 N -0.50 -14.57 10.30 -195.77 -2.02 -16.59 16 28 C 0.13 3.88 10.51 85.19 0.90 4.78 16 29 C -0.07 -1.71 5.90 -20.00 -0.12 -1.83 16 30 H 0.10 0.32 6.75 -2.39 -0.02 0.31 16 31 H 0.09 0.95 7.19 -2.38 -0.02 0.93 16 32 H 0.07 0.83 6.78 -2.39 -0.02 0.82 16 33 H 0.13 1.79 8.07 -2.38 -0.02 1.77 16 34 H 0.08 2.14 7.49 -2.39 -0.02 2.12 16 35 H 0.38 8.63 9.03 -74.06 -0.67 7.96 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.37 21.85 7.54 -92.71 -0.70 21.15 16 39 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 40 H 0.18 0.63 6.22 -2.91 -0.02 0.62 16 41 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.17 1.88 7.81 -2.91 -0.02 1.86 16 43 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.15 5.14 6.30 -2.91 -0.02 5.12 16 Total: -1.00 -84.34 374.53 0.95 -83.39 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.29 Total: 31.37 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.34 Total: 10.28 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -6.04 Total: -134.14 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.85 Total: -39.33 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.75 Total: -0.91 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -84.34 0.95 -83.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507500498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -84.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds