Wall clock time and date at job start Wed Apr 1 2020 04:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00527 * 2 1 4 4 H 1.48493 * 109.47480 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46841 * 300.00271 * 3 2 1 6 6 H 1.48500 * 109.47098 * 59.99599 * 3 2 1 7 7 C 1.38697 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 180.02562 * 7 2 1 9 9 O 1.34819 * 120.00366 * 0.02562 * 7 2 1 10 10 C 1.35518 * 117.00286 * 174.94375 * 9 7 2 11 11 C 1.38829 * 120.16254 * 5.63059 * 10 9 7 12 12 C 1.38025 * 120.07266 * 180.02562 * 11 10 9 13 13 C 1.38568 * 120.40067 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32658 * 359.72449 * 13 12 11 15 15 C 1.39668 * 119.91162 * 0.55565 * 14 13 12 16 16 C 1.47538 * 120.19357 * 179.71961 * 15 14 13 17 17 O 1.21589 * 120.00048 * 143.85205 * 16 15 14 18 18 N 1.34775 * 119.99872 * 324.12865 * 16 15 14 19 19 C 1.46926 * 120.63358 * 4.43946 * 18 16 15 20 20 C 1.53189 * 108.77378 * 233.58488 * 19 18 16 21 21 C 1.53034 * 109.31329 * 305.36294 * 20 19 18 22 22 C 1.53038 * 109.54290 * 61.36520 * 21 20 19 23 23 C 1.46930 * 120.63072 * 184.15187 * 18 16 15 24 24 H 1.09000 * 109.59137 * 246.20190 * 23 18 16 25 25 C 1.53005 * 109.58477 * 6.63286 * 23 18 16 26 26 C 1.52995 * 109.46959 * 178.33166 * 25 23 18 27 27 C 1.50707 * 109.47158 * 184.76737 * 26 25 23 28 28 O 1.20829 * 119.99747 * 0.02562 * 27 26 25 29 29 O 1.34220 * 120.00176 * 179.97438 * 27 26 25 30 30 H 0.97006 * 119.99404 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.96610 * 0.04574 * 11 10 9 32 32 H 1.08000 * 119.79794 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.83890 * 180.02562 * 13 12 11 34 34 H 1.08000 * 120.04270 * 180.27866 * 14 13 12 35 35 H 1.08997 * 109.58136 * 353.37174 * 19 18 16 36 36 H 1.09000 * 109.59118 * 113.64916 * 19 18 16 37 37 H 1.09001 * 109.49958 * 65.31537 * 20 19 18 38 38 H 1.09005 * 109.49830 * 185.40806 * 20 19 18 39 39 H 1.09004 * 109.46171 * 181.39156 * 21 20 19 40 40 H 1.09002 * 109.45839 * 301.34145 * 21 20 19 41 41 H 1.09007 * 109.49375 * 58.58269 * 22 21 20 42 42 H 1.08994 * 109.50249 * 178.65181 * 22 21 20 43 43 H 1.08996 * 109.46685 * 298.32981 * 25 23 18 44 44 H 1.08996 * 109.47182 * 58.32795 * 25 23 18 45 45 H 1.09004 * 109.47442 * 304.76785 * 26 25 23 46 46 H 1.09004 * 109.47247 * 64.77075 * 26 25 23 47 47 H 0.96698 * 117.00087 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3345 -2.3688 0.0005 10 6 2.0685 -3.5030 -0.1053 11 6 3.4553 -3.4404 -0.0901 12 6 4.2011 -4.5968 -0.1986 13 6 3.5743 -5.8263 -0.3227 14 6 2.1985 -5.9082 -0.3335 15 6 1.4308 -4.7460 -0.2305 16 6 -0.0423 -4.8259 -0.2476 17 8 -0.7002 -4.0709 0.4420 18 7 -0.6587 -5.7394 -1.0235 19 6 0.1220 -6.7257 -1.7829 20 6 -0.2956 -6.6571 -3.2552 21 6 -1.8114 -6.8396 -3.3604 22 6 -2.5166 -5.7106 -2.6053 23 6 -2.1244 -5.7720 -1.1212 24 1 -2.4997 -6.6950 -0.6792 25 6 -2.7145 -4.5690 -0.3826 26 6 -4.2381 -4.5828 -0.5211 27 6 -4.8108 -3.3374 0.1052 28 8 -4.0755 -2.5223 0.6102 29 8 -6.1373 -3.1332 0.1013 30 1 -0.4849 0.8401 -0.0004 31 1 3.9512 -2.4859 0.0071 32 1 5.2797 -4.5430 -0.1858 33 1 4.1668 -6.7254 -0.4066 34 1 1.7148 -6.8694 -0.4260 35 1 1.1842 -6.4981 -1.6933 36 1 -0.0719 -7.7245 -1.3920 37 1 -0.0164 -5.6876 -3.6678 38 1 0.2057 -7.4483 -3.8128 39 1 -2.1081 -6.8159 -4.4090 40 1 -2.0927 -7.7986 -2.9253 41 1 -2.2164 -4.7500 -3.0240 42 1 -3.5960 -5.8277 -2.7008 43 1 -2.4451 -4.6225 0.6722 44 1 -2.3188 -3.6489 -0.8124 45 1 -4.5067 -4.6149 -1.5771 46 1 -4.6409 -5.4612 -0.0169 47 1 -6.4576 -2.3202 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:35 Heat of formation + Delta-G solvation = -97.301967 kcal Electronic energy + Delta-G solvation = -31961.795923 eV Core-core repulsion = 27690.603967 eV Total energy + Delta-G solvation = -4271.191956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47393 -39.81209 -38.72610 -36.71347 -36.49616 -35.90338 -34.06667 -32.58650 -32.29889 -30.55515 -29.52568 -28.96056 -26.05216 -25.37468 -24.36920 -22.99335 -22.29456 -21.30011 -20.60191 -20.22360 -19.00467 -18.03601 -17.74579 -16.90311 -16.38253 -16.16248 -15.94540 -15.39995 -14.92511 -14.82289 -14.43963 -14.37610 -14.23295 -14.07279 -13.59488 -13.47487 -13.34621 -13.06257 -12.92411 -12.69508 -12.41562 -12.25683 -12.06454 -11.76186 -11.61545 -11.45651 -11.24878 -11.12827 -10.99500 -10.97453 -10.87341 -10.77170 -10.50990 -10.46324 -10.40922 -10.19304 -10.12017 -9.44542 -8.85110 -8.39281 -8.12575 -8.06255 -7.28721 -6.40647 -4.01529 1.77928 2.30427 2.54450 3.13844 3.13891 3.17950 3.20313 3.48059 3.68285 3.95821 4.54105 4.77188 4.85963 4.94103 5.06511 5.13503 5.15753 5.18359 5.28077 5.29546 5.38743 5.42512 5.51533 5.56165 5.61245 5.73012 5.74807 5.84678 5.90343 5.93350 5.95814 6.05481 6.13277 6.13585 6.16740 6.37937 6.57027 6.64686 6.67720 6.73939 6.84785 6.96374 7.05612 7.21349 7.27167 7.32033 7.70374 7.93228 8.03265 8.19441 8.98629 9.06430 9.69154 10.72932 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007516 B = 0.005091 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.569943 B = 5498.729872 C = 8408.141185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.135 6.135 10 C 0.189 3.811 11 C -0.237 4.237 12 C -0.054 4.054 13 C -0.230 4.230 14 C -0.056 4.056 15 C -0.222 4.222 16 C 0.565 3.435 17 O -0.495 6.495 18 N -0.615 5.615 19 C 0.080 3.920 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.138 4.138 23 C 0.156 3.844 24 H 0.066 0.934 25 C -0.105 4.105 26 C -0.119 4.119 27 C 0.465 3.535 28 O -0.484 6.484 29 O -0.530 6.530 30 H 0.271 0.729 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -14.035 -5.868 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.478 4.478 8 H 0.111 0.889 9 O -0.034 6.034 10 C 0.130 3.870 11 C -0.256 4.256 12 C -0.072 4.072 13 C -0.249 4.249 14 C -0.075 4.075 15 C -0.226 4.226 16 C 0.356 3.644 17 O -0.370 6.370 18 N -0.352 5.352 19 C -0.042 4.042 20 C -0.175 4.175 21 C -0.154 4.154 22 C -0.176 4.176 23 C 0.053 3.947 24 H 0.084 0.916 25 C -0.142 4.142 26 C -0.157 4.157 27 C 0.305 3.695 28 O -0.369 6.369 29 O -0.343 6.343 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.986 -13.466 -5.480 15.370 hybrid contribution 0.329 1.289 0.106 1.335 sum -4.656 -12.177 -5.374 14.101 Atomic orbital electron populations 1.70128 1.05836 1.27653 1.42646 1.25374 0.95805 0.98893 0.96298 0.85681 0.79167 0.80435 0.78325 1.18999 1.20102 1.20018 1.21468 0.91823 0.80894 1.53641 0.88874 1.84085 1.33880 1.11161 1.74297 1.19211 0.89859 0.87271 0.90618 1.21146 0.93377 0.99331 1.11724 1.20883 0.98603 0.92339 0.95396 1.20482 0.94017 0.97103 1.13277 1.21085 0.93855 0.96305 0.96206 1.18825 0.92260 0.92267 1.19277 1.18253 0.87557 0.79260 0.79357 1.90914 1.64770 1.40474 1.40804 1.47938 1.05414 1.34009 1.47805 1.22558 0.99175 0.91631 0.90857 1.21940 0.96102 1.02611 0.96845 1.21493 0.95462 0.98439 1.00030 1.22191 1.00018 0.99878 0.95507 1.21171 0.80262 0.98472 0.94844 0.91646 1.22142 0.88847 0.98698 1.04527 1.21621 0.98769 0.93332 1.01967 1.23596 0.79629 0.88745 0.77513 1.90904 1.59754 1.45238 1.40997 1.84512 1.26192 1.47654 1.75904 0.91895 0.85137 0.87261 0.87247 0.85376 0.86454 0.92082 0.91296 0.91187 0.92072 0.92080 0.91106 0.91029 0.87782 0.89113 0.88310 0.88468 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.55 13.67 55.48 0.76 -24.79 16 2 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 3 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.40 -11.49 9.49 30.90 0.29 -11.20 16 8 H 0.09 2.43 5.21 -52.48 -0.27 2.15 16 9 O -0.14 -4.00 8.42 -16.66 -0.14 -4.14 16 10 C 0.19 4.70 6.62 -38.60 -0.26 4.44 16 11 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 12 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 13 C -0.23 -3.71 10.02 -39.61 -0.40 -4.10 16 14 C -0.06 -0.96 7.42 -39.20 -0.29 -1.25 16 15 C -0.22 -4.79 5.51 -104.81 -0.58 -5.37 16 16 C 0.57 12.32 7.13 -12.47 -0.09 12.23 16 17 O -0.50 -12.95 11.49 -12.16 -0.14 -13.09 16 18 N -0.62 -10.20 2.97 -166.18 -0.49 -10.69 16 19 C 0.08 1.02 5.02 -3.71 -0.02 1.00 16 20 C -0.14 -1.52 6.08 -26.62 -0.16 -1.68 16 21 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 22 C -0.14 -1.64 4.85 -26.39 -0.13 -1.77 16 23 C 0.16 2.23 3.04 -67.37 -0.20 2.03 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.10 -1.83 2.52 -26.73 -0.07 -1.90 16 26 C -0.12 -1.57 5.58 -27.88 -0.16 -1.72 16 27 C 0.46 7.41 8.33 36.01 0.30 7.71 16 28 O -0.48 -10.51 16.68 -18.75 -0.31 -10.83 16 29 O -0.53 -6.47 13.42 -39.23 -0.53 -7.00 16 30 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.75 5.50 -52.49 -0.29 1.46 16 35 H 0.12 1.58 3.52 -52.55 -0.18 1.40 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.68 6.65 -51.93 -0.35 0.34 16 43 H 0.10 2.16 6.25 -51.93 -0.32 1.84 16 44 H 0.09 2.04 7.04 -51.93 -0.37 1.68 16 45 H 0.10 1.08 6.31 -51.93 -0.33 0.75 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.41 3.46 9.10 45.56 0.41 3.87 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -37.47 374.47 -8.35 -45.82 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.35 Total: 11.72 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.76 Total: -8.56 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.27 Total: -35.48 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.12 Total: -35.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.47 -8.35 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.480 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds