Wall clock time and date at job start Wed Apr 1 2020 04:23:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30816 * 1
3 3 Si 1.86802 * 120.00037 * 2 1
4 4 H 1.48503 * 109.46951 * 269.99910 * 3 2 1
5 5 H 1.48498 * 109.46974 * 29.99843 * 3 2 1
6 6 H 1.48502 * 109.47026 * 149.99965 * 3 2 1
7 7 C 1.39951 * 120.00084 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99639 * 197.84518 * 7 2 1
9 9 C 1.41391 * 119.99934 * 17.84847 * 7 2 1
10 10 C 1.40712 * 120.24316 * 204.38355 * 9 7 2
11 11 C 1.37618 * 119.74382 * 180.02562 * 10 9 7
12 12 C 1.38631 * 120.24890 * 0.02833 * 11 10 9
13 13 C 1.50708 * 119.74936 * 179.97438 * 12 11 10
14 14 N 1.46892 * 109.47464 * 89.99545 * 13 12 11
15 15 C 1.47916 * 110.99966 * 290.12972 * 14 13 12
16 16 C 1.54605 * 102.59524 * 265.49977 * 15 14 13
17 17 C 1.51548 * 102.83529 * 334.52114 * 16 15 14
18 18 C 1.38813 * 108.00986 * 15.82366 * 17 16 15
19 19 C 1.39451 * 119.15957 * 180.54271 * 18 17 16
20 20 C 1.38014 * 120.44849 * 359.68688 * 19 18 17
21 21 C 1.38052 * 120.40467 * 0.05561 * 20 19 18
22 22 C 1.38933 * 131.58996 * 196.00578 * 17 16 15
23 23 C 1.48475 * 120.07904 * 359.61603 * 22 17 16
24 24 N 1.34039 * 126.67447 * 359.66549 * 23 22 17
25 25 N 1.28989 * 107.27094 * 179.86661 * 24 23 22
26 26 N 1.28734 * 108.93955 * 0.40323 * 25 24 23
27 27 H 0.96998 * 125.33773 * 179.78215 * 26 25 24
28 28 N 1.28870 * 109.31424 * 359.74117 * 26 25 24
29 29 C 1.38632 * 120.50230 * 0.24545 * 12 11 10
30 30 C 1.37617 * 120.24597 * 359.44987 * 29 12 11
31 31 H 0.96998 * 120.00153 * 359.97438 * 1 2 3
32 32 H 1.08001 * 120.12808 * 359.97438 * 10 9 7
33 33 H 1.08005 * 119.87472 * 180.02562 * 11 10 9
34 34 H 1.08998 * 109.46709 * 329.99497 * 13 12 11
35 35 H 1.09000 * 109.46749 * 210.00206 * 13 12 11
36 36 H 1.08996 * 110.77940 * 147.22870 * 15 14 13
37 37 H 1.08998 * 110.94821 * 23.85630 * 15 14 13
38 38 H 1.08998 * 110.73984 * 216.18487 * 16 15 14
39 39 H 1.09004 * 110.73907 * 92.85855 * 16 15 14
40 40 H 1.08002 * 119.77309 * 179.97438 * 19 18 17
41 41 H 1.08003 * 119.80140 * 180.02562 * 20 19 18
42 42 H 1.07998 * 120.13127 * 180.10386 * 21 20 19
43 43 H 1.08000 * 119.87704 * 179.70687 * 29 12 11
44 44 H 1.08006 * 120.12962 * 180.27304 * 30 29 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 2.4897 2.0464 -1.4001
5 1 1.4396 2.6527 0.7000
6 1 3.5397 1.4401 0.7001
7 6 2.0079 -1.2120 0.0005
8 1 3.0490 -1.2343 0.2872
9 6 1.3520 -2.4072 -0.3742
10 6 1.8258 -3.6498 0.0856
11 6 1.1798 -4.8067 -0.2860
12 6 0.0667 -4.7511 -1.1105
13 6 -0.6317 -6.0252 -1.5109
14 7 -1.6776 -6.3398 -0.5286
15 6 -1.0853 -6.7496 0.7634
16 6 -1.0559 -8.2910 0.6470
17 6 -2.1718 -8.5756 -0.3381
18 6 -2.4917 -7.3868 -0.9795
19 6 -3.5077 -7.3821 -1.9346
20 6 -4.1826 -8.5457 -2.2435
21 6 -3.8610 -9.7292 -1.6097
22 6 -2.8500 -9.7473 -0.6500
23 6 -2.4992 -11.0157 0.0375
24 7 -1.5523 -11.1850 0.9709
25 7 -1.5688 -12.4289 1.3120
26 7 -2.4742 -13.0376 0.6285
27 1 -2.6865 -13.9817 0.6939
28 7 -3.0546 -12.1954 -0.1555
29 6 -0.4054 -3.5329 -1.5741
30 6 0.2210 -2.3628 -1.2102
31 1 -0.4850 0.8400 0.0004
32 1 2.6935 -3.6955 0.7269
33 1 1.5414 -5.7616 0.0660
34 1 0.0911 -6.8402 -1.5457
35 1 -1.0835 -5.8980 -2.4947
36 1 -1.7168 -6.4365 1.5948
37 1 -0.0771 -6.3506 0.8739
38 1 -1.2643 -8.7549 1.6110
39 1 -0.0976 -8.6301 0.2533
40 1 -3.7650 -6.4627 -2.4394
41 1 -4.9674 -8.5302 -2.9853
42 1 -4.3908 -10.6375 -1.8561
43 1 -1.2706 -3.5017 -2.2197
44 1 -0.1511 -1.4145 -1.5689
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001592682208.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:23:49
Heat of formation + Delta-G solvation = 169.323206 kcal
Electronic energy + Delta-G solvation = -28592.783632 eV
Core-core repulsion = 24705.047833 eV
Total energy + Delta-G solvation = -3887.735799 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.144 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-45.45154 -41.81731 -39.47365 -37.86577 -35.63598 -35.46114 -34.57350 -33.33962
-31.92540 -31.20871 -30.25597 -29.90968 -27.98220 -25.78749 -25.42007 -25.17519
-23.49404 -22.79933 -22.18999 -21.99296 -21.10551 -20.03715 -19.20188 -18.14317
-17.71656 -17.20135 -16.98595 -16.59237 -16.35825 -16.02954 -15.70717 -15.39394
-15.18659 -14.85788 -14.68204 -14.35317 -14.02723 -13.83397 -13.72263 -13.46498
-13.37274 -13.23538 -13.05749 -12.74115 -12.69282 -12.57063 -12.39381 -12.32100
-12.24569 -12.08842 -12.00360 -11.94849 -11.88973 -11.40613 -11.20795 -10.99334
-10.31892 -9.60099 -9.31603 -9.22615 -8.77190 -8.60592 -6.30518 -0.28729
0.19393 0.34462 0.97331 1.18857 1.33147 1.38964 1.43475 1.52053
1.52743 2.22132 2.61401 2.66604 2.79058 2.95447 3.20022 3.64317
3.81018 3.85047 4.08270 4.12932 4.21864 4.23953 4.31877 4.42333
4.49504 4.53825 4.55917 4.61036 4.65372 4.74450 4.85183 4.90313
5.06219 5.09930 5.13491 5.18567 5.37860 5.40993 5.44329 5.47273
5.50600 5.62805 5.73698 5.76858 5.97810 5.99669 6.14129 6.30449
6.39266 6.42425 6.74481 6.97551 7.07668 7.13031 8.35556
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.024232 B = 0.002135 C = 0.002009
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.206509 B =13113.948937 C =13932.894160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.824 5.824
2 C 0.034 3.966
3 Si 0.981 3.019
4 H -0.262 1.262
5 H -0.268 1.268
6 H -0.259 1.259
7 C -0.501 4.501
8 H 0.073 0.927
9 C 0.080 3.920
10 C -0.242 4.242
11 C -0.080 4.080
12 C -0.196 4.196
13 C 0.133 3.867
14 N -0.498 5.498
15 C 0.044 3.956
16 C -0.092 4.092
17 C -0.110 4.110
18 C 0.077 3.923
19 C -0.100 4.100
20 C -0.095 4.095
21 C -0.093 4.093
22 C -0.007 4.007
23 C 0.211 3.789
24 N -0.292 5.292
25 N -0.061 5.061
26 N -0.200 5.200
27 H 0.494 0.506
28 N -0.290 5.290
29 C -0.083 4.083
30 C -0.191 4.191
31 H 0.287 0.713
32 H 0.095 0.905
33 H 0.114 0.886
34 H 0.042 0.958
35 H 0.078 0.922
36 H 0.079 0.921
37 H 0.088 0.912
38 H 0.092 0.908
39 H 0.081 0.919
40 H 0.136 0.864
41 H 0.168 0.832
42 H 0.154 0.846
43 H 0.104 0.896
44 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.394 -22.492 -3.075 24.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C -0.181 4.181
3 Si 0.802 3.198
4 H -0.187 1.187
5 H -0.193 1.193
6 H -0.183 1.183
7 C -0.530 4.530
8 H 0.092 0.908
9 C 0.078 3.922
10 C -0.262 4.262
11 C -0.099 4.099
12 C -0.197 4.197
13 C 0.009 3.991
14 N -0.215 5.215
15 C -0.082 4.082
16 C -0.130 4.130
17 C -0.115 4.115
18 C -0.020 4.020
19 C -0.121 4.121
20 C -0.113 4.113
21 C -0.114 4.114
22 C -0.011 4.011
23 C -0.069 4.069
24 N -0.164 5.164
25 N -0.056 5.056
26 N -0.051 5.051
27 H 0.353 0.647
28 N -0.143 5.143
29 C -0.102 4.102
30 C -0.210 4.210
31 H 0.098 0.902
32 H 0.113 0.887
33 H 0.132 0.868
34 H 0.060 0.940
35 H 0.097 0.903
36 H 0.098 0.902
37 H 0.106 0.894
38 H 0.111 0.889
39 H 0.099 0.901
40 H 0.154 0.846
41 H 0.186 0.814
42 H 0.172 0.828
43 H 0.122 0.878
44 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -9.493 -22.234 -2.544 24.309
hybrid contribution 0.540 0.108 0.076 0.556
sum -8.954 -22.126 -2.468 23.996
Atomic orbital electron populations
1.69887 1.08968 1.30443 1.35705 1.26752 0.95486 1.04489 0.91333
0.85220 0.79055 0.76024 0.79489 1.18678 1.19300 1.18290 1.19835
0.98290 0.92627 1.42296 0.90842 1.17968 0.91946 0.93067 0.89242
1.21134 1.04394 0.93182 1.07477 1.20650 0.95437 0.96637 0.97152
1.19178 0.99703 0.93703 1.07164 1.20716 0.90815 0.93612 0.93935
1.60246 1.19823 1.37187 1.04206 1.23232 1.00985 0.92984 0.91029
1.21571 0.96480 0.95980 0.98965 1.21035 0.97787 0.92499 1.00154
1.19824 0.96387 0.88723 0.97043 1.20977 0.94022 1.00155 0.96961
1.21176 0.99892 0.90341 0.99894 1.21289 0.95678 0.99996 0.94437
1.16760 0.99457 0.85889 0.98976 1.23814 0.93220 0.93427 0.96451
1.76148 1.19561 1.07140 1.13593 1.78882 1.09607 1.00845 1.16220
1.47788 1.20777 1.14424 1.22102 0.64655 1.74861 1.22613 0.99920
1.16893 1.20715 0.97935 0.92380 0.99173 1.21264 1.00376 0.97034
1.02374 0.90219 0.88698 0.86802 0.93973 0.90314 0.90235 0.89373
0.88928 0.90092 0.84584 0.81419 0.82829 0.87841 0.88345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -44.03 10.95 21.83 0.24 -43.79 16
2 C 0.03 1.76 5.14 85.26 0.44 2.20 16
3 Si 0.98 38.93 29.59 68.60 2.03 40.96 16
4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16
5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16
6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16
7 C -0.50 -27.56 9.05 23.46 0.21 -27.35 16
8 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16
9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16
10 C -0.24 -11.98 9.80 22.73 0.22 -11.75 16
11 C -0.08 -3.44 8.21 22.22 0.18 -3.26 16
12 C -0.20 -8.16 5.13 -19.67 -0.10 -8.26 16
13 C 0.13 4.50 4.94 85.56 0.42 4.92 16
14 N -0.50 -16.30 5.03 -693.00 -3.49 -19.78 16
15 C 0.04 1.38 6.72 86.65 0.58 1.97 16
16 C -0.09 -2.51 5.90 30.66 0.18 -2.33 16
17 C -0.11 -2.96 6.09 -19.29 -0.12 -3.08 16
18 C 0.08 2.16 5.53 38.25 0.21 2.37 16
19 C -0.10 -2.28 10.06 22.51 0.23 -2.05 16
20 C -0.09 -1.61 10.01 22.17 0.22 -1.39 16
21 C -0.09 -1.71 9.71 22.51 0.22 -1.50 16
22 C -0.01 -0.16 5.87 -20.10 -0.12 -0.28 16
23 C 0.21 4.86 7.93 137.39 1.09 5.95 16
24 N -0.29 -7.27 10.88 -52.18 -0.57 -7.84 16
25 N -0.06 -1.19 13.47 37.02 0.50 -0.70 16
26 N -0.20 -2.56 7.90 37.02 0.29 -2.27 16
27 H 0.49 1.05 8.96 -347.54 -3.12 -2.06 16
28 N -0.29 -5.16 12.08 -52.13 -0.63 -5.79 16
29 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16
30 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16
31 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16
32 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16
33 H 0.11 4.18 7.10 -2.91 -0.02 4.16 16
34 H 0.04 1.35 7.97 -2.39 -0.02 1.33 16
35 H 0.08 2.49 8.00 -2.39 -0.02 2.47 16
36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16
37 H 0.09 2.90 4.92 -2.39 -0.01 2.89 16
38 H 0.09 2.48 7.54 -2.39 -0.02 2.46 16
39 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16
40 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16
41 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16
42 H 0.15 2.11 7.89 -2.91 -0.02 2.09 16
43 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16
44 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16
Total: -1.00 -67.26 368.52 0.49 -66.76
By element:
Atomic # 1 Polarization: 27.71 SS G_CDS: -2.05 Total: 25.66 kcal
Atomic # 6 Polarization: -57.39 SS G_CDS: 4.17 Total: -53.22 kcal
Atomic # 7 Polarization: -76.51 SS G_CDS: -3.66 Total: -80.17 kcal
Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal
Total: -67.26 0.49 -66.76 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001592682208.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 236.087 kcal
(2) G-P(sol) polarization free energy of solvation -67.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal
(6) G-S(sol) free energy of system = (1) + (5) 169.323 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds