Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86802 * 120.00037 * 2 1 4 4 H 1.48503 * 109.46951 * 269.99910 * 3 2 1 5 5 H 1.48498 * 109.46974 * 29.99843 * 3 2 1 6 6 H 1.48502 * 109.47026 * 149.99965 * 3 2 1 7 7 C 1.39951 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99639 * 197.84518 * 7 2 1 9 9 C 1.41391 * 119.99934 * 17.84847 * 7 2 1 10 10 C 1.40712 * 120.24316 * 204.38355 * 9 7 2 11 11 C 1.37618 * 119.74382 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24890 * 0.02833 * 11 10 9 13 13 C 1.50708 * 119.74936 * 179.97438 * 12 11 10 14 14 N 1.46892 * 109.47464 * 89.99545 * 13 12 11 15 15 C 1.47916 * 110.99966 * 290.12972 * 14 13 12 16 16 C 1.54605 * 102.59524 * 265.49977 * 15 14 13 17 17 C 1.51548 * 102.83529 * 334.52114 * 16 15 14 18 18 C 1.38813 * 108.00986 * 15.82366 * 17 16 15 19 19 C 1.39451 * 119.15957 * 180.54271 * 18 17 16 20 20 C 1.38014 * 120.44849 * 359.68688 * 19 18 17 21 21 C 1.38052 * 120.40467 * 0.05561 * 20 19 18 22 22 C 1.38933 * 131.58996 * 196.00578 * 17 16 15 23 23 C 1.48475 * 120.07904 * 359.61603 * 22 17 16 24 24 N 1.34039 * 126.67447 * 359.66549 * 23 22 17 25 25 N 1.28989 * 107.27094 * 179.86661 * 24 23 22 26 26 N 1.28734 * 108.93955 * 0.40323 * 25 24 23 27 27 H 0.96998 * 125.33773 * 179.78215 * 26 25 24 28 28 N 1.28870 * 109.31424 * 359.74117 * 26 25 24 29 29 C 1.38632 * 120.50230 * 0.24545 * 12 11 10 30 30 C 1.37617 * 120.24597 * 359.44987 * 29 12 11 31 31 H 0.96998 * 120.00153 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.12808 * 359.97438 * 10 9 7 33 33 H 1.08005 * 119.87472 * 180.02562 * 11 10 9 34 34 H 1.08998 * 109.46709 * 329.99497 * 13 12 11 35 35 H 1.09000 * 109.46749 * 210.00206 * 13 12 11 36 36 H 1.08996 * 110.77940 * 147.22870 * 15 14 13 37 37 H 1.08998 * 110.94821 * 23.85630 * 15 14 13 38 38 H 1.08998 * 110.73984 * 216.18487 * 16 15 14 39 39 H 1.09004 * 110.73907 * 92.85855 * 16 15 14 40 40 H 1.08002 * 119.77309 * 179.97438 * 19 18 17 41 41 H 1.08003 * 119.80140 * 180.02562 * 20 19 18 42 42 H 1.07998 * 120.13127 * 180.10386 * 21 20 19 43 43 H 1.08000 * 119.87704 * 179.70687 * 29 12 11 44 44 H 1.08006 * 120.12962 * 180.27304 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3520 -2.4072 -0.3742 10 6 1.8258 -3.6498 0.0856 11 6 1.1798 -4.8067 -0.2860 12 6 0.0667 -4.7511 -1.1105 13 6 -0.6317 -6.0252 -1.5109 14 7 -1.6776 -6.3398 -0.5286 15 6 -1.0853 -6.7496 0.7634 16 6 -1.0559 -8.2910 0.6470 17 6 -2.1718 -8.5756 -0.3381 18 6 -2.4917 -7.3868 -0.9795 19 6 -3.5077 -7.3821 -1.9346 20 6 -4.1826 -8.5457 -2.2435 21 6 -3.8610 -9.7292 -1.6097 22 6 -2.8500 -9.7473 -0.6500 23 6 -2.4992 -11.0157 0.0375 24 7 -1.5523 -11.1850 0.9709 25 7 -1.5688 -12.4289 1.3120 26 7 -2.4742 -13.0376 0.6285 27 1 -2.6865 -13.9817 0.6939 28 7 -3.0546 -12.1954 -0.1555 29 6 -0.4054 -3.5329 -1.5741 30 6 0.2210 -2.3628 -1.2102 31 1 -0.4850 0.8400 0.0004 32 1 2.6935 -3.6955 0.7269 33 1 1.5414 -5.7616 0.0660 34 1 0.0911 -6.8402 -1.5457 35 1 -1.0835 -5.8980 -2.4947 36 1 -1.7168 -6.4365 1.5948 37 1 -0.0771 -6.3506 0.8739 38 1 -1.2643 -8.7549 1.6110 39 1 -0.0976 -8.6301 0.2533 40 1 -3.7650 -6.4627 -2.4394 41 1 -4.9674 -8.5302 -2.9853 42 1 -4.3908 -10.6375 -1.8561 43 1 -1.2706 -3.5017 -2.2197 44 1 -0.1511 -1.4145 -1.5689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592682208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = 169.323206 kcal Electronic energy + Delta-G solvation = -28592.783632 eV Core-core repulsion = 24705.047833 eV Total energy + Delta-G solvation = -3887.735799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.144 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.45154 -41.81731 -39.47365 -37.86577 -35.63598 -35.46114 -34.57350 -33.33962 -31.92540 -31.20871 -30.25597 -29.90968 -27.98220 -25.78749 -25.42007 -25.17519 -23.49404 -22.79933 -22.18999 -21.99296 -21.10551 -20.03715 -19.20188 -18.14317 -17.71656 -17.20135 -16.98595 -16.59237 -16.35825 -16.02954 -15.70717 -15.39394 -15.18659 -14.85788 -14.68204 -14.35317 -14.02723 -13.83397 -13.72263 -13.46498 -13.37274 -13.23538 -13.05749 -12.74115 -12.69282 -12.57063 -12.39381 -12.32100 -12.24569 -12.08842 -12.00360 -11.94849 -11.88973 -11.40613 -11.20795 -10.99334 -10.31892 -9.60099 -9.31603 -9.22615 -8.77190 -8.60592 -6.30518 -0.28729 0.19393 0.34462 0.97331 1.18857 1.33147 1.38964 1.43475 1.52053 1.52743 2.22132 2.61401 2.66604 2.79058 2.95447 3.20022 3.64317 3.81018 3.85047 4.08270 4.12932 4.21864 4.23953 4.31877 4.42333 4.49504 4.53825 4.55917 4.61036 4.65372 4.74450 4.85183 4.90313 5.06219 5.09930 5.13491 5.18567 5.37860 5.40993 5.44329 5.47273 5.50600 5.62805 5.73698 5.76858 5.97810 5.99669 6.14129 6.30449 6.39266 6.42425 6.74481 6.97551 7.07668 7.13031 8.35556 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002135 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.206509 B =13113.948937 C =13932.894160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.242 4.242 11 C -0.080 4.080 12 C -0.196 4.196 13 C 0.133 3.867 14 N -0.498 5.498 15 C 0.044 3.956 16 C -0.092 4.092 17 C -0.110 4.110 18 C 0.077 3.923 19 C -0.100 4.100 20 C -0.095 4.095 21 C -0.093 4.093 22 C -0.007 4.007 23 C 0.211 3.789 24 N -0.292 5.292 25 N -0.061 5.061 26 N -0.200 5.200 27 H 0.494 0.506 28 N -0.290 5.290 29 C -0.083 4.083 30 C -0.191 4.191 31 H 0.287 0.713 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.104 0.896 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -22.492 -3.075 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.262 4.262 11 C -0.099 4.099 12 C -0.197 4.197 13 C 0.009 3.991 14 N -0.215 5.215 15 C -0.082 4.082 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.020 4.020 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.011 4.011 23 C -0.069 4.069 24 N -0.164 5.164 25 N -0.056 5.056 26 N -0.051 5.051 27 H 0.353 0.647 28 N -0.143 5.143 29 C -0.102 4.102 30 C -0.210 4.210 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.154 0.846 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.122 0.878 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.493 -22.234 -2.544 24.309 hybrid contribution 0.540 0.108 0.076 0.556 sum -8.954 -22.126 -2.468 23.996 Atomic orbital electron populations 1.69887 1.08968 1.30443 1.35705 1.26752 0.95486 1.04489 0.91333 0.85220 0.79055 0.76024 0.79489 1.18678 1.19300 1.18290 1.19835 0.98290 0.92627 1.42296 0.90842 1.17968 0.91946 0.93067 0.89242 1.21134 1.04394 0.93182 1.07477 1.20650 0.95437 0.96637 0.97152 1.19178 0.99703 0.93703 1.07164 1.20716 0.90815 0.93612 0.93935 1.60246 1.19823 1.37187 1.04206 1.23232 1.00985 0.92984 0.91029 1.21571 0.96480 0.95980 0.98965 1.21035 0.97787 0.92499 1.00154 1.19824 0.96387 0.88723 0.97043 1.20977 0.94022 1.00155 0.96961 1.21176 0.99892 0.90341 0.99894 1.21289 0.95678 0.99996 0.94437 1.16760 0.99457 0.85889 0.98976 1.23814 0.93220 0.93427 0.96451 1.76148 1.19561 1.07140 1.13593 1.78882 1.09607 1.00845 1.16220 1.47788 1.20777 1.14424 1.22102 0.64655 1.74861 1.22613 0.99920 1.16893 1.20715 0.97935 0.92380 0.99173 1.21264 1.00376 0.97034 1.02374 0.90219 0.88698 0.86802 0.93973 0.90314 0.90235 0.89373 0.88928 0.90092 0.84584 0.81419 0.82829 0.87841 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.03 10.95 21.83 0.24 -43.79 16 2 C 0.03 1.76 5.14 85.26 0.44 2.20 16 3 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.56 9.05 23.46 0.21 -27.35 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.24 -11.98 9.80 22.73 0.22 -11.75 16 11 C -0.08 -3.44 8.21 22.22 0.18 -3.26 16 12 C -0.20 -8.16 5.13 -19.67 -0.10 -8.26 16 13 C 0.13 4.50 4.94 85.56 0.42 4.92 16 14 N -0.50 -16.30 5.03 -693.00 -3.49 -19.78 16 15 C 0.04 1.38 6.72 86.65 0.58 1.97 16 16 C -0.09 -2.51 5.90 30.66 0.18 -2.33 16 17 C -0.11 -2.96 6.09 -19.29 -0.12 -3.08 16 18 C 0.08 2.16 5.53 38.25 0.21 2.37 16 19 C -0.10 -2.28 10.06 22.51 0.23 -2.05 16 20 C -0.09 -1.61 10.01 22.17 0.22 -1.39 16 21 C -0.09 -1.71 9.71 22.51 0.22 -1.50 16 22 C -0.01 -0.16 5.87 -20.10 -0.12 -0.28 16 23 C 0.21 4.86 7.93 137.39 1.09 5.95 16 24 N -0.29 -7.27 10.88 -52.18 -0.57 -7.84 16 25 N -0.06 -1.19 13.47 37.02 0.50 -0.70 16 26 N -0.20 -2.56 7.90 37.02 0.29 -2.27 16 27 H 0.49 1.05 8.96 -347.54 -3.12 -2.06 16 28 N -0.29 -5.16 12.08 -52.13 -0.63 -5.79 16 29 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16 30 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 31 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 32 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.11 4.18 7.10 -2.91 -0.02 4.16 16 34 H 0.04 1.35 7.97 -2.39 -0.02 1.33 16 35 H 0.08 2.49 8.00 -2.39 -0.02 2.47 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.09 2.90 4.92 -2.39 -0.01 2.89 16 38 H 0.09 2.48 7.54 -2.39 -0.02 2.46 16 39 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.15 2.11 7.89 -2.91 -0.02 2.09 16 43 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -67.26 368.52 0.49 -66.76 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -2.05 Total: 25.66 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 4.17 Total: -53.22 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -3.66 Total: -80.17 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.26 0.49 -66.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.087 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds