Wall clock time and date at job start Wed Apr 1 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48503 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47222 * 300.00057 * 3 2 1 6 6 H 1.48506 * 109.46952 * 59.99886 * 3 2 1 7 7 C 1.38819 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99639 * 197.37039 * 7 2 1 9 9 N 1.36930 * 119.99684 * 17.36341 * 7 2 1 10 10 C 1.46923 * 120.63522 * 27.67819 * 9 7 2 11 11 C 1.53187 * 108.77896 * 126.40668 * 10 9 7 12 12 C 1.53048 * 109.31248 * 54.63901 * 11 10 9 13 13 H 1.08989 * 109.45921 * 58.64056 * 12 11 10 14 14 N 1.46500 * 109.45842 * 178.61332 * 12 11 10 15 15 C 1.34768 * 120.00343 * 275.30002 * 14 12 11 16 16 O 1.21710 * 119.99700 * 359.72842 * 15 14 12 17 17 C 1.46603 * 120.00290 * 179.72678 * 15 14 12 18 18 C 1.38031 * 126.00708 * 179.69169 * 17 15 14 19 19 C 1.39400 * 107.42848 * 179.84674 * 18 17 15 20 20 C 1.37754 * 107.65103 * 0.41581 * 19 18 17 21 21 C 1.47910 * 125.81953 * 179.74497 * 20 19 18 22 22 N 1.34209 * 126.70432 * 180.02562 * 21 20 19 23 23 N 1.28982 * 107.25326 * 179.97438 * 22 21 20 24 24 N 1.28717 * 108.99667 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.31920 * 180.02562 * 24 23 22 26 26 N 1.28871 * 109.36221 * 359.72535 * 24 23 22 27 27 N 1.36396 * 108.36086 * 359.74435 * 20 19 18 28 28 H 0.96995 * 125.70775 * 180.02562 * 27 20 19 29 29 C 1.53038 * 109.52279 * 298.62534 * 12 11 10 30 30 H 1.09003 * 109.50093 * 301.42057 * 29 12 11 31 31 O 1.42898 * 109.49568 * 181.32273 * 29 12 11 32 32 C 1.46929 * 120.62998 * 207.69212 * 9 7 2 33 33 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 34 34 H 1.09000 * 109.58421 * 6.62011 * 10 9 7 35 35 H 1.08997 * 109.58625 * 246.19891 * 10 9 7 36 36 H 1.09002 * 109.50098 * 294.68730 * 11 10 9 37 37 H 1.08998 * 109.52747 * 174.60564 * 11 10 9 38 38 H 0.97003 * 119.99582 * 95.03108 * 14 12 11 39 39 H 1.07997 * 126.29151 * 359.96054 * 18 17 15 40 40 H 1.07997 * 126.17335 * 180.13823 * 19 18 17 41 41 H 0.96708 * 114.00165 * 180.02562 * 31 29 12 42 42 H 1.09000 * 109.58778 * 353.38090 * 32 9 7 43 43 H 1.08998 * 109.58567 * 113.66035 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3723 -2.3608 -0.3550 10 6 0.2279 -2.3338 -1.2759 11 6 0.5008 -3.3033 -2.4302 12 6 0.8185 -4.6889 -1.8631 13 1 -0.0206 -5.0354 -1.2599 14 7 1.0475 -5.6265 -2.9652 15 6 0.0034 -6.2425 -3.5539 16 8 -1.1295 -6.0237 -3.1666 17 6 0.2322 -7.1763 -4.6607 18 6 -0.7402 -7.8764 -5.3459 19 6 -0.0972 -8.6424 -6.3169 20 6 1.2557 -8.4077 -6.2058 21 6 2.3120 -9.0209 -7.0400 22 7 3.6334 -8.8057 -6.9471 23 7 4.2032 -9.5289 -7.8504 24 7 3.3005 -10.1805 -8.4964 25 1 3.4681 -10.7960 -9.2271 26 7 2.1397 -9.8921 -8.0167 27 7 1.4550 -7.5135 -5.1954 28 1 2.3145 -7.1720 -4.9029 29 6 2.0742 -4.6093 -0.9920 30 1 2.9080 -4.2389 -1.5885 31 8 2.3880 -5.9090 -0.4877 32 6 1.8191 -3.6548 0.1788 33 1 -0.4850 0.8401 -0.0004 34 1 0.0987 -1.3253 -1.6687 35 1 -0.6744 -2.6404 -0.7467 36 1 1.3495 -2.9454 -3.0130 37 1 -0.3796 -3.3652 -3.0699 38 1 1.9505 -5.8009 -3.2737 39 1 -1.8041 -7.8366 -5.1644 40 1 -0.5733 -9.3041 -7.0253 41 1 3.1745 -5.9335 0.0745 42 1 2.7398 -3.5179 0.7459 43 1 1.0477 -4.0680 0.8286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:17 Heat of formation + Delta-G solvation = 80.830650 kcal Electronic energy + Delta-G solvation = -29750.930688 eV Core-core repulsion = 25448.508301 eV Total energy + Delta-G solvation = -4302.422387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.52375 -42.38905 -40.76200 -39.25230 -36.98339 -35.86377 -35.44192 -34.50026 -33.83693 -32.34997 -31.80712 -30.56857 -29.88646 -27.17878 -25.76715 -25.56871 -24.16456 -23.72075 -22.79075 -21.57245 -21.43328 -20.97836 -20.52195 -19.56320 -18.78259 -18.22462 -18.02510 -17.38754 -17.18971 -16.68426 -16.30931 -15.72168 -15.63631 -15.45792 -15.15915 -15.09651 -14.93964 -14.81981 -14.47880 -13.95559 -13.88418 -13.73213 -13.60229 -13.28580 -13.16917 -12.97156 -12.75930 -12.49479 -12.38986 -12.28125 -12.10989 -12.06402 -12.02284 -11.88803 -11.50225 -11.19020 -11.03566 -10.58628 -10.18959 -10.13886 -9.20467 -8.76878 -7.90214 -5.37267 -0.26951 0.14062 0.88536 1.20001 1.47667 1.49909 1.60076 1.81631 1.89016 2.02259 2.28385 2.49188 2.61743 3.10691 3.17161 3.27020 3.62091 3.73444 3.87552 4.03892 4.04468 4.19631 4.21310 4.27480 4.38330 4.39381 4.52843 4.65835 4.83863 4.89454 4.93103 5.01656 5.12014 5.13668 5.34063 5.39500 5.49210 5.57272 5.61146 5.66767 5.72934 6.12855 6.34091 6.46298 6.87025 7.02530 7.08290 7.09938 7.78238 8.30633 9.17221 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002196 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.792626 B =12748.339647 C =13216.580275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.263 4.263 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.130 4.130 12 C 0.171 3.829 13 H 0.062 0.938 14 N -0.701 5.701 15 C 0.585 3.415 16 O -0.566 6.566 17 C -0.026 4.026 18 C -0.115 4.115 19 C -0.136 4.136 20 C 0.105 3.895 21 C 0.232 3.768 22 N -0.299 5.299 23 N -0.051 5.051 24 N -0.194 5.194 25 H 0.497 0.503 26 N -0.274 5.274 27 N -0.506 5.506 28 H 0.431 0.569 29 C 0.102 3.898 30 H 0.074 0.926 31 O -0.571 6.571 32 C 0.117 3.883 33 H 0.251 0.749 34 H 0.063 0.937 35 H -0.006 1.006 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.161 0.839 40 H 0.178 0.822 41 H 0.396 0.604 42 H 0.076 0.924 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -22.447 -17.832 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.170 4.170 12 C 0.066 3.934 13 H 0.080 0.920 14 N -0.351 5.351 15 C 0.373 3.627 16 O -0.445 6.445 17 C -0.143 4.143 18 C -0.141 4.141 19 C -0.164 4.164 20 C -0.015 4.015 21 C -0.048 4.048 22 N -0.172 5.172 23 N -0.045 5.045 24 N -0.046 5.046 25 H 0.357 0.643 26 N -0.128 5.128 27 N -0.103 5.103 28 H 0.271 0.729 29 C 0.041 3.959 30 H 0.092 0.908 31 O -0.378 6.378 32 C -0.009 4.009 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.012 0.988 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.493 -22.352 -17.964 29.639 hybrid contribution 0.872 1.172 0.419 1.520 sum 8.365 -21.180 -17.546 28.747 Atomic orbital electron populations 1.70205 1.06883 1.25984 1.55057 1.25872 0.95997 1.01798 1.01041 0.85183 0.78813 0.79654 0.76618 1.18567 1.21822 1.22194 1.19582 0.93205 0.85510 1.40985 0.90556 1.44267 1.35681 1.02099 1.50778 1.20560 0.87877 0.97744 0.88561 1.22339 1.01386 0.94276 0.99005 1.20702 0.97558 0.88470 0.86640 0.91995 1.45748 1.09456 1.44430 1.35481 1.17301 0.84762 0.79414 0.81244 1.90858 1.23637 1.65135 1.64834 1.20322 0.85748 1.06417 1.01844 1.21471 0.99570 0.97125 0.95925 1.21353 0.89583 1.03538 1.01895 1.17024 0.91175 0.99192 0.94108 1.22436 0.90184 0.96638 0.95587 1.76170 1.05121 1.19312 1.16576 1.78854 1.18743 1.04404 1.02546 1.47834 0.99871 1.30506 1.26366 0.64266 1.74970 1.08661 1.16790 1.12333 1.41790 1.08666 1.33693 1.26192 0.72896 1.22316 0.95659 0.83282 0.94688 0.90789 1.86457 1.52255 1.28358 1.70727 1.21690 0.98767 0.86230 0.94233 0.94021 0.91839 0.98824 0.91193 0.92127 0.75696 0.82104 0.80473 0.75342 0.90603 0.96873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.25 11.19 21.65 0.24 -55.00 16 2 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 3 Si 0.97 43.83 29.59 68.60 2.03 45.86 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.26 -13.87 9.59 84.04 0.81 -13.07 16 8 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 9 N -0.60 -29.40 2.99 -699.10 -2.09 -31.49 16 10 C 0.18 8.78 5.31 86.36 0.46 9.24 16 11 C -0.13 -5.06 5.65 30.67 0.17 -4.89 16 12 C 0.17 5.96 2.12 45.02 0.10 6.06 16 13 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 14 N -0.70 -19.65 4.91 -446.45 -2.19 -21.84 16 15 C 0.58 17.93 7.75 86.43 0.67 18.60 16 16 O -0.57 -22.15 16.54 -4.38 -0.07 -22.22 16 17 C -0.03 -0.63 7.04 40.36 0.28 -0.34 16 18 C -0.11 -2.45 10.60 22.50 0.24 -2.21 16 19 C -0.14 -2.34 10.79 22.44 0.24 -2.10 16 20 C 0.10 1.92 7.12 40.88 0.29 2.21 16 21 C 0.23 4.03 8.21 137.11 1.13 5.16 16 22 N -0.30 -5.59 12.54 -52.41 -0.66 -6.25 16 23 N -0.05 -0.74 13.46 37.02 0.50 -0.24 16 24 N -0.19 -1.59 7.90 37.02 0.29 -1.30 16 25 H 0.50 -1.02 8.96 -347.51 -3.11 -4.13 16 26 N -0.27 -3.65 12.39 -52.36 -0.65 -4.30 16 27 N -0.51 -9.47 6.03 -172.29 -1.04 -10.51 16 28 H 0.43 6.54 8.17 -92.71 -0.76 5.79 16 29 C 0.10 3.18 3.14 30.67 0.10 3.28 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 O -0.57 -15.04 13.16 -148.98 -1.96 -17.00 16 32 C 0.12 4.60 6.14 86.36 0.53 5.13 16 33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.06 3.49 6.04 -2.39 -0.01 3.48 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.41 8.73 7.71 -92.71 -0.71 8.02 16 39 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.40 6.83 9.08 -74.05 -0.67 6.16 16 42 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -76.41 368.88 -4.30 -80.71 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -4.13 Total: 18.92 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 5.43 Total: 24.66 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.60 Total: -130.93 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.03 Total: -39.22 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.41 -4.30 -80.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.539 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds