Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86802 * 120.00037 * 2 1 4 4 H 1.48503 * 109.46951 * 269.99910 * 3 2 1 5 5 H 1.48498 * 109.46974 * 29.99843 * 3 2 1 6 6 H 1.48502 * 109.47026 * 149.99965 * 3 2 1 7 7 C 1.39951 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99639 * 197.84518 * 7 2 1 9 9 C 1.41391 * 119.99934 * 17.84847 * 7 2 1 10 10 C 1.40712 * 120.24316 * 204.38355 * 9 7 2 11 11 C 1.37618 * 119.74382 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24890 * 0.02833 * 11 10 9 13 13 C 1.50708 * 119.74936 * 179.97438 * 12 11 10 14 14 N 1.46892 * 109.47464 * 89.99545 * 13 12 11 15 15 C 1.47916 * 110.99966 * 290.12972 * 14 13 12 16 16 C 1.54605 * 102.59524 * 265.49977 * 15 14 13 17 17 C 1.51548 * 102.83529 * 334.52114 * 16 15 14 18 18 C 1.38813 * 108.00986 * 15.82366 * 17 16 15 19 19 C 1.39451 * 119.15957 * 180.54271 * 18 17 16 20 20 C 1.38014 * 120.44849 * 359.68688 * 19 18 17 21 21 C 1.38052 * 120.40467 * 0.05561 * 20 19 18 22 22 C 1.38933 * 131.58996 * 196.00578 * 17 16 15 23 23 C 1.48475 * 120.07904 * 359.61603 * 22 17 16 24 24 N 1.34039 * 126.67447 * 359.66549 * 23 22 17 25 25 N 1.28989 * 107.27094 * 179.86661 * 24 23 22 26 26 N 1.28734 * 108.93955 * 0.40323 * 25 24 23 27 27 H 0.96998 * 125.33773 * 179.78215 * 26 25 24 28 28 N 1.28870 * 109.31424 * 359.74117 * 26 25 24 29 29 C 1.38632 * 120.50230 * 0.24545 * 12 11 10 30 30 C 1.37617 * 120.24597 * 359.44987 * 29 12 11 31 31 H 0.96998 * 120.00153 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.12808 * 359.97438 * 10 9 7 33 33 H 1.08005 * 119.87472 * 180.02562 * 11 10 9 34 34 H 1.08998 * 109.46709 * 329.99497 * 13 12 11 35 35 H 1.09000 * 109.46749 * 210.00206 * 13 12 11 36 36 H 1.08996 * 110.77940 * 147.22870 * 15 14 13 37 37 H 1.08998 * 110.94821 * 23.85630 * 15 14 13 38 38 H 1.08998 * 110.73984 * 216.18487 * 16 15 14 39 39 H 1.09004 * 110.73907 * 92.85855 * 16 15 14 40 40 H 1.08002 * 119.77309 * 179.97438 * 19 18 17 41 41 H 1.08003 * 119.80140 * 180.02562 * 20 19 18 42 42 H 1.07998 * 120.13127 * 180.10386 * 21 20 19 43 43 H 1.08000 * 119.87704 * 179.70687 * 29 12 11 44 44 H 1.08006 * 120.12962 * 180.27304 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3520 -2.4072 -0.3742 10 6 1.8258 -3.6498 0.0856 11 6 1.1798 -4.8067 -0.2860 12 6 0.0667 -4.7511 -1.1105 13 6 -0.6317 -6.0252 -1.5109 14 7 -1.6776 -6.3398 -0.5286 15 6 -1.0853 -6.7496 0.7634 16 6 -1.0559 -8.2910 0.6470 17 6 -2.1718 -8.5756 -0.3381 18 6 -2.4917 -7.3868 -0.9795 19 6 -3.5077 -7.3821 -1.9346 20 6 -4.1826 -8.5457 -2.2435 21 6 -3.8610 -9.7292 -1.6097 22 6 -2.8500 -9.7473 -0.6500 23 6 -2.4992 -11.0157 0.0375 24 7 -1.5523 -11.1850 0.9709 25 7 -1.5688 -12.4289 1.3120 26 7 -2.4742 -13.0376 0.6285 27 1 -2.6865 -13.9817 0.6939 28 7 -3.0546 -12.1954 -0.1555 29 6 -0.4054 -3.5329 -1.5741 30 6 0.2210 -2.3628 -1.2102 31 1 -0.4850 0.8400 0.0004 32 1 2.6935 -3.6955 0.7269 33 1 1.5414 -5.7616 0.0660 34 1 0.0911 -6.8402 -1.5457 35 1 -1.0835 -5.8980 -2.4947 36 1 -1.7168 -6.4365 1.5948 37 1 -0.0771 -6.3506 0.8739 38 1 -1.2643 -8.7549 1.6110 39 1 -0.0976 -8.6301 0.2533 40 1 -3.7650 -6.4627 -2.4394 41 1 -4.9674 -8.5302 -2.9853 42 1 -4.3908 -10.6375 -1.8561 43 1 -1.2706 -3.5017 -2.2197 44 1 -0.1511 -1.4145 -1.5689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592682208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = 185.656457 kcal Electronic energy + Delta-G solvation = -28592.075369 eV Core-core repulsion = 24705.047833 eV Total energy + Delta-G solvation = -3887.027536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.63951 -40.72191 -37.83929 -36.63371 -34.62964 -33.85059 -33.71588 -32.01346 -30.61541 -29.45497 -28.88550 -28.81556 -26.40539 -24.87508 -24.46596 -23.70592 -22.34616 -21.27761 -20.93995 -20.66714 -19.69943 -19.18335 -17.33955 -17.30881 -16.67895 -15.95430 -15.57558 -15.36615 -15.18380 -14.69601 -14.26819 -14.04237 -13.81488 -13.57619 -13.48380 -12.98367 -12.76875 -12.57482 -12.36802 -12.19104 -11.97595 -11.82478 -11.64923 -11.57320 -11.52395 -11.29752 -11.14359 -11.06984 -11.03483 -10.91389 -10.76194 -10.51465 -10.40736 -9.69669 -9.37975 -9.20214 -9.10167 -8.68546 -7.71743 -7.43312 -7.28467 -6.75907 -4.35024 0.58549 1.03580 1.30205 2.01847 2.23923 2.73287 3.06799 3.08032 3.10850 3.16492 3.51627 3.69650 3.92907 3.97972 4.06432 4.58724 4.73449 4.89337 4.99493 5.11973 5.24570 5.30872 5.38070 5.43328 5.54265 5.67739 5.73550 5.80102 5.87990 6.02988 6.10697 6.12829 6.21739 6.25126 6.30802 6.35227 6.37234 6.42081 6.48879 6.69448 6.96208 7.06569 7.19320 7.30194 7.38493 7.51068 7.61576 7.87195 7.95718 8.05951 8.13336 8.30212 8.64962 8.89715 8.98017 10.18156 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002135 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.206509 B =13113.948937 C =13932.894160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.227 4.227 11 C -0.083 4.083 12 C -0.212 4.212 13 C 0.125 3.875 14 N -0.484 5.484 15 C 0.046 3.954 16 C -0.105 4.105 17 C -0.098 4.098 18 C 0.103 3.897 19 C -0.096 4.096 20 C -0.107 4.107 21 C -0.103 4.103 22 C 0.003 3.997 23 C 0.227 3.773 24 N -0.263 5.263 25 N -0.053 5.053 26 N -0.231 5.231 27 H 0.474 0.526 28 N -0.298 5.298 29 C -0.078 4.078 30 C -0.167 4.167 31 H 0.281 0.719 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -20.137 -2.122 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.214 4.214 13 C 0.002 3.998 14 N -0.200 5.200 15 C -0.081 4.081 16 C -0.143 4.143 17 C -0.103 4.103 18 C 0.006 3.994 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.001 4.001 23 C -0.053 4.053 24 N -0.136 5.136 25 N -0.048 5.048 26 N -0.077 5.077 27 H 0.328 0.672 28 N -0.150 5.150 29 C -0.096 4.096 30 C -0.187 4.187 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.105 0.895 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.083 -19.831 -1.600 21.474 hybrid contribution 0.257 -0.289 -0.189 0.430 sum -7.826 -20.120 -1.789 21.663 Atomic orbital electron populations 1.69830 1.07560 1.29225 1.34830 1.25919 0.94720 1.01311 0.92302 0.86327 0.80511 0.80659 0.79309 1.19282 1.20333 1.18638 1.19615 0.98132 0.91307 1.40072 0.90466 1.17629 0.91057 0.91979 0.88275 1.20930 1.03808 0.92861 1.07022 1.20353 0.95782 0.96222 0.97817 1.18792 1.00500 0.92714 1.09373 1.20848 0.90283 0.95459 0.93228 1.60356 1.19913 1.35412 1.04281 1.23285 1.01918 0.91613 0.91261 1.21747 0.96270 0.97545 0.98720 1.21051 0.97321 0.92005 0.99889 1.19741 0.95334 0.89130 0.95199 1.20721 0.94506 0.98893 0.97576 1.20795 1.00082 0.91602 1.00104 1.20954 0.96804 0.98880 0.95782 1.16563 0.99048 0.86086 0.98445 1.23792 0.92664 0.92874 0.95947 1.76167 1.18597 1.06113 1.12710 1.78936 1.08899 1.01218 1.15789 1.47717 1.22405 1.13656 1.23891 0.67232 1.74911 1.22890 1.00345 1.16847 1.20479 0.97657 0.92460 0.99053 1.21306 0.99493 0.96734 1.01129 0.90849 0.89097 0.89676 0.94818 0.91326 0.89799 0.88206 0.88975 0.89882 0.85225 0.85015 0.85099 0.89508 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.31 10.95 55.55 0.61 -19.70 16 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.11 2.97 5.57 -106.83 -0.60 2.38 16 10 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 11 C -0.08 -1.78 8.21 -39.66 -0.33 -2.10 16 12 C -0.21 -4.44 5.13 -104.33 -0.54 -4.98 16 13 C 0.13 2.18 4.94 -4.98 -0.02 2.16 16 14 N -0.48 -8.09 5.03 -170.39 -0.86 -8.95 16 15 C 0.05 0.72 6.72 -2.42 -0.02 0.70 16 16 C -0.10 -1.46 5.90 -26.62 -0.16 -1.61 16 17 C -0.10 -1.38 6.09 -103.73 -0.63 -2.01 16 18 C 0.10 1.53 5.53 -83.42 -0.46 1.07 16 19 C -0.10 -1.21 10.06 -39.21 -0.39 -1.60 16 20 C -0.11 -1.11 10.01 -39.73 -0.40 -1.51 16 21 C -0.10 -1.13 9.71 -39.21 -0.38 -1.51 16 22 C 0.00 0.03 5.87 -104.98 -0.62 -0.58 16 23 C 0.23 2.84 7.93 -156.31 -1.24 1.60 16 24 N -0.26 -3.44 10.88 32.16 0.35 -3.09 16 25 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 26 N -0.23 -1.78 7.90 60.35 0.48 -1.31 16 27 H 0.47 1.22 8.96 -340.37 -3.05 -1.84 16 28 N -0.30 -3.07 12.08 32.17 0.39 -2.68 16 29 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 30 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 31 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.09 1.60 7.10 -52.48 -0.37 1.23 16 34 H 0.03 0.56 7.97 -51.93 -0.41 0.15 16 35 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.64 4.92 -51.93 -0.26 1.39 16 38 H 0.09 1.24 7.54 -51.93 -0.39 0.85 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.13 1.19 7.89 -52.49 -0.41 0.77 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.12 3.11 6.16 -52.48 -0.32 2.78 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -29.91 368.52 -12.73 -42.64 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.72 Total: 5.05 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -7.31 Total: -31.28 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 1.78 Total: -35.48 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.91 -12.73 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.293 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds