Wall clock time and date at job start Wed Apr 1 2020 04:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00281 * 2 1 4 4 C 1.52993 * 109.47460 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47060 * 64.99704 * 4 3 2 6 6 C 1.37094 * 120.00016 * 270.00082 * 5 4 3 7 7 H 1.08001 * 120.00007 * 143.08799 * 6 5 4 8 8 C 1.38957 * 120.00155 * 323.08753 * 6 5 4 9 9 N 1.31411 * 119.99677 * 338.29854 * 8 6 5 10 10 Si 1.86797 * 120.00139 * 158.29693 * 8 6 5 11 11 H 1.48504 * 109.46852 * 90.00003 * 10 8 6 12 12 H 1.48495 * 109.47122 * 210.00216 * 10 8 6 13 13 H 1.48503 * 109.47066 * 330.00597 * 10 8 6 14 14 C 1.34775 * 119.99982 * 90.00332 * 5 4 3 15 15 O 1.21291 * 119.99870 * 354.72604 * 14 5 4 16 16 C 1.50699 * 120.00287 * 174.72735 * 14 5 4 17 17 O 1.42897 * 109.47442 * 182.17289 * 16 14 5 18 18 C 1.35868 * 116.99982 * 181.82887 * 17 16 14 19 19 C 1.38825 * 119.93952 * 185.46655 * 18 17 16 20 20 C 1.37919 * 120.06539 * 180.02562 * 19 18 17 21 21 C 1.39345 * 119.93563 * 359.97438 * 20 19 18 22 22 C 1.48429 * 120.06295 * 179.97438 * 21 20 19 23 23 N 1.34056 * 126.67145 * 0.02738 * 22 21 20 24 24 N 1.28985 * 107.26669 * 179.97438 * 23 22 21 25 25 N 1.28730 * 108.94561 * 359.97438 * 24 23 22 26 26 H 0.97003 * 125.34176 * 179.97438 * 25 24 23 27 27 N 1.28867 * 109.32235 * 0.02562 * 25 24 23 28 28 C 1.39351 * 119.87622 * 0.25866 * 21 20 19 29 29 C 1.37916 * 119.93578 * 359.50916 * 28 21 20 30 30 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47247 * 300.00649 * 1 2 3 32 32 H 1.09005 * 109.47183 * 60.00208 * 1 2 3 33 33 H 1.09003 * 109.47449 * 59.99287 * 3 2 1 34 34 H 1.09002 * 109.46916 * 299.99616 * 3 2 1 35 35 H 1.09001 * 109.47550 * 305.00095 * 4 3 2 36 36 H 1.09007 * 109.47733 * 184.99603 * 4 3 2 37 37 H 0.97005 * 120.00014 * 185.04757 * 9 8 6 38 38 H 1.09002 * 109.46813 * 62.16808 * 16 14 5 39 39 H 1.09003 * 109.46850 * 302.17652 * 16 14 5 40 40 H 1.07997 * 119.97171 * 359.97438 * 19 18 17 41 41 H 1.07993 * 120.03369 * 180.02562 * 20 19 18 42 42 H 1.08000 * 120.02843 * 179.72448 * 28 21 20 43 43 H 1.07997 * 119.96549 * 180.23647 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3345 7 1 3.8334 -1.3097 -2.2487 8 6 4.5611 -1.5237 -0.2430 9 7 5.2706 -0.9271 0.6884 10 14 4.1753 -3.3458 -0.0998 11 1 5.2471 -4.1322 -0.7617 12 1 4.0974 -3.7240 1.3341 13 1 2.8748 -3.6296 -0.7581 14 6 4.2633 1.3328 -2.3200 15 8 4.0653 2.5286 -2.2776 16 6 4.8300 0.7067 -3.5682 17 8 5.0949 1.7258 -4.5343 18 6 5.5768 1.3233 -5.7392 19 6 5.9623 2.2670 -6.6815 20 6 6.4514 1.8613 -7.9056 21 6 6.5588 0.5027 -8.1959 22 6 7.0841 0.0629 -9.5126 23 7 7.4925 0.8526 -10.5159 24 7 7.8738 0.0829 -11.4781 25 7 7.7213 -1.1435 -11.1177 26 1 7.9340 -1.9185 -11.6609 27 7 7.2408 -1.1801 -9.9226 28 6 6.1664 -0.4424 -7.2499 29 6 5.6826 -0.0310 -6.0257 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1766 0.0901 37 1 5.6557 -1.4461 1.4118 38 1 4.1112 -0.0035 -3.9769 39 1 5.7566 0.1866 -3.3253 40 1 5.8785 3.3199 -6.4562 41 1 6.7515 2.5958 -8.6381 42 1 6.2445 -1.4960 -7.4740 43 1 5.3820 -0.7630 -5.2908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591421907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:26 Heat of formation + Delta-G solvation = 47.656384 kcal Electronic energy + Delta-G solvation = -29385.449360 eV Core-core repulsion = 25049.295678 eV Total energy + Delta-G solvation = -4336.153682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.57301 -40.05277 -38.69747 -37.39572 -36.75807 -34.73824 -34.43907 -33.43782 -31.68345 -31.13849 -30.17553 -29.50555 -27.31010 -25.80157 -24.89698 -24.73602 -24.10695 -22.66320 -21.84098 -21.28691 -19.43112 -19.14359 -18.04641 -17.27230 -17.26763 -16.47209 -16.08003 -15.82157 -15.42616 -15.30789 -15.22163 -14.59125 -14.39631 -14.32970 -14.10866 -13.90096 -13.41624 -13.37750 -13.05824 -12.73877 -12.60122 -12.31397 -12.02596 -11.91030 -11.64975 -11.49608 -11.34830 -11.26313 -11.21662 -11.03954 -10.99389 -10.80193 -10.69069 -10.41429 -10.29082 -10.11346 -9.22542 -9.03364 -9.00354 -8.52931 -7.98660 -7.59286 -6.43584 -4.11054 0.71088 1.10073 1.37207 2.08567 2.31973 3.08479 3.21255 3.24602 3.30556 3.61586 3.73224 3.83026 4.09098 4.10661 4.49000 4.77033 4.85892 4.95319 5.01464 5.17351 5.25193 5.35008 5.48498 5.64048 5.66433 5.70626 5.72921 5.81221 5.93649 5.98722 6.02862 6.05495 6.15583 6.21631 6.27514 6.28865 6.39973 6.44198 6.62154 6.71793 7.19428 7.37928 7.62051 7.73270 7.93204 8.01040 8.27106 9.02201 9.37564 9.79611 10.59047 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002320 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.297214 B =12065.468287 C =13054.572126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.421 5.421 6 C -0.337 4.337 7 H 0.086 0.914 8 C 0.057 3.943 9 N -0.859 5.859 10 Si 0.917 3.083 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.468 3.532 15 O -0.591 6.591 16 C 0.059 3.941 17 O -0.288 6.288 18 C 0.168 3.832 19 C -0.159 4.159 20 C -0.035 4.035 21 C -0.079 4.079 22 C 0.237 3.763 23 N -0.274 5.274 24 N -0.054 5.054 25 N -0.231 5.231 26 H 0.474 0.526 27 N -0.302 5.302 28 C -0.034 4.034 29 C -0.216 4.216 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.272 0.728 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -2.608 -13.934 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.141 5.141 6 C -0.465 4.465 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.495 5.495 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.256 3.744 15 O -0.476 6.476 16 C -0.018 4.018 17 O -0.198 6.198 18 C 0.119 3.881 19 C -0.178 4.178 20 C -0.055 4.055 21 C -0.083 4.083 22 C -0.042 4.042 23 N -0.147 5.147 24 N -0.049 5.049 25 N -0.077 5.077 26 H 0.328 0.672 27 N -0.154 5.154 28 C -0.054 4.054 29 C -0.235 4.235 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.078 -1.936 -14.185 14.357 hybrid contribution -0.463 -1.742 0.265 1.822 sum 0.614 -3.677 -13.920 14.411 Atomic orbital electron populations 1.22646 0.83466 1.01714 0.98852 1.88142 1.17317 1.27623 1.95033 1.23008 0.96350 0.84398 0.98722 1.21524 0.89525 0.99070 0.90716 1.43197 1.55755 1.06158 1.08943 1.19257 1.45284 0.80385 1.01535 0.89611 1.25278 0.93813 1.00082 0.95862 1.69818 1.28747 1.37066 1.13839 0.86107 0.79240 0.82477 0.77875 1.20518 1.20747 1.19117 1.19783 0.82391 0.86516 0.85706 1.90569 1.58182 1.15086 1.83803 1.22503 1.02111 0.89336 0.87870 1.86169 1.77210 1.35992 1.20455 1.19398 0.90329 0.92594 0.85749 1.20384 1.04821 0.99852 0.92723 1.20896 0.94744 0.94149 0.95698 1.17053 1.08597 0.93876 0.88777 1.23701 0.99526 0.84481 0.96541 1.76072 1.15111 1.25491 0.98065 1.78872 1.15943 0.88744 1.21367 1.47695 1.40575 1.09317 1.10122 0.67250 1.74952 1.18930 1.23812 0.97670 1.20902 0.93730 0.99295 0.91462 1.21345 1.07753 0.95208 0.99181 0.90462 0.95171 0.94968 0.94212 0.94043 0.86604 0.90956 0.91801 0.90111 0.88903 0.84236 0.84288 0.84901 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.53 10.18 -35.23 -0.36 -7.89 16 3 C 0.05 1.07 6.28 37.15 0.23 1.31 16 4 C 0.12 2.66 5.39 -4.04 -0.02 2.63 16 5 N -0.42 -10.18 2.50 -114.81 -0.29 -10.46 16 6 C -0.34 -8.10 8.08 -14.93 -0.12 -8.22 16 7 H 0.09 1.95 7.15 -52.49 -0.38 1.58 16 8 C 0.06 1.37 4.95 -17.47 -0.09 1.28 16 9 N -0.86 -21.71 11.43 55.50 0.63 -21.07 16 10 Si 0.92 19.07 29.61 -169.99 -5.03 14.04 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.47 11.15 7.69 -10.99 -0.08 11.07 16 15 O -0.59 -15.53 16.14 -14.35 -0.23 -15.76 16 16 C 0.06 1.16 3.98 36.01 0.14 1.31 16 17 O -0.29 -5.53 9.67 -39.23 -0.38 -5.91 16 18 C 0.17 2.64 6.68 -39.15 -0.26 2.38 16 19 C -0.16 -2.18 9.97 -39.48 -0.39 -2.58 16 20 C -0.03 -0.43 9.70 -39.29 -0.38 -0.81 16 21 C -0.08 -1.01 5.88 -104.87 -0.62 -1.63 16 22 C 0.24 2.96 7.93 -156.30 -1.24 1.72 16 23 N -0.27 -3.48 12.23 32.15 0.39 -3.09 16 24 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 25 N -0.23 -1.85 7.90 60.35 0.48 -1.38 16 26 H 0.47 1.41 8.96 -340.36 -3.05 -1.64 16 27 N -0.30 -3.27 12.08 32.17 0.39 -2.88 16 28 C -0.03 -0.42 9.69 -39.29 -0.38 -0.80 16 29 C -0.22 -3.01 9.05 -39.48 -0.36 -3.37 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 2.86 5.48 -51.93 -0.28 2.57 16 36 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 37 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 38 H 0.08 1.43 6.80 -51.93 -0.35 1.07 16 39 H 0.09 1.75 7.95 -51.93 -0.41 1.34 16 40 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.14 1.49 7.88 -52.49 -0.41 1.08 16 42 H 0.13 1.45 7.88 -52.49 -0.41 1.04 16 43 H 0.14 1.86 6.28 -52.49 -0.33 1.53 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -31.75 375.79 -8.07 -39.82 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.69 Total: 2.81 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.45 Total: 5.88 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 2.42 Total: -38.65 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.97 Total: -29.56 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.75 -8.07 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591421907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.476 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds