Wall clock time and date at job start Wed Apr 1 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00281 * 2 1 4 4 C 1.52993 * 109.47460 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47060 * 64.99704 * 4 3 2 6 6 C 1.37094 * 120.00016 * 270.00082 * 5 4 3 7 7 H 1.08001 * 120.00007 * 143.08799 * 6 5 4 8 8 C 1.38957 * 120.00155 * 323.08753 * 6 5 4 9 9 N 1.31411 * 119.99677 * 338.29854 * 8 6 5 10 10 Si 1.86797 * 120.00139 * 158.29693 * 8 6 5 11 11 H 1.48504 * 109.46852 * 90.00003 * 10 8 6 12 12 H 1.48495 * 109.47122 * 210.00216 * 10 8 6 13 13 H 1.48503 * 109.47066 * 330.00597 * 10 8 6 14 14 C 1.34775 * 119.99982 * 90.00332 * 5 4 3 15 15 O 1.21291 * 119.99870 * 354.72604 * 14 5 4 16 16 C 1.50699 * 120.00287 * 174.72735 * 14 5 4 17 17 O 1.42897 * 109.47442 * 182.17289 * 16 14 5 18 18 C 1.35868 * 116.99982 * 181.82887 * 17 16 14 19 19 C 1.38825 * 119.93952 * 185.46655 * 18 17 16 20 20 C 1.37919 * 120.06539 * 180.02562 * 19 18 17 21 21 C 1.39345 * 119.93563 * 359.97438 * 20 19 18 22 22 C 1.48429 * 120.06295 * 179.97438 * 21 20 19 23 23 N 1.34056 * 126.67145 * 0.02738 * 22 21 20 24 24 N 1.28985 * 107.26669 * 179.97438 * 23 22 21 25 25 N 1.28730 * 108.94561 * 359.97438 * 24 23 22 26 26 H 0.97003 * 125.34176 * 179.97438 * 25 24 23 27 27 N 1.28867 * 109.32235 * 0.02562 * 25 24 23 28 28 C 1.39351 * 119.87622 * 0.25866 * 21 20 19 29 29 C 1.37916 * 119.93578 * 359.50916 * 28 21 20 30 30 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47247 * 300.00649 * 1 2 3 32 32 H 1.09005 * 109.47183 * 60.00208 * 1 2 3 33 33 H 1.09003 * 109.47449 * 59.99287 * 3 2 1 34 34 H 1.09002 * 109.46916 * 299.99616 * 3 2 1 35 35 H 1.09001 * 109.47550 * 305.00095 * 4 3 2 36 36 H 1.09007 * 109.47733 * 184.99603 * 4 3 2 37 37 H 0.97005 * 120.00014 * 185.04757 * 9 8 6 38 38 H 1.09002 * 109.46813 * 62.16808 * 16 14 5 39 39 H 1.09003 * 109.46850 * 302.17652 * 16 14 5 40 40 H 1.07997 * 119.97171 * 359.97438 * 19 18 17 41 41 H 1.07993 * 120.03369 * 180.02562 * 20 19 18 42 42 H 1.08000 * 120.02843 * 179.72448 * 28 21 20 43 43 H 1.07997 * 119.96549 * 180.23647 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3345 7 1 3.8334 -1.3097 -2.2487 8 6 4.5611 -1.5237 -0.2430 9 7 5.2706 -0.9271 0.6884 10 14 4.1753 -3.3458 -0.0998 11 1 5.2471 -4.1322 -0.7617 12 1 4.0974 -3.7240 1.3341 13 1 2.8748 -3.6296 -0.7581 14 6 4.2633 1.3328 -2.3200 15 8 4.0653 2.5286 -2.2776 16 6 4.8300 0.7067 -3.5682 17 8 5.0949 1.7258 -4.5343 18 6 5.5768 1.3233 -5.7392 19 6 5.9623 2.2670 -6.6815 20 6 6.4514 1.8613 -7.9056 21 6 6.5588 0.5027 -8.1959 22 6 7.0841 0.0629 -9.5126 23 7 7.4925 0.8526 -10.5159 24 7 7.8738 0.0829 -11.4781 25 7 7.7213 -1.1435 -11.1177 26 1 7.9340 -1.9185 -11.6609 27 7 7.2408 -1.1801 -9.9226 28 6 6.1664 -0.4424 -7.2499 29 6 5.6826 -0.0310 -6.0257 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1766 0.0901 37 1 5.6557 -1.4461 1.4118 38 1 4.1112 -0.0035 -3.9769 39 1 5.7566 0.1866 -3.3253 40 1 5.8785 3.3199 -6.4562 41 1 6.7515 2.5958 -8.6381 42 1 6.2445 -1.4960 -7.4740 43 1 5.3820 -0.7630 -5.2908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591421907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:25 Heat of formation + Delta-G solvation = 27.283626 kcal Electronic energy + Delta-G solvation = -29386.332789 eV Core-core repulsion = 25049.295678 eV Total energy + Delta-G solvation = -4337.037111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.41571 -41.34787 -40.34010 -38.74765 -38.23022 -36.57526 -35.30636 -34.35650 -33.53968 -32.22275 -31.61858 -30.76168 -28.78132 -27.26566 -26.46823 -25.75760 -25.12090 -23.96103 -23.17795 -22.39409 -21.05705 -20.16555 -19.31193 -18.94914 -18.09975 -17.81208 -17.44637 -17.33419 -16.91908 -16.79236 -16.72010 -16.06639 -15.95618 -15.63596 -15.51033 -14.91555 -14.90173 -14.62257 -14.35752 -13.83294 -13.79660 -13.63566 -13.51825 -13.29906 -12.93462 -12.92205 -12.85054 -12.52961 -12.51014 -12.41305 -12.28574 -12.21776 -12.08178 -11.82087 -11.77002 -11.42307 -11.02946 -10.53324 -10.35814 -10.05450 -9.46883 -9.11121 -8.27166 -5.99771 -0.24422 0.21402 0.34539 1.32745 1.43394 1.46552 1.54247 1.64201 1.83178 1.97507 2.39606 2.71248 2.78334 2.99992 3.10755 3.19220 3.23019 3.80185 3.95231 4.09025 4.16886 4.24362 4.26694 4.30202 4.37403 4.45387 4.48328 4.53594 4.55101 4.61111 4.62529 4.65189 4.79146 4.87585 5.03622 5.19097 5.32765 5.34684 5.41428 5.52542 5.65216 5.66404 5.95124 6.33191 6.42588 6.45090 7.15608 7.16269 7.53373 7.95617 8.76470 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002320 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.297214 B =12065.468287 C =13054.572126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.065 3.935 4 C 0.111 3.889 5 N -0.428 5.428 6 C -0.346 4.346 7 H 0.097 0.903 8 C 0.020 3.980 9 N -0.889 5.889 10 Si 0.978 3.022 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.452 3.548 15 O -0.626 6.626 16 C 0.074 3.926 17 O -0.314 6.314 18 C 0.137 3.863 19 C -0.161 4.161 20 C -0.030 4.030 21 C -0.075 4.075 22 C 0.222 3.778 23 N -0.296 5.296 24 N -0.057 5.057 25 N -0.201 5.201 26 H 0.494 0.506 27 N -0.300 5.300 28 C -0.031 4.031 29 C -0.215 4.215 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.273 0.727 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -4.593 -15.608 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.013 4.013 5 N -0.147 5.147 6 C -0.473 4.473 7 H 0.115 0.885 8 C -0.185 4.185 9 N -0.526 5.526 10 Si 0.802 3.198 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.188 1.188 14 C 0.241 3.759 15 O -0.514 6.514 16 C -0.003 4.003 17 O -0.226 6.226 18 C 0.090 3.910 19 C -0.179 4.179 20 C -0.050 4.050 21 C -0.079 4.079 22 C -0.058 4.058 23 N -0.168 5.168 24 N -0.052 5.052 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.153 5.153 28 C -0.051 4.051 29 C -0.234 4.234 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.818 -3.943 -15.897 16.399 hybrid contribution -0.338 -1.158 0.644 1.368 sum 0.480 -5.101 -15.253 16.090 Atomic orbital electron populations 1.22885 0.80788 1.03297 1.00215 1.88070 1.20280 1.27581 1.95290 1.22782 0.94330 0.84728 0.99442 1.21490 0.91741 0.97910 0.90123 1.43427 1.55499 1.06530 1.09225 1.19574 1.45207 0.80387 1.02155 0.88512 1.26014 0.93333 1.03740 0.95375 1.69920 1.29705 1.38553 1.14459 0.85169 0.79222 0.78001 0.77408 1.19384 1.21270 1.18815 1.20505 0.82090 0.86299 0.86994 1.90525 1.59625 1.16539 1.84680 1.22239 1.02304 0.89169 0.86628 1.86111 1.78535 1.36264 1.21703 1.19657 0.92330 0.93950 0.85038 1.20526 1.04568 0.99983 0.92833 1.21038 0.94043 0.94613 0.95304 1.17218 1.07579 0.94053 0.89062 1.23632 1.00541 0.85015 0.96576 1.76059 1.15936 1.26342 0.98477 1.78827 1.16053 0.89361 1.20945 1.47761 1.38451 1.09595 1.09399 0.64709 1.74909 1.18734 1.23149 0.98478 1.21055 0.93063 1.00239 0.90720 1.21418 1.07581 0.94489 0.99864 0.88826 0.93049 0.94296 0.91524 0.95100 0.88198 0.92185 0.91726 0.88320 0.88542 0.83760 0.82660 0.83043 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -16.02 10.18 -148.98 -1.52 -17.54 16 3 C 0.06 2.63 6.28 71.98 0.45 3.09 16 4 C 0.11 5.26 5.39 86.38 0.47 5.73 16 5 N -0.43 -21.09 2.50 -635.53 -1.59 -22.68 16 6 C -0.35 -16.60 8.08 84.04 0.68 -15.92 16 7 H 0.10 4.33 7.15 -2.91 -0.02 4.31 16 8 C 0.02 0.93 4.95 84.93 0.42 1.35 16 9 N -0.89 -45.45 11.43 21.67 0.25 -45.21 16 10 Si 0.98 38.41 29.61 68.60 2.03 40.44 16 11 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 12 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 14 C 0.45 22.11 7.69 87.66 0.67 22.78 16 15 O -0.63 -34.10 16.14 15.96 0.26 -33.85 16 16 C 0.07 2.94 3.98 71.24 0.28 3.22 16 17 O -0.31 -12.34 9.67 -73.04 -0.71 -13.04 16 18 C 0.14 4.32 6.68 22.55 0.15 4.47 16 19 C -0.16 -4.37 9.97 22.33 0.22 -4.14 16 20 C -0.03 -0.71 9.70 22.46 0.22 -0.49 16 21 C -0.08 -1.80 5.88 -20.03 -0.12 -1.92 16 22 C 0.22 5.09 7.93 137.36 1.09 6.18 16 23 N -0.30 -6.96 12.23 -52.20 -0.64 -7.60 16 24 N -0.06 -1.08 13.47 37.02 0.50 -0.58 16 25 N -0.20 -2.67 7.90 37.02 0.29 -2.38 16 26 H 0.49 1.42 8.96 -347.53 -3.12 -1.69 16 27 N -0.30 -5.71 12.08 -52.14 -0.63 -6.34 16 28 C -0.03 -0.72 9.69 22.46 0.22 -0.50 16 29 C -0.21 -5.79 9.05 22.33 0.20 -5.59 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.10 5.07 5.48 -2.39 -0.01 5.06 16 36 H 0.06 2.91 7.50 -2.38 -0.02 2.89 16 37 H 0.27 13.20 8.32 -92.70 -0.77 12.43 16 38 H 0.10 3.47 6.80 -2.39 -0.02 3.45 16 39 H 0.10 3.68 7.95 -2.39 -0.02 3.66 16 40 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.16 3.11 7.88 -2.91 -0.02 3.09 16 42 H 0.15 2.93 7.88 -2.91 -0.02 2.91 16 43 H 0.15 3.71 6.28 -2.91 -0.02 3.69 16 Total: -1.00 -68.74 375.79 2.42 -66.32 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -2.04 Total: 22.23 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.21 Total: 20.23 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.82 Total: -84.80 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.96 Total: -64.43 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -68.74 2.42 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591421907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.606 kcal (2) G-P(sol) polarization free energy of solvation -68.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds