Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00045 * 2 1 4 4 H 1.48495 * 109.46824 * 85.00532 * 3 2 1 5 5 H 1.48499 * 109.46881 * 205.00441 * 3 2 1 6 6 H 1.48501 * 109.46845 * 325.00213 * 3 2 1 7 7 C 1.38815 * 119.99907 * 180.28184 * 2 1 3 8 8 H 1.08001 * 119.99880 * 184.81990 * 7 2 1 9 9 N 1.36938 * 120.00030 * 4.81615 * 7 2 1 10 10 C 1.47070 * 136.05773 * 4.74379 * 9 7 2 11 11 C 1.53761 * 87.88485 * 152.96451 * 10 9 7 12 12 C 1.53002 * 114.08288 * 139.77914 * 11 10 9 13 13 C 1.52999 * 109.47215 * 201.34913 * 12 11 10 14 14 O 1.42895 * 109.47056 * 185.00068 * 13 12 11 15 15 N 1.46499 * 114.57553 * 272.66567 * 11 10 9 16 16 C 1.34771 * 120.00011 * 279.67284 * 15 11 10 17 17 O 1.21623 * 119.99862 * 5.25024 * 16 15 11 18 18 C 1.47314 * 119.99985 * 185.24452 * 16 15 11 19 19 C 1.37826 * 126.52669 * 359.69244 * 18 16 15 20 20 N 1.34782 * 108.25065 * 179.86910 * 19 18 16 21 21 H 0.97004 * 125.36225 * 180.12228 * 20 19 18 22 22 C 1.37308 * 109.26872 * 0.39822 * 20 19 18 23 23 C 1.47999 * 125.75995 * 179.77524 * 22 20 19 24 24 N 1.34181 * 126.69894 * 179.66264 * 23 22 20 25 25 N 1.28977 * 107.25950 * 179.86990 * 24 23 22 26 26 N 1.28721 * 108.98147 * 0.39612 * 25 24 23 27 27 H 0.97008 * 125.32313 * 179.76941 * 26 25 24 28 28 N 1.28865 * 109.36120 * 359.74680 * 26 25 24 29 29 C 1.35697 * 108.47753 * 359.75484 * 22 20 19 30 30 C 1.47066 * 136.05529 * 185.12198 * 9 7 2 31 31 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 32 32 H 1.08991 * 113.47064 * 267.70159 * 10 9 7 33 33 H 1.09000 * 113.46175 * 38.14575 * 10 9 7 34 34 H 1.08997 * 109.47301 * 321.36030 * 12 11 10 35 35 H 1.09003 * 109.46595 * 81.35058 * 12 11 10 36 36 H 1.08998 * 109.46862 * 305.00743 * 13 12 11 37 37 H 1.09010 * 109.46379 * 65.00412 * 13 12 11 38 38 H 0.96703 * 113.99709 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99717 * 99.67505 * 15 11 10 40 40 H 1.07996 * 125.86914 * 359.97438 * 19 18 16 41 41 H 1.07999 * 126.47504 * 180.02562 * 29 22 20 42 42 H 1.09001 * 113.46834 * 321.86087 * 30 9 7 43 43 H 1.08996 * 113.46916 * 92.24734 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 1.3947 5 1 3.5965 1.4119 -0.5918 6 1 1.5044 2.6198 -0.8030 7 6 2.0102 -1.2022 -0.0059 8 1 3.0874 -1.2042 0.0727 9 7 1.3292 -2.3855 -0.1113 10 6 -0.0706 -2.7870 -0.3171 11 6 0.4546 -4.0844 -0.9534 12 6 -0.3391 -5.3345 -0.5683 13 6 0.5273 -6.5764 -0.7877 14 8 -0.2502 -7.7494 -0.5397 15 7 0.7278 -3.9915 -2.3897 16 6 -0.2834 -4.0872 -3.2755 17 8 -1.4322 -4.1547 -2.8820 18 6 0.0029 -4.1099 -4.7204 19 6 1.2456 -4.0357 -5.3118 20 7 1.0810 -4.0915 -6.6483 21 1 1.7955 -4.0608 -7.3037 22 6 -0.2577 -4.1925 -6.9362 23 6 -0.8473 -4.2732 -8.2913 24 7 -2.1503 -4.3786 -8.5939 25 7 -2.2426 -4.4176 -9.8798 26 7 -1.0613 -4.3500 -10.3866 27 1 -0.8560 -4.3633 -11.3346 28 7 -0.1938 -4.2614 -9.4378 29 6 -0.9489 -4.2063 -5.7685 30 6 1.6746 -3.8141 -0.0619 31 1 -0.4850 0.8400 0.0004 32 1 -0.6167 -2.9493 0.6121 33 1 -0.6078 -2.1457 -1.0159 34 1 -0.6271 -5.2731 0.4811 35 1 -1.2338 -5.4017 -1.1872 36 1 0.8884 -6.5904 -1.8160 37 1 1.3765 -6.5522 -0.1046 38 1 0.2364 -8.5764 -0.6597 39 1 1.6365 -3.8611 -2.7031 40 1 2.1890 -3.9495 -4.7932 41 1 -2.0208 -4.2776 -5.6578 42 1 2.6243 -4.0480 -0.5431 43 1 1.5895 -4.2471 0.9348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = 117.328995 kcal Electronic energy + Delta-G solvation = -30020.991638 eV Core-core repulsion = 25720.151938 eV Total energy + Delta-G solvation = -4300.839700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.50916 -42.38743 -41.18643 -38.97461 -37.61871 -35.46637 -35.06203 -34.46617 -33.74646 -32.49180 -31.86424 -30.15166 -28.89731 -26.55844 -25.72595 -25.49097 -24.85046 -23.99014 -22.89578 -21.84453 -20.80159 -20.35251 -20.08542 -19.14969 -18.69177 -18.21701 -18.20101 -17.34023 -16.91503 -16.42835 -16.10455 -15.72526 -15.70436 -15.46657 -15.18641 -15.09308 -15.01322 -14.77862 -14.56322 -14.23954 -13.97594 -13.35863 -13.32903 -13.26339 -13.00868 -12.85992 -12.74658 -12.48286 -12.35156 -12.32409 -12.25308 -12.06188 -11.80075 -11.63623 -11.13900 -10.97360 -10.80535 -10.49779 -10.12675 -9.80275 -9.19358 -8.89766 -7.86160 -5.20397 -0.11352 0.34218 0.83647 1.33397 1.47646 1.49942 1.59114 1.77280 1.86573 2.28378 2.49930 2.66121 2.76261 3.21785 3.28597 3.36033 3.60644 3.76327 3.93820 4.07185 4.16203 4.24196 4.33428 4.37106 4.45136 4.53009 4.59709 4.76821 4.79223 4.84731 4.94594 5.00791 5.09682 5.25582 5.30504 5.40729 5.47796 5.55128 5.56441 5.66878 5.85860 5.95161 6.40809 6.85622 6.91614 7.04405 7.05655 7.54086 7.64573 8.63625 9.31999 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.003027 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.209572 B = 9248.314732 C =11344.435724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.291 1.291 5 H -0.256 1.256 6 H -0.303 1.303 7 C -0.219 4.219 8 H 0.099 0.901 9 N -0.630 5.630 10 C 0.156 3.844 11 C 0.151 3.849 12 C -0.114 4.114 13 C 0.092 3.908 14 O -0.596 6.596 15 N -0.678 5.678 16 C 0.585 3.415 17 O -0.585 6.585 18 C -0.251 4.251 19 C 0.112 3.888 20 N -0.503 5.503 21 H 0.443 0.557 22 C 0.054 3.946 23 C 0.243 3.757 24 N -0.293 5.293 25 N -0.052 5.052 26 N -0.195 5.195 27 H 0.496 0.504 28 N -0.297 5.297 29 C -0.083 4.083 30 C 0.128 3.872 31 H 0.244 0.756 32 H 0.012 0.988 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.412 0.588 40 H 0.229 0.771 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -15.086 -20.344 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.219 1.219 5 H -0.180 1.180 6 H -0.231 1.231 7 C -0.347 4.347 8 H 0.116 0.884 9 N -0.355 5.355 10 C 0.028 3.972 11 C 0.063 3.937 12 C -0.154 4.154 13 C 0.015 3.985 14 O -0.404 6.404 15 N -0.329 5.329 16 C 0.375 3.625 17 O -0.466 6.466 18 C -0.260 4.260 19 C -0.031 4.031 20 N -0.099 5.099 21 H 0.285 0.715 22 C -0.059 4.059 23 C -0.037 4.037 24 N -0.166 5.166 25 N -0.047 5.047 26 N -0.046 5.046 27 H 0.356 0.644 28 N -0.151 5.151 29 C -0.112 4.112 30 C 0.003 3.997 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.245 0.755 41 H 0.154 0.846 42 H 0.099 0.901 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.912 -14.410 -20.557 26.322 hybrid contribution 0.947 1.184 -0.290 1.544 sum 8.859 -13.227 -20.847 26.230 Atomic orbital electron populations 1.70101 1.06951 1.25358 1.58175 1.25729 0.96287 1.01293 1.03215 0.85054 0.78115 0.79094 0.77012 1.21858 1.17981 1.23054 1.19391 0.91039 0.82301 1.42002 0.88365 1.45952 1.04592 1.00820 1.84156 1.22301 0.88122 0.91652 0.95092 1.21461 0.97662 0.93242 0.81370 1.21542 0.99641 0.92419 1.01757 1.22012 0.92792 0.83684 1.00053 1.86456 1.43428 1.17279 1.93254 1.45021 1.10475 1.73352 1.04042 1.17744 0.84341 0.74886 0.85543 1.90730 1.22691 1.52355 1.80870 1.19498 0.94775 1.20002 0.91744 1.22942 0.99553 0.98500 0.82066 1.41428 1.06201 1.54433 1.07815 0.71548 1.16195 0.84174 1.18334 0.87152 1.22496 0.87380 1.01941 0.91872 1.76200 1.17462 1.19073 1.03824 1.78912 1.07842 1.15012 1.02960 1.47712 1.00960 1.43394 1.12582 0.64446 1.74892 1.21005 1.23096 0.96079 1.20916 0.99569 1.01024 0.89651 1.22810 0.96063 0.83944 0.96923 0.94740 0.97076 0.96244 0.91452 0.91757 0.92786 0.91450 0.75428 0.75041 0.75507 0.84575 0.90061 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.39 11.72 21.65 0.25 -60.14 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.98 45.40 29.56 68.60 2.03 47.43 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 7 C -0.22 -11.75 10.74 84.03 0.90 -10.85 16 8 H 0.10 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.63 -31.00 3.77 -737.78 -2.78 -33.78 16 10 C 0.16 7.92 6.67 83.27 0.56 8.47 16 11 C 0.15 5.60 0.70 4.17 0.00 5.60 16 12 C -0.11 -3.97 4.92 30.59 0.15 -3.82 16 13 C 0.09 2.33 6.81 71.98 0.49 2.82 16 14 O -0.60 -15.25 13.66 -148.98 -2.03 -17.29 16 15 N -0.68 -21.78 5.06 -425.27 -2.15 -23.93 16 16 C 0.59 21.17 7.53 86.63 0.65 21.82 16 17 O -0.59 -27.06 14.95 -4.10 -0.06 -27.12 16 18 C -0.25 -7.00 6.14 -20.08 -0.12 -7.12 16 19 C 0.11 1.85 11.44 84.14 0.96 2.82 16 20 N -0.50 -7.40 6.01 -183.00 -1.10 -8.50 16 21 H 0.44 3.30 8.96 -92.71 -0.83 2.47 16 22 C 0.05 1.22 7.08 40.29 0.29 1.50 16 23 C 0.24 5.37 8.20 137.15 1.13 6.49 16 24 N -0.29 -7.40 12.52 -52.37 -0.66 -8.06 16 25 N -0.05 -1.00 13.47 37.02 0.50 -0.50 16 26 N -0.20 -2.25 7.90 37.02 0.29 -1.96 16 27 H 0.50 0.38 8.96 -347.51 -3.12 -2.73 16 28 N -0.30 -4.72 12.41 -52.32 -0.65 -5.37 16 29 C -0.08 -2.42 10.59 22.59 0.24 -2.18 16 30 C 0.13 4.55 7.39 83.18 0.61 5.16 16 31 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.01 0.62 8.00 -2.39 -0.02 0.60 16 33 H 0.02 1.16 7.46 -2.39 -0.02 1.14 16 34 H 0.07 2.41 7.99 -2.39 -0.02 2.39 16 35 H 0.06 2.66 6.01 -2.39 -0.01 2.65 16 36 H 0.05 1.23 7.91 -2.39 -0.02 1.22 16 37 H 0.07 1.39 7.80 -2.38 -0.02 1.37 16 38 H 0.40 5.59 9.12 -74.06 -0.68 4.91 16 39 H 0.41 10.13 7.60 -92.71 -0.70 9.42 16 40 H 0.23 1.68 7.45 -2.91 -0.02 1.66 16 41 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 43 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 Total: -1.00 -91.52 373.77 -4.23 -95.75 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -4.19 Total: 16.39 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.32 Total: 27.07 kcal Atomic # 7 Polarization: -135.93 SS G_CDS: -6.29 Total: -142.23 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.10 Total: -44.41 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -91.52 -4.23 -95.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.083 kcal (2) G-P(sol) polarization free energy of solvation -91.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds