Wall clock time and date at job start Wed Apr 1 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46594 * 300.00070 * 3 2 1 6 6 H 1.48498 * 109.47148 * 59.99958 * 3 2 1 7 7 C 1.38817 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00063 * 163.61548 * 7 2 1 9 9 N 1.36936 * 119.99639 * 343.61264 * 7 2 1 10 10 C 1.47170 * 121.05541 * 153.88385 * 9 7 2 11 11 C 1.53279 * 108.52835 * 128.83725 * 10 9 7 12 12 O 1.43094 * 109.22568 * 52.93351 * 11 10 9 13 13 C 1.42071 * 114.33719 * 298.82784 * 12 11 10 14 14 C 1.54513 * 110.34648 * 297.97816 * 13 12 11 15 15 C 1.55021 * 101.55961 * 276.03060 * 14 13 12 16 16 N 1.47524 * 104.88386 * 323.68339 * 15 14 13 17 17 C 1.34781 * 125.64788 * 203.96839 * 16 15 14 18 18 O 1.21350 * 120.00198 * 179.97438 * 17 16 15 19 19 C 1.49446 * 119.99490 * 359.97438 * 17 16 15 20 20 O 1.21341 * 120.00439 * 0.02562 * 19 17 16 21 21 N 1.34781 * 119.99490 * 179.97438 * 19 17 16 22 22 C 1.46506 * 119.99677 * 179.97438 * 21 19 17 23 23 C 1.52999 * 109.46671 * 180.02562 * 22 21 19 24 24 F 1.39898 * 109.47643 * 299.99833 * 23 22 21 25 25 F 1.39899 * 109.47262 * 60.00451 * 23 22 21 26 26 C 1.47187 * 108.69090 * 23.96540 * 16 15 14 27 27 C 1.47293 * 121.06454 * 333.86142 * 9 7 2 28 28 H 0.97005 * 120.00089 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.62481 * 248.54629 * 10 9 7 30 30 H 1.08996 * 109.63045 * 8.92711 * 10 9 7 31 31 H 1.09000 * 109.51473 * 172.85621 * 11 10 9 32 32 H 1.09003 * 109.51137 * 293.00359 * 11 10 9 33 33 H 1.08994 * 111.01150 * 34.11155 * 14 13 12 34 34 H 1.08999 * 111.01465 * 157.95385 * 14 13 12 35 35 H 1.09003 * 110.35462 * 82.50890 * 15 14 13 36 36 H 1.09005 * 110.35113 * 204.79374 * 15 14 13 37 37 H 0.97003 * 120.00321 * 0.02562 * 21 19 17 38 38 H 1.08999 * 109.46888 * 299.99847 * 22 21 19 39 39 H 1.08994 * 109.46976 * 60.00558 * 22 21 19 40 40 H 1.09002 * 109.47058 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.91072 * 239.14435 * 26 16 15 42 42 H 1.09003 * 110.06496 * 117.97143 * 26 16 15 43 43 H 1.08998 * 109.67568 * 109.65793 * 27 9 7 44 44 H 1.08996 * 109.70725 * 349.13279 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0573 -1.2213 -0.2633 9 7 1.3672 -2.3638 0.3356 10 6 1.8355 -3.6640 -0.1704 11 6 1.9873 -4.6224 1.0161 12 8 0.7657 -4.6477 1.7608 13 6 0.3889 -3.3929 2.3103 14 6 1.4567 -2.9036 3.3142 15 6 1.0303 -3.6449 4.6072 16 7 -0.4443 -3.6590 4.5671 17 6 -1.2581 -3.7720 5.6356 18 8 -2.4621 -3.7716 5.4841 19 6 -0.6775 -3.8977 7.0069 20 8 0.5264 -3.8976 7.1585 21 7 -1.4912 -4.0101 8.0755 22 6 -0.9221 -4.1339 9.4198 23 6 -2.0532 -4.2462 10.4440 24 9 -2.8551 -3.1016 10.3807 25 9 -2.8289 -5.3753 10.1602 26 6 -0.8794 -3.5293 3.1670 27 6 0.1851 -2.3519 1.2144 28 1 -0.4850 0.8401 0.0004 29 1 1.1076 -4.0663 -0.8751 30 1 2.7967 -3.5384 -0.6686 31 1 2.2106 -5.6241 0.6489 32 1 2.7986 -4.2804 1.6589 33 1 2.4556 -3.2069 3.0010 34 1 1.4022 -1.8231 3.4471 35 1 1.4191 -4.6633 4.6060 36 1 1.3813 -3.1052 5.4868 37 1 -2.4537 -4.0098 7.9544 38 1 -0.2978 -5.0260 9.4692 39 1 -0.3174 -3.2544 9.6407 40 1 -1.6298 -4.3378 11.4442 41 1 -1.5019 -2.6419 3.0525 42 1 -1.4377 -4.4155 2.8653 43 1 -0.7050 -2.5980 0.6354 44 1 0.0702 -1.3650 1.6625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570884951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:37 Heat of formation + Delta-G solvation = -169.461688 kcal Electronic energy + Delta-G solvation = -31661.604447 eV Core-core repulsion = 26865.346633 eV Total energy + Delta-G solvation = -4796.257815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.49434 -47.48440 -40.88284 -39.61522 -38.28866 -36.45455 -35.30111 -34.49411 -31.57806 -31.25550 -30.28846 -29.56674 -27.63615 -26.36478 -24.66959 -23.62937 -22.97813 -22.10662 -21.34270 -20.22780 -18.97605 -18.07750 -18.03178 -17.91057 -17.19071 -16.84376 -16.55026 -16.25396 -15.74071 -15.60970 -15.14702 -14.81653 -14.56484 -14.40240 -14.34064 -14.23479 -13.84117 -13.71438 -13.49061 -13.26569 -12.98684 -12.96807 -12.85507 -12.73181 -12.35418 -12.18080 -11.70353 -11.55742 -11.31821 -11.13963 -10.98191 -10.89483 -10.70267 -10.29616 -10.28572 -10.00205 -9.74546 -9.63693 -9.51562 -9.09810 -8.64268 -8.57398 -6.79160 -5.88573 -3.31667 1.32934 2.05200 3.11113 3.12835 3.29103 3.31797 3.39754 3.41264 3.61818 3.99304 4.12347 4.18879 4.27426 4.39460 4.90357 4.91694 4.92925 4.95730 5.28830 5.38074 5.42697 5.58995 5.65349 5.76716 5.80565 5.87184 5.93271 6.03596 6.07321 6.20683 6.32050 6.35533 6.50413 6.59207 6.72984 6.75769 7.01506 7.32095 7.39818 7.50293 7.68123 7.86327 7.91294 8.27959 9.06385 9.69444 10.26666 11.19849 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002577 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.766787 B =10864.494433 C =11635.440634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.252 4.252 8 H 0.070 0.930 9 N -0.592 5.592 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.377 6.377 13 C 0.085 3.915 14 C -0.147 4.147 15 C 0.099 3.901 16 N -0.578 5.578 17 C 0.517 3.483 18 O -0.526 6.526 19 C 0.518 3.482 20 O -0.510 6.510 21 N -0.705 5.705 22 C 0.069 3.931 23 C 0.255 3.745 24 F -0.199 7.199 25 F -0.199 7.199 26 C 0.123 3.877 27 C 0.164 3.836 28 H 0.255 0.745 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.418 0.582 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.030 0.970 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -9.641 19.079 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.316 5.316 10 C -0.018 4.018 11 C -0.031 4.031 12 O -0.296 6.296 13 C 0.043 3.957 14 C -0.185 4.185 15 C -0.023 4.023 16 N -0.311 5.311 17 C 0.299 3.701 18 O -0.403 6.403 19 C 0.300 3.700 20 O -0.384 6.384 21 N -0.361 5.361 22 C -0.056 4.056 23 C 0.201 3.799 24 F -0.180 7.180 25 F -0.181 7.181 26 C 0.001 3.999 27 C 0.038 3.962 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.256 0.744 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.341 -9.653 19.156 21.454 hybrid contribution 0.026 1.053 -0.170 1.067 sum -0.315 -8.600 18.986 20.846 Atomic orbital electron populations 1.70012 1.05225 1.25639 1.53795 1.25046 0.95344 0.98443 1.00757 0.86216 0.79314 0.83826 0.77387 1.20217 1.21649 1.21469 1.19202 0.92446 0.84281 1.42225 0.91271 1.44066 1.32829 1.01368 1.53330 1.21601 0.98715 0.87560 0.93894 1.23112 0.86310 0.99784 0.93941 1.87663 1.41679 1.30250 1.70032 1.22665 0.92270 0.86606 0.94178 1.23258 1.00470 1.01309 0.93443 1.22759 0.77951 1.01500 1.00094 1.48412 1.08514 1.67883 1.06311 1.19442 0.86246 0.79695 0.84695 1.90776 1.13751 1.50135 1.85677 1.20166 0.86661 0.77274 0.85945 1.90738 1.14054 1.47503 1.86114 1.45485 1.11662 1.73899 1.05079 1.22616 0.95458 1.06230 0.81251 1.22234 0.84514 0.71816 1.01358 1.93045 1.76320 1.50905 1.97742 1.93040 1.77709 1.51970 1.95346 1.21968 0.96662 1.03399 0.77826 1.21197 0.89449 0.96624 0.88974 0.93469 0.95535 0.91839 0.89857 0.93284 0.89114 0.89449 0.90995 0.88664 0.74442 0.87728 0.87678 0.85263 0.88980 0.89974 0.95156 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 11.13 55.49 0.62 -24.60 16 2 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 3 Si 0.90 20.95 29.58 -169.99 -5.03 15.93 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.56 9.66 -15.06 -0.15 -6.70 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.08 2.95 -172.18 -0.51 -14.59 16 10 C 0.11 2.17 6.72 -3.53 -0.02 2.15 16 11 C 0.05 0.78 6.76 37.30 0.25 1.04 16 12 O -0.38 -7.01 10.22 -35.23 -0.36 -7.37 16 13 C 0.08 1.58 0.83 -89.73 -0.07 1.50 16 14 C -0.15 -2.49 5.91 -24.87 -0.15 -2.64 16 15 C 0.10 1.50 6.06 -2.41 -0.01 1.48 16 16 N -0.58 -9.38 3.33 -171.15 -0.57 -9.95 16 17 C 0.52 8.13 7.92 -11.58 -0.09 8.04 16 18 O -0.53 -9.20 16.81 5.50 0.09 -9.11 16 19 C 0.52 6.85 7.86 -11.58 -0.09 6.76 16 20 O -0.51 -7.25 13.78 5.50 0.08 -7.18 16 21 N -0.71 -7.17 5.41 -60.73 -0.33 -7.49 16 22 C 0.07 0.44 5.91 -4.04 -0.02 0.42 16 23 C 0.25 1.31 5.42 37.16 0.20 1.51 16 24 F -0.20 -1.57 17.20 2.25 0.04 -1.53 16 25 F -0.20 -1.54 17.20 2.25 0.04 -1.50 16 26 C 0.12 2.15 6.24 -3.32 -0.02 2.13 16 27 C 0.16 3.73 3.94 -3.85 -0.02 3.71 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.80 6.14 -51.93 -0.32 0.48 16 33 H 0.09 1.52 5.98 -51.93 -0.31 1.21 16 34 H 0.09 1.59 7.86 -51.93 -0.41 1.18 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.10 1.41 6.17 -51.93 -0.32 1.09 16 37 H 0.42 4.27 7.83 -40.82 -0.32 3.95 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.09 1.65 7.79 -51.93 -0.40 1.24 16 42 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 2.46 5.98 -51.93 -0.31 2.15 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -31.78 364.07 -6.46 -38.24 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.73 Total: 4.28 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: -0.28 Total: 19.39 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.79 Total: -56.63 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.19 Total: -23.66 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.78 -6.46 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570884951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.219 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds