Wall clock time and date at job start Wed Apr 1 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00045 * 2 1 4 4 H 1.48495 * 109.46824 * 85.00532 * 3 2 1 5 5 H 1.48499 * 109.46881 * 205.00441 * 3 2 1 6 6 H 1.48501 * 109.46845 * 325.00213 * 3 2 1 7 7 C 1.38815 * 119.99907 * 180.28184 * 2 1 3 8 8 H 1.08001 * 119.99880 * 184.81990 * 7 2 1 9 9 N 1.36938 * 120.00030 * 4.81615 * 7 2 1 10 10 C 1.47070 * 136.05773 * 4.74379 * 9 7 2 11 11 C 1.53761 * 87.88485 * 152.96451 * 10 9 7 12 12 C 1.53002 * 114.08288 * 139.77914 * 11 10 9 13 13 C 1.52999 * 109.47215 * 201.34913 * 12 11 10 14 14 O 1.42895 * 109.47056 * 185.00068 * 13 12 11 15 15 N 1.46499 * 114.57553 * 272.66567 * 11 10 9 16 16 C 1.34771 * 120.00011 * 279.67284 * 15 11 10 17 17 O 1.21623 * 119.99862 * 5.25024 * 16 15 11 18 18 C 1.47314 * 119.99985 * 185.24452 * 16 15 11 19 19 C 1.37826 * 126.52669 * 359.69244 * 18 16 15 20 20 N 1.34782 * 108.25065 * 179.86910 * 19 18 16 21 21 H 0.97004 * 125.36225 * 180.12228 * 20 19 18 22 22 C 1.37308 * 109.26872 * 0.39822 * 20 19 18 23 23 C 1.47999 * 125.75995 * 179.77524 * 22 20 19 24 24 N 1.34181 * 126.69894 * 179.66264 * 23 22 20 25 25 N 1.28977 * 107.25950 * 179.86990 * 24 23 22 26 26 N 1.28721 * 108.98147 * 0.39612 * 25 24 23 27 27 H 0.97008 * 125.32313 * 179.76941 * 26 25 24 28 28 N 1.28865 * 109.36120 * 359.74680 * 26 25 24 29 29 C 1.35697 * 108.47753 * 359.75484 * 22 20 19 30 30 C 1.47066 * 136.05529 * 185.12198 * 9 7 2 31 31 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 32 32 H 1.08991 * 113.47064 * 267.70159 * 10 9 7 33 33 H 1.09000 * 113.46175 * 38.14575 * 10 9 7 34 34 H 1.08997 * 109.47301 * 321.36030 * 12 11 10 35 35 H 1.09003 * 109.46595 * 81.35058 * 12 11 10 36 36 H 1.08998 * 109.46862 * 305.00743 * 13 12 11 37 37 H 1.09010 * 109.46379 * 65.00412 * 13 12 11 38 38 H 0.96703 * 113.99709 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99717 * 99.67505 * 15 11 10 40 40 H 1.07996 * 125.86914 * 359.97438 * 19 18 16 41 41 H 1.07999 * 126.47504 * 180.02562 * 29 22 20 42 42 H 1.09001 * 113.46834 * 321.86087 * 30 9 7 43 43 H 1.08996 * 113.46916 * 92.24734 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 1.3947 5 1 3.5965 1.4119 -0.5918 6 1 1.5044 2.6198 -0.8030 7 6 2.0102 -1.2022 -0.0059 8 1 3.0874 -1.2042 0.0727 9 7 1.3292 -2.3855 -0.1113 10 6 -0.0706 -2.7870 -0.3171 11 6 0.4546 -4.0844 -0.9534 12 6 -0.3391 -5.3345 -0.5683 13 6 0.5273 -6.5764 -0.7877 14 8 -0.2502 -7.7494 -0.5397 15 7 0.7278 -3.9915 -2.3897 16 6 -0.2834 -4.0872 -3.2755 17 8 -1.4322 -4.1547 -2.8820 18 6 0.0029 -4.1099 -4.7204 19 6 1.2456 -4.0357 -5.3118 20 7 1.0810 -4.0915 -6.6483 21 1 1.7955 -4.0608 -7.3037 22 6 -0.2577 -4.1925 -6.9362 23 6 -0.8473 -4.2732 -8.2913 24 7 -2.1503 -4.3786 -8.5939 25 7 -2.2426 -4.4176 -9.8798 26 7 -1.0613 -4.3500 -10.3866 27 1 -0.8560 -4.3633 -11.3346 28 7 -0.1938 -4.2614 -9.4378 29 6 -0.9489 -4.2063 -5.7685 30 6 1.6746 -3.8141 -0.0619 31 1 -0.4850 0.8400 0.0004 32 1 -0.6167 -2.9493 0.6121 33 1 -0.6078 -2.1457 -1.0159 34 1 -0.6271 -5.2731 0.4811 35 1 -1.2338 -5.4017 -1.1872 36 1 0.8884 -6.5904 -1.8160 37 1 1.3765 -6.5522 -0.1046 38 1 0.2364 -8.5764 -0.6597 39 1 1.6365 -3.8611 -2.7031 40 1 2.1890 -3.9495 -4.7932 41 1 -2.0208 -4.2776 -5.6578 42 1 2.6243 -4.0480 -0.5431 43 1 1.5895 -4.2471 0.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:40 Heat of formation + Delta-G solvation = 152.069403 kcal Electronic energy + Delta-G solvation = -30019.485180 eV Core-core repulsion = 25720.151938 eV Total energy + Delta-G solvation = -4299.333243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.73149 -41.43342 -39.68200 -37.44666 -36.48812 -34.66979 -33.67440 -33.32818 -32.07097 -31.29361 -30.54265 -29.20617 -27.03503 -24.88382 -24.83836 -24.36452 -23.64776 -22.76547 -21.26674 -20.91055 -19.60595 -19.50384 -18.68772 -18.23158 -17.44907 -17.19475 -16.61578 -16.13633 -15.19908 -14.90107 -14.86540 -14.80917 -14.49211 -14.24139 -13.93082 -13.68961 -13.66610 -13.44313 -13.41080 -12.66174 -12.58755 -12.38431 -12.31325 -11.68676 -11.51820 -11.47434 -11.43950 -11.27813 -11.21523 -10.92672 -10.82115 -10.56539 -10.02602 -9.84246 -9.76667 -9.44727 -9.13303 -9.06077 -8.77623 -8.37404 -8.22144 -6.87980 -5.75295 -3.08483 0.65252 1.19801 1.88662 1.90039 2.65329 2.72642 3.38640 3.41636 3.42613 3.46457 3.76881 3.93176 4.07677 4.38419 4.49945 4.83505 4.94811 5.00963 5.12756 5.15273 5.33160 5.36506 5.45451 5.49271 5.60553 5.76181 5.91694 5.98864 6.03352 6.05345 6.23231 6.33068 6.38153 6.48280 6.54672 6.63265 6.78791 7.01932 7.09254 7.26808 7.39927 7.66423 7.81572 7.84640 7.98408 8.14390 8.86163 9.03591 9.70854 10.63829 11.42040 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.003027 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.209572 B = 9248.314732 C =11344.435724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.164 3.836 11 C 0.123 3.877 12 C -0.117 4.117 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.688 5.688 16 C 0.588 3.412 17 O -0.533 6.533 18 C -0.212 4.212 19 C 0.072 3.928 20 N -0.526 5.526 21 H 0.423 0.577 22 C 0.049 3.951 23 C 0.258 3.742 24 N -0.256 5.256 25 N -0.045 5.045 26 N -0.228 5.228 27 H 0.475 0.525 28 N -0.313 5.313 29 C -0.056 4.056 30 C 0.118 3.882 31 H 0.255 0.745 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.371 0.629 39 H 0.396 0.604 40 H 0.184 0.816 41 H 0.160 0.840 42 H 0.041 0.959 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -13.672 -18.379 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.037 3.963 11 C 0.035 3.965 12 C -0.157 4.157 13 C 0.004 3.996 14 O -0.380 6.380 15 N -0.337 5.337 16 C 0.375 3.625 17 O -0.410 6.410 18 C -0.222 4.222 19 C -0.069 4.069 20 N -0.120 5.120 21 H 0.261 0.739 22 C -0.063 4.063 23 C -0.021 4.021 24 N -0.129 5.129 25 N -0.040 5.040 26 N -0.074 5.074 27 H 0.329 0.671 28 N -0.165 5.165 29 C -0.084 4.084 30 C -0.009 4.009 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.217 0.783 39 H 0.230 0.770 40 H 0.201 0.799 41 H 0.178 0.822 42 H 0.059 0.941 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.403 -12.934 -18.529 22.851 hybrid contribution 2.333 0.821 -0.783 2.595 sum 5.736 -12.113 -19.312 23.507 Atomic orbital electron populations 1.69855 1.04978 1.25453 1.55420 1.24831 0.95601 0.97542 1.02136 0.86147 0.78576 0.83743 0.77489 1.21657 1.20625 1.21648 1.18855 0.90065 0.81387 1.44777 0.90184 1.45663 1.04423 0.98903 1.84158 1.22378 0.88269 0.89054 0.96584 1.21917 0.98609 0.95724 0.80255 1.21662 1.00142 0.90821 1.03025 1.22181 0.93500 0.85270 0.98619 1.86521 1.42229 1.16079 1.93141 1.45159 1.09713 1.73669 1.05180 1.17206 0.85038 0.76222 0.84001 1.90754 1.20528 1.49991 1.79772 1.19789 0.92627 1.15917 0.93845 1.22476 0.99777 1.02544 0.82092 1.41465 1.06764 1.56214 1.07599 0.73922 1.16352 0.83246 1.19119 0.87630 1.22518 0.87458 1.00764 0.91383 1.76206 1.16373 1.17660 1.02684 1.78961 1.06970 1.14475 1.03615 1.47616 1.01957 1.46105 1.11705 0.67085 1.74933 1.21210 1.23875 0.96525 1.21025 1.00114 0.99074 0.88213 1.22694 0.94452 0.87704 0.96071 0.93530 0.94631 0.91067 0.90579 0.88760 0.94111 0.93976 0.78329 0.77029 0.79860 0.82224 0.94090 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.42 11.72 55.49 0.65 -26.77 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.07 10.74 -15.06 -0.16 -6.23 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -14.97 3.77 -184.55 -0.70 -15.67 16 10 C 0.16 3.96 6.67 -8.36 -0.06 3.90 16 11 C 0.12 2.28 0.70 -131.56 -0.09 2.19 16 12 C -0.12 -2.02 4.92 -26.73 -0.13 -2.15 16 13 C 0.08 1.13 6.81 37.16 0.25 1.39 16 14 O -0.58 -7.93 13.66 -35.23 -0.48 -8.41 16 15 N -0.69 -11.33 5.06 -48.39 -0.24 -11.57 16 16 C 0.59 10.35 7.53 -12.57 -0.09 10.26 16 17 O -0.53 -11.43 14.95 5.26 0.08 -11.35 16 18 C -0.21 -2.99 6.14 -104.95 -0.64 -3.63 16 19 C 0.07 0.71 11.44 -16.41 -0.19 0.52 16 20 N -0.53 -4.69 6.01 -9.19 -0.06 -4.75 16 21 H 0.42 2.49 8.96 -40.82 -0.37 2.13 16 22 C 0.05 0.57 7.08 -82.32 -0.58 -0.01 16 23 C 0.26 2.98 8.20 -156.25 -1.28 1.70 16 24 N -0.26 -3.22 12.52 32.09 0.40 -2.82 16 25 N -0.04 -0.45 13.47 60.35 0.81 0.36 16 26 N -0.23 -1.56 7.90 60.35 0.48 -1.09 16 27 H 0.48 0.85 8.96 -340.34 -3.05 -2.20 16 28 N -0.31 -2.85 12.41 32.11 0.40 -2.46 16 29 C -0.06 -0.78 10.59 -39.09 -0.41 -1.20 16 30 C 0.12 2.24 7.39 -8.50 -0.06 2.17 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 33 H 0.07 2.00 7.46 -51.93 -0.39 1.61 16 34 H 0.08 1.32 7.99 -51.93 -0.42 0.91 16 35 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 36 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 37 H 0.04 0.52 7.80 -51.92 -0.41 0.12 16 38 H 0.37 3.15 9.12 45.56 0.42 3.57 16 39 H 0.40 5.46 7.60 -40.82 -0.31 5.15 16 40 H 0.18 1.20 7.45 -52.49 -0.39 0.81 16 41 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 42 H 0.04 0.69 8.13 -51.93 -0.42 0.26 16 43 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -38.56 373.77 -8.46 -47.03 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.86 Total: 6.28 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -3.55 Total: 8.72 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 1.74 Total: -64.76 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.40 Total: -19.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.56 -8.46 -47.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.094 kcal (2) G-P(sol) polarization free energy of solvation -38.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds