Wall clock time and date at job start Wed Apr 1 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00221 * 2 1 4 4 H 1.48495 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46594 * 300.00070 * 3 2 1 6 6 H 1.48498 * 109.47148 * 59.99958 * 3 2 1 7 7 C 1.38817 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00063 * 163.61548 * 7 2 1 9 9 N 1.36936 * 119.99639 * 343.61264 * 7 2 1 10 10 C 1.47170 * 121.05541 * 153.88385 * 9 7 2 11 11 C 1.53279 * 108.52835 * 128.83725 * 10 9 7 12 12 O 1.43094 * 109.22568 * 52.93351 * 11 10 9 13 13 C 1.42071 * 114.33719 * 298.82784 * 12 11 10 14 14 C 1.54513 * 110.34648 * 297.97816 * 13 12 11 15 15 C 1.55021 * 101.55961 * 276.03060 * 14 13 12 16 16 N 1.47524 * 104.88386 * 323.68339 * 15 14 13 17 17 C 1.34781 * 125.64788 * 203.96839 * 16 15 14 18 18 O 1.21350 * 120.00198 * 179.97438 * 17 16 15 19 19 C 1.49446 * 119.99490 * 359.97438 * 17 16 15 20 20 O 1.21341 * 120.00439 * 0.02562 * 19 17 16 21 21 N 1.34781 * 119.99490 * 179.97438 * 19 17 16 22 22 C 1.46506 * 119.99677 * 179.97438 * 21 19 17 23 23 C 1.52999 * 109.46671 * 180.02562 * 22 21 19 24 24 F 1.39898 * 109.47643 * 299.99833 * 23 22 21 25 25 F 1.39899 * 109.47262 * 60.00451 * 23 22 21 26 26 C 1.47187 * 108.69090 * 23.96540 * 16 15 14 27 27 C 1.47293 * 121.06454 * 333.86142 * 9 7 2 28 28 H 0.97005 * 120.00089 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.62481 * 248.54629 * 10 9 7 30 30 H 1.08996 * 109.63045 * 8.92711 * 10 9 7 31 31 H 1.09000 * 109.51473 * 172.85621 * 11 10 9 32 32 H 1.09003 * 109.51137 * 293.00359 * 11 10 9 33 33 H 1.08994 * 111.01150 * 34.11155 * 14 13 12 34 34 H 1.08999 * 111.01465 * 157.95385 * 14 13 12 35 35 H 1.09003 * 110.35462 * 82.50890 * 15 14 13 36 36 H 1.09005 * 110.35113 * 204.79374 * 15 14 13 37 37 H 0.97003 * 120.00321 * 0.02562 * 21 19 17 38 38 H 1.08999 * 109.46888 * 299.99847 * 22 21 19 39 39 H 1.08994 * 109.46976 * 60.00558 * 22 21 19 40 40 H 1.09002 * 109.47058 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.91072 * 239.14435 * 26 16 15 42 42 H 1.09003 * 110.06496 * 117.97143 * 26 16 15 43 43 H 1.08998 * 109.67568 * 109.65793 * 27 9 7 44 44 H 1.08996 * 109.70725 * 349.13279 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0573 -1.2213 -0.2633 9 7 1.3672 -2.3638 0.3356 10 6 1.8355 -3.6640 -0.1704 11 6 1.9873 -4.6224 1.0161 12 8 0.7657 -4.6477 1.7608 13 6 0.3889 -3.3929 2.3103 14 6 1.4567 -2.9036 3.3142 15 6 1.0303 -3.6449 4.6072 16 7 -0.4443 -3.6590 4.5671 17 6 -1.2581 -3.7720 5.6356 18 8 -2.4621 -3.7716 5.4841 19 6 -0.6775 -3.8977 7.0069 20 8 0.5264 -3.8976 7.1585 21 7 -1.4912 -4.0101 8.0755 22 6 -0.9221 -4.1339 9.4198 23 6 -2.0532 -4.2462 10.4440 24 9 -2.8551 -3.1016 10.3807 25 9 -2.8289 -5.3753 10.1602 26 6 -0.8794 -3.5293 3.1670 27 6 0.1851 -2.3519 1.2144 28 1 -0.4850 0.8401 0.0004 29 1 1.1076 -4.0663 -0.8751 30 1 2.7967 -3.5384 -0.6686 31 1 2.2106 -5.6241 0.6489 32 1 2.7986 -4.2804 1.6589 33 1 2.4556 -3.2069 3.0010 34 1 1.4022 -1.8231 3.4471 35 1 1.4191 -4.6633 4.6060 36 1 1.3813 -3.1052 5.4868 37 1 -2.4537 -4.0098 7.9544 38 1 -0.2978 -5.0260 9.4692 39 1 -0.3174 -3.2544 9.6407 40 1 -1.6298 -4.3378 11.4442 41 1 -1.5019 -2.6419 3.0525 42 1 -1.4377 -4.4155 2.8653 43 1 -0.7050 -2.5980 0.6354 44 1 0.0702 -1.3650 1.6625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570884951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:36 Heat of formation + Delta-G solvation = -192.739560 kcal Electronic energy + Delta-G solvation = -31662.613851 eV Core-core repulsion = 26865.346633 eV Total energy + Delta-G solvation = -4797.267219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98032 -47.99032 -42.09663 -40.95311 -39.53221 -37.81285 -36.34584 -36.11654 -33.26736 -32.92647 -30.97163 -30.93504 -29.21372 -27.95244 -25.91477 -25.12970 -24.06092 -23.30369 -22.72786 -21.31325 -20.49722 -19.19256 -18.99022 -18.65782 -18.40670 -17.93696 -17.68606 -17.23494 -17.15598 -16.64316 -16.58962 -16.16346 -15.90673 -15.74854 -15.44089 -15.24861 -15.16203 -14.91345 -14.57122 -14.38397 -14.34417 -14.27881 -13.99429 -13.67671 -13.63433 -13.45645 -13.12428 -12.88271 -12.75034 -12.64866 -12.49228 -12.37492 -12.12671 -12.10769 -11.84724 -11.82165 -11.17247 -10.79854 -10.73590 -10.55443 -10.47659 -9.95276 -8.72484 -7.89558 -5.35561 0.19944 1.01955 1.46019 1.48888 1.58367 1.98315 2.24146 2.48072 2.68502 2.71681 3.12000 3.24033 3.29654 3.40724 3.53641 3.56308 3.83625 3.88479 3.93636 4.21484 4.28915 4.36774 4.45262 4.47252 4.49039 4.50334 4.62322 4.70289 4.75245 4.82559 4.92322 4.98767 5.04113 5.09246 5.12630 5.26527 5.50440 5.62949 5.75669 6.11183 6.29479 6.37411 6.43727 6.74756 7.07051 7.75937 8.30356 9.16835 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002577 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.766787 B =10864.494433 C =11635.440634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.255 4.255 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.102 3.898 11 C 0.052 3.948 12 O -0.381 6.381 13 C 0.094 3.906 14 C -0.139 4.139 15 C 0.112 3.888 16 N -0.582 5.582 17 C 0.512 3.488 18 O -0.549 6.549 19 C 0.524 3.476 20 O -0.520 6.520 21 N -0.696 5.696 22 C 0.062 3.938 23 C 0.254 3.746 24 F -0.216 7.216 25 F -0.215 7.215 26 C 0.128 3.872 27 C 0.175 3.825 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.418 0.582 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.181 0.819 41 H 0.078 0.922 42 H 0.082 0.918 43 H -0.004 1.004 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -10.836 21.231 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.025 4.025 12 O -0.300 6.300 13 C 0.053 3.947 14 C -0.177 4.177 15 C -0.009 4.009 16 N -0.315 5.315 17 C 0.295 3.705 18 O -0.428 6.428 19 C 0.304 3.696 20 O -0.396 6.396 21 N -0.351 5.351 22 C -0.061 4.061 23 C 0.201 3.799 24 F -0.198 7.198 25 F -0.197 7.197 26 C 0.005 3.995 27 C 0.049 3.951 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.254 0.746 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.198 0.802 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.014 0.986 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.541 -10.883 21.341 24.005 hybrid contribution -0.583 1.374 -0.881 1.733 sum 0.958 -9.509 20.460 22.582 Atomic orbital electron populations 1.70174 1.06676 1.25812 1.55620 1.25774 0.95996 1.01438 1.01341 0.85238 0.78850 0.79972 0.76593 1.18674 1.22341 1.21843 1.19537 0.92809 0.85209 1.40893 0.90678 1.44325 1.32723 1.02327 1.53921 1.21811 0.98717 0.86467 0.95289 1.23207 0.85900 1.00885 0.92528 1.87672 1.42660 1.29552 1.70133 1.22310 0.93588 0.85684 0.93151 1.23152 1.00219 1.00516 0.93856 1.22716 0.77117 1.01939 0.99149 1.48450 1.09114 1.68133 1.05831 1.20048 0.85977 0.78732 0.85716 1.90758 1.14819 1.50996 1.86234 1.19599 0.86622 0.77993 0.85351 1.90729 1.14158 1.48714 1.85982 1.45563 1.11443 1.72113 1.05940 1.22995 0.96282 1.07596 0.79187 1.22738 0.83456 0.70488 1.03213 1.93012 1.76922 1.51964 1.97886 1.93010 1.78235 1.52832 1.95603 1.21751 0.95994 1.02789 0.78951 1.20903 0.88179 0.96495 0.89544 0.94120 0.96672 0.90633 0.86148 0.92031 0.88288 0.91086 0.89738 0.87756 0.74551 0.86157 0.86373 0.80207 0.90353 0.90006 0.98564 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.32 11.13 21.65 0.24 -54.08 16 2 C -0.05 -2.71 4.96 84.86 0.42 -2.29 16 3 Si 0.97 43.62 29.58 68.60 2.03 45.65 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.25 -13.30 9.66 84.03 0.81 -12.49 16 8 H 0.08 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -29.25 2.95 -698.65 -2.06 -31.31 16 10 C 0.10 4.00 6.72 86.34 0.58 4.58 16 11 C 0.05 1.63 6.76 72.08 0.49 2.11 16 12 O -0.38 -13.65 10.22 -148.98 -1.52 -15.17 16 13 C 0.09 3.54 0.83 -10.22 -0.01 3.53 16 14 C -0.14 -4.62 5.91 31.80 0.19 -4.43 16 15 C 0.11 3.22 6.06 86.88 0.53 3.75 16 16 N -0.58 -18.62 3.33 -813.76 -2.71 -21.34 16 17 C 0.51 15.86 7.92 87.27 0.69 16.55 16 18 O -0.55 -19.34 16.81 -3.25 -0.05 -19.40 16 19 C 0.52 13.08 7.86 87.27 0.69 13.76 16 20 O -0.52 -13.65 13.78 -3.22 -0.04 -13.70 16 21 N -0.70 -13.00 5.41 -464.41 -2.51 -15.51 16 22 C 0.06 0.63 5.91 86.38 0.51 1.14 16 23 C 0.25 1.92 5.42 71.98 0.39 2.31 16 24 F -0.22 -3.03 17.20 44.97 0.77 -2.25 16 25 F -0.22 -2.90 17.20 44.97 0.77 -2.13 16 26 C 0.13 4.55 6.24 86.47 0.54 5.09 16 27 C 0.18 8.29 3.94 86.07 0.34 8.62 16 28 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 29 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 2.73 7.96 -2.39 -0.02 2.71 16 31 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.06 1.82 6.14 -2.39 -0.01 1.80 16 33 H 0.10 3.11 5.98 -2.39 -0.01 3.10 16 34 H 0.07 2.59 7.86 -2.39 -0.02 2.58 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.10 2.87 6.17 -2.38 -0.01 2.86 16 37 H 0.42 8.11 7.83 -92.71 -0.73 7.38 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.08 2.97 7.79 -2.39 -0.02 2.95 16 42 H 0.08 2.90 8.06 -2.39 -0.02 2.88 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.07 3.65 5.98 -2.39 -0.01 3.63 16 Total: -1.00 -70.26 364.07 1.40 -68.86 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.33 Total: 18.15 kcal Atomic # 6 Polarization: 36.08 SS G_CDS: 6.16 Total: 42.24 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -7.04 Total: -122.25 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.62 Total: -48.27 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 1.55 Total: -4.38 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.26 1.40 -68.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570884951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.883 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds