Wall clock time and date at job start Wed Apr 1 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00042 * 2 1 4 4 C 1.52993 * 109.47252 * 270.00372 * 3 2 1 5 5 H 1.09003 * 109.47235 * 304.99460 * 4 3 2 6 6 O 1.42904 * 109.47645 * 65.00153 * 4 3 2 7 7 C 1.53002 * 109.47134 * 185.00299 * 4 3 2 8 8 N 1.46505 * 109.47413 * 179.97438 * 7 4 3 9 9 C 1.36934 * 120.00265 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99796 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00165 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00200 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00308 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46879 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47002 * 119.99779 * 13 11 9 16 16 H 1.48500 * 109.47336 * 240.00286 * 13 11 9 17 17 C 1.34772 * 119.99970 * 180.02562 * 2 1 3 18 18 O 1.21564 * 120.00030 * 185.15855 * 17 2 1 19 19 C 1.47787 * 119.99848 * 4.88033 * 17 2 1 20 20 C 1.40608 * 119.78811 * 140.00483 * 19 17 2 21 21 C 1.35912 * 120.89104 * 179.77446 * 20 19 17 22 22 F 1.35099 * 119.96903 * 180.25991 * 21 20 19 23 23 C 1.40960 * 120.06159 * 0.47585 * 21 20 19 24 24 N 1.33620 * 120.83552 * 179.80472 * 23 21 20 25 25 C 1.31110 * 121.39535 * 180.02562 * 24 23 21 26 26 C 1.39322 * 121.76733 * 359.95364 * 25 24 23 27 27 C 1.36571 * 119.89950 * 0.02615 * 26 25 24 28 28 C 1.40899 * 118.15713 * 359.97438 * 27 26 25 29 29 C 1.38531 * 119.79096 * 320.28048 * 19 17 2 30 30 H 1.09000 * 109.47291 * 265.95601 * 1 2 3 31 31 H 1.09010 * 109.47149 * 25.95468 * 1 2 3 32 32 H 1.08993 * 109.47296 * 145.95414 * 1 2 3 33 33 H 1.09004 * 109.47008 * 30.00143 * 3 2 1 34 34 H 1.09003 * 109.46619 * 150.00034 * 3 2 1 35 35 H 0.96693 * 113.99828 * 59.99615 * 6 4 3 36 36 H 1.09001 * 109.47052 * 300.00006 * 7 4 3 37 37 H 1.08998 * 109.47054 * 59.99669 * 7 4 3 38 38 H 0.97001 * 119.99616 * 0.02562 * 8 7 4 39 39 H 0.96994 * 120.00609 * 180.02562 * 12 11 9 40 40 H 1.08009 * 119.55076 * 0.02562 * 20 19 17 41 41 H 1.08010 * 119.12082 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.05494 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.92331 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.27072 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 2.9642 0.9132 -1.9815 6 8 1.2060 1.9937 -2.0814 7 6 3.3238 2.9681 -1.4442 8 7 3.5685 3.3908 -2.8255 9 6 4.3287 4.5016 -3.0772 10 1 4.7483 5.0658 -2.2574 11 6 4.5609 4.9017 -4.3858 12 7 4.0500 4.2138 -5.3849 13 14 5.5986 6.4166 -4.7293 14 1 6.0527 7.0071 -3.4446 15 1 6.7806 6.0330 -5.5423 16 1 4.7880 7.4135 -5.4738 17 6 2.1388 -1.1672 -0.0005 18 8 3.3508 -1.1693 0.0941 19 6 1.4039 -2.4446 -0.1100 20 6 1.9224 -3.4831 -0.9036 21 6 1.2675 -4.6686 -1.0165 22 9 1.7853 -5.6556 -1.7800 23 6 0.0462 -4.8677 -0.3414 24 7 -0.6126 -6.0257 -0.4447 25 6 -1.7495 -6.2225 0.1780 26 6 -2.3277 -5.2391 0.9776 27 6 -1.7073 -4.0317 1.1274 28 6 -0.4857 -3.8241 0.4566 29 6 0.2056 -2.6094 0.5654 30 1 -0.3634 -0.0725 1.0251 31 1 -0.3634 0.9241 -0.4498 32 1 -0.3633 -0.8514 -0.5753 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1383 0.5139 35 1 0.6955 2.6950 -1.6542 36 1 2.8122 3.7654 -0.9051 37 1 4.2746 2.7521 -0.9569 38 1 3.1913 2.8842 -3.5617 39 1 4.2126 4.4932 -6.2994 40 1 2.8558 -3.3380 -1.4273 41 1 -2.2511 -7.1728 0.0684 42 1 -3.2655 -5.4308 1.4777 43 1 -2.1409 -3.2574 1.7429 44 1 -0.1929 -1.8084 1.1704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571592383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:44 Heat of formation + Delta-G solvation = -44.111074 kcal Electronic energy + Delta-G solvation = -29514.812495 eV Core-core repulsion = 25154.759516 eV Total energy + Delta-G solvation = -4360.052979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.14738 -41.40790 -40.17473 -37.76430 -36.96040 -35.44498 -34.02466 -33.82228 -31.63684 -31.22338 -30.61986 -29.18768 -27.13993 -26.03010 -24.87080 -24.32908 -22.77545 -22.59715 -21.26397 -20.42887 -18.96989 -18.03233 -17.82483 -17.16265 -16.78888 -16.46420 -16.45640 -16.08311 -15.64133 -15.46065 -15.24197 -15.18255 -14.68175 -14.44525 -14.38432 -13.85870 -13.77717 -13.61812 -13.46687 -13.21818 -12.96226 -12.91393 -12.52702 -12.30127 -12.22859 -12.02399 -11.84500 -11.54741 -10.95138 -10.93784 -10.83348 -10.73287 -10.26972 -10.12737 -10.07261 -9.83213 -9.69769 -9.40954 -8.89426 -8.65380 -8.59679 -6.91211 -5.73861 -3.03545 -0.31509 0.09742 1.31509 1.96678 2.54848 2.87358 3.44367 3.47174 3.48483 3.49467 3.52144 3.74644 3.98004 4.09080 4.26551 4.30849 4.47189 4.54977 4.68820 4.73645 4.77180 4.88578 4.92670 4.99819 5.08807 5.16054 5.23889 5.40266 5.43067 5.49362 5.53162 5.56515 5.63071 5.68123 5.72824 5.90204 5.95226 6.18585 6.23991 6.34209 6.52933 6.71675 7.08673 7.29966 7.70107 7.88800 7.98685 8.44182 9.55690 10.13405 10.49077 11.48546 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002071 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.181539 B =13515.819300 C =14042.868938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.556 3.444 18 O -0.522 6.522 19 C -0.090 4.090 20 C -0.095 4.095 21 C 0.126 3.874 22 F -0.118 7.118 23 C 0.110 3.890 24 N -0.467 5.467 25 C 0.138 3.862 26 C -0.169 4.169 27 C -0.050 4.050 28 C -0.087 4.087 29 C -0.076 4.076 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.367 0.633 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 -18.910 18.162 31.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.344 3.656 18 O -0.398 6.398 19 C -0.093 4.093 20 C -0.116 4.116 21 C 0.106 3.894 22 F -0.096 7.096 23 C -0.013 4.013 24 N -0.174 5.174 25 C -0.034 4.034 26 C -0.189 4.189 27 C -0.076 4.076 28 C -0.089 4.089 29 C -0.095 4.095 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.213 0.787 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.172 0.828 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.400 -19.868 17.246 31.002 hybrid contribution -0.061 1.567 0.229 1.585 sum -16.460 -18.302 17.476 30.188 Atomic orbital electron populations 1.22196 0.79377 1.04719 1.00872 1.47590 1.07184 1.05645 1.72544 1.22323 0.98629 0.83987 0.98797 1.22562 0.85270 0.98298 0.91359 0.88198 1.86634 1.32276 1.58964 1.57501 1.21212 0.96375 0.92819 0.89810 1.42246 1.61777 1.32245 1.00757 1.19260 1.23648 1.02590 0.91839 0.91191 1.24771 1.01192 0.99428 0.95597 1.69692 1.49090 1.40765 0.98218 0.86111 0.79719 0.82545 0.77759 1.20567 1.21831 1.21858 1.18146 0.87072 0.83305 0.77114 1.90849 1.13245 1.86938 1.48776 1.19640 0.95374 0.94773 0.99513 1.20814 1.01162 0.90597 0.99061 1.16858 0.92018 0.86359 0.94205 1.91557 1.85651 1.59951 1.72412 1.18886 0.94533 0.90859 0.96977 1.68048 1.08337 1.20519 1.20527 1.23094 0.90482 0.99206 0.90643 1.21990 1.01921 0.94441 1.00535 1.21526 0.92458 0.97700 0.95919 1.18531 0.96677 0.94503 0.99236 1.21832 0.92929 0.96474 0.98312 0.92523 0.89775 0.90601 0.89724 0.88408 0.78705 0.96234 0.95451 0.77660 0.93536 0.82816 0.81808 0.83850 0.83507 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.66 59.85 0.52 1.03 16 2 N -0.60 -6.62 2.84 -182.72 -0.52 -7.14 16 3 C 0.09 1.04 5.09 -4.04 -0.02 1.02 16 4 C 0.09 1.38 3.30 -26.73 -0.09 1.29 16 5 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 6 O -0.55 -8.70 11.98 -35.23 -0.42 -9.13 16 7 C 0.13 2.50 5.92 -4.04 -0.02 2.47 16 8 N -0.73 -18.84 5.49 -59.91 -0.33 -19.17 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 C 0.56 7.34 7.33 -12.36 -0.09 7.25 16 18 O -0.52 -8.87 16.47 5.31 0.09 -8.79 16 19 C -0.09 -0.98 5.23 -104.99 -0.55 -1.53 16 20 C -0.10 -1.12 9.49 -39.52 -0.38 -1.50 16 21 C 0.13 1.52 7.29 -39.39 -0.29 1.23 16 22 F -0.12 -1.55 17.10 2.25 0.04 -1.51 16 23 C 0.11 1.20 6.61 -84.72 -0.56 0.64 16 24 N -0.47 -4.95 10.19 -10.88 -0.11 -5.06 16 25 C 0.14 0.91 11.15 -17.46 -0.19 0.72 16 26 C -0.17 -0.77 10.03 -39.78 -0.40 -1.17 16 27 C -0.05 -0.26 9.89 -39.18 -0.39 -0.65 16 28 C -0.09 -0.72 5.74 -106.82 -0.61 -1.33 16 29 C -0.08 -0.60 7.30 -38.74 -0.28 -0.89 16 30 H 0.06 0.25 6.91 -51.93 -0.36 -0.11 16 31 H 0.08 0.59 7.19 -51.92 -0.37 0.21 16 32 H 0.08 0.54 5.80 -51.93 -0.30 0.24 16 33 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 35 H 0.37 4.47 9.04 45.56 0.41 4.88 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.39 10.93 7.54 -40.82 -0.31 10.62 16 39 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.15 1.84 8.05 -52.48 -0.42 1.42 16 41 H 0.16 0.57 8.06 -52.48 -0.42 0.14 16 42 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 43 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 44 H 0.15 0.76 5.32 -52.49 -0.28 0.48 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -37.61 376.55 -7.99 -45.61 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.52 Total: 8.95 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.60 Total: 1.02 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.23 Total: -59.56 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.33 Total: -17.91 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.61 -7.99 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571592383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.496 kcal (2) G-P(sol) polarization free energy of solvation -37.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds