Wall clock time and date at job start Wed Apr 1 2020 04:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00527 * 2 1 4 4 H 1.48493 * 109.47480 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46841 * 300.00271 * 3 2 1 6 6 H 1.48500 * 109.47098 * 59.99599 * 3 2 1 7 7 C 1.38697 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 180.02562 * 7 2 1 9 9 O 1.34819 * 120.00366 * 0.02562 * 7 2 1 10 10 C 1.35518 * 117.00286 * 174.94375 * 9 7 2 11 11 C 1.38829 * 120.16254 * 5.63059 * 10 9 7 12 12 C 1.38025 * 120.07266 * 180.02562 * 11 10 9 13 13 C 1.38568 * 120.40067 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32658 * 359.72449 * 13 12 11 15 15 C 1.39668 * 119.91162 * 0.55565 * 14 13 12 16 16 C 1.47538 * 120.19357 * 179.71961 * 15 14 13 17 17 O 1.21589 * 120.00048 * 143.85205 * 16 15 14 18 18 N 1.34775 * 119.99872 * 324.12865 * 16 15 14 19 19 C 1.46926 * 120.63358 * 4.43946 * 18 16 15 20 20 C 1.53189 * 108.77378 * 233.58488 * 19 18 16 21 21 C 1.53034 * 109.31329 * 305.36294 * 20 19 18 22 22 C 1.53038 * 109.54290 * 61.36520 * 21 20 19 23 23 C 1.46930 * 120.63072 * 184.15187 * 18 16 15 24 24 H 1.09000 * 109.59137 * 246.20190 * 23 18 16 25 25 C 1.53005 * 109.58477 * 6.63286 * 23 18 16 26 26 C 1.52995 * 109.46959 * 178.33166 * 25 23 18 27 27 C 1.50707 * 109.47158 * 184.76737 * 26 25 23 28 28 O 1.20829 * 119.99747 * 0.02562 * 27 26 25 29 29 O 1.34220 * 120.00176 * 179.97438 * 27 26 25 30 30 H 0.97006 * 119.99404 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.96610 * 0.04574 * 11 10 9 32 32 H 1.08000 * 119.79794 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.83890 * 180.02562 * 13 12 11 34 34 H 1.08000 * 120.04270 * 180.27866 * 14 13 12 35 35 H 1.08997 * 109.58136 * 353.37174 * 19 18 16 36 36 H 1.09000 * 109.59118 * 113.64916 * 19 18 16 37 37 H 1.09001 * 109.49958 * 65.31537 * 20 19 18 38 38 H 1.09005 * 109.49830 * 185.40806 * 20 19 18 39 39 H 1.09004 * 109.46171 * 181.39156 * 21 20 19 40 40 H 1.09002 * 109.45839 * 301.34145 * 21 20 19 41 41 H 1.09007 * 109.49375 * 58.58269 * 22 21 20 42 42 H 1.08994 * 109.50249 * 178.65181 * 22 21 20 43 43 H 1.08996 * 109.46685 * 298.32981 * 25 23 18 44 44 H 1.08996 * 109.47182 * 58.32795 * 25 23 18 45 45 H 1.09004 * 109.47442 * 304.76785 * 26 25 23 46 46 H 1.09004 * 109.47247 * 64.77075 * 26 25 23 47 47 H 0.96698 * 117.00087 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3345 -2.3688 0.0005 10 6 2.0685 -3.5030 -0.1053 11 6 3.4553 -3.4404 -0.0901 12 6 4.2011 -4.5968 -0.1986 13 6 3.5743 -5.8263 -0.3227 14 6 2.1985 -5.9082 -0.3335 15 6 1.4308 -4.7460 -0.2305 16 6 -0.0423 -4.8259 -0.2476 17 8 -0.7002 -4.0709 0.4420 18 7 -0.6587 -5.7394 -1.0235 19 6 0.1220 -6.7257 -1.7829 20 6 -0.2956 -6.6571 -3.2552 21 6 -1.8114 -6.8396 -3.3604 22 6 -2.5166 -5.7106 -2.6053 23 6 -2.1244 -5.7720 -1.1212 24 1 -2.4997 -6.6950 -0.6792 25 6 -2.7145 -4.5690 -0.3826 26 6 -4.2381 -4.5828 -0.5211 27 6 -4.8108 -3.3374 0.1052 28 8 -4.0755 -2.5223 0.6102 29 8 -6.1373 -3.1332 0.1013 30 1 -0.4849 0.8401 -0.0004 31 1 3.9512 -2.4859 0.0071 32 1 5.2797 -4.5430 -0.1858 33 1 4.1668 -6.7254 -0.4066 34 1 1.7148 -6.8694 -0.4260 35 1 1.1842 -6.4981 -1.6933 36 1 -0.0719 -7.7245 -1.3920 37 1 -0.0164 -5.6876 -3.6678 38 1 0.2057 -7.4483 -3.8128 39 1 -2.1081 -6.8159 -4.4090 40 1 -2.0927 -7.7986 -2.9253 41 1 -2.2164 -4.7500 -3.0240 42 1 -3.5960 -5.8277 -2.7008 43 1 -2.4451 -4.6225 0.6722 44 1 -2.3188 -3.6489 -0.8124 45 1 -4.5067 -4.6149 -1.5771 46 1 -4.6409 -5.4612 -0.0169 47 1 -6.4576 -2.3202 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:34 Heat of formation + Delta-G solvation = -125.120265 kcal Electronic energy + Delta-G solvation = -31963.002215 eV Core-core repulsion = 27690.603967 eV Total energy + Delta-G solvation = -4272.398247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89981 -41.19288 -40.33911 -38.20239 -38.13686 -37.16216 -35.35828 -34.36497 -33.78284 -31.97943 -30.78775 -30.53582 -27.51165 -27.20564 -25.56930 -24.36191 -23.74476 -22.73708 -21.75842 -21.50136 -20.40054 -19.88709 -19.04094 -18.57131 -17.76099 -17.59517 -17.24458 -16.83737 -16.51597 -16.25759 -16.04472 -15.72284 -15.63551 -15.39865 -15.20643 -14.87451 -14.63704 -14.37733 -14.32084 -14.09623 -13.83807 -13.58453 -13.54843 -13.28319 -13.03625 -12.98177 -12.62735 -12.56729 -12.50529 -12.37992 -12.13756 -12.12613 -11.84026 -11.69718 -11.60688 -11.51874 -11.39209 -11.17370 -10.85367 -9.98763 -9.66096 -9.40303 -9.01768 -8.46588 -6.18505 0.20469 0.70568 1.25184 1.27297 1.38443 1.47942 1.92404 2.10431 2.12533 2.28931 2.83189 3.17430 3.44051 3.63082 3.82736 3.88915 4.00381 4.04391 4.08203 4.15403 4.23026 4.27595 4.32411 4.36222 4.50887 4.53337 4.61155 4.64216 4.79836 4.82522 4.86826 4.96096 5.00582 5.05726 5.09639 5.14517 5.17519 5.24481 5.31511 5.45784 5.51051 5.54770 5.59441 5.64566 5.69854 5.89090 5.93688 6.17531 6.56961 6.92485 7.01599 7.49710 7.78451 8.73616 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007516 B = 0.005091 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.569943 B = 5498.729872 C = 8408.141185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.026 4.026 3 Si 1.022 2.978 4 H -0.243 1.243 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.422 4.422 8 H 0.106 0.894 9 O -0.204 6.204 10 C 0.146 3.854 11 C -0.257 4.257 12 C -0.046 4.046 13 C -0.196 4.196 14 C -0.047 4.047 15 C -0.238 4.238 16 C 0.550 3.450 17 O -0.558 6.558 18 N -0.609 5.609 19 C 0.071 3.929 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.134 4.134 23 C 0.152 3.848 24 H 0.108 0.892 25 C -0.091 4.091 26 C -0.109 4.109 27 C 0.468 3.532 28 O -0.559 6.559 29 O -0.510 6.510 30 H 0.268 0.732 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.031 0.969 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.132 0.868 46 H 0.143 0.857 47 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -19.699 -7.795 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.224 4.224 3 Si 0.840 3.160 4 H -0.166 1.166 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.498 4.498 8 H 0.124 0.876 9 O -0.107 6.107 10 C 0.092 3.908 11 C -0.276 4.276 12 C -0.064 4.064 13 C -0.214 4.214 14 C -0.064 4.064 15 C -0.243 4.243 16 C 0.340 3.660 17 O -0.437 6.437 18 N -0.343 5.343 19 C -0.049 4.049 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.172 4.172 23 C 0.050 3.950 24 H 0.125 0.875 25 C -0.129 4.129 26 C -0.147 4.147 27 C 0.312 3.688 28 O -0.449 6.449 29 O -0.324 6.324 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.150 0.850 46 H 0.161 0.839 47 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -3.664 -19.251 -7.462 20.969 hybrid contribution 0.014 2.574 0.649 2.655 sum -3.650 -16.677 -6.813 18.381 Atomic orbital electron populations 1.70356 1.08373 1.28309 1.47346 1.26781 0.96708 1.03214 0.95734 0.84512 0.78511 0.74510 0.78459 1.16580 1.19252 1.19631 1.21995 0.92549 0.81630 1.53642 0.87638 1.84094 1.35576 1.12409 1.78650 1.20023 0.91649 0.87427 0.91744 1.21279 0.92327 1.00932 1.13047 1.21408 1.00629 0.91301 0.93032 1.21217 0.93838 0.98402 1.07958 1.21636 0.94440 0.96258 0.94092 1.19350 0.93082 0.92894 1.18957 1.18588 0.87927 0.79673 0.79781 1.90930 1.65974 1.43004 1.43766 1.48035 1.06874 1.33077 1.46313 1.22899 0.98182 0.92142 0.91712 1.21955 0.97697 1.02072 0.95641 1.21510 0.93916 0.98488 1.00897 1.22196 1.02444 0.99226 0.93353 1.21454 0.78844 0.98134 0.96567 0.87451 1.21675 0.92153 0.97366 1.01721 1.21655 0.95300 0.93510 1.04190 1.24217 0.80096 0.88622 0.75847 1.90910 1.61637 1.47871 1.44480 1.84463 1.23899 1.48636 1.75359 0.92337 0.86255 0.82944 0.81509 0.80897 0.87325 0.87712 0.94735 0.87633 0.90410 0.88962 0.94971 0.87610 0.92198 0.96117 0.85010 0.83925 0.71738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -62.59 13.67 21.62 0.30 -62.30 16 2 C -0.03 -1.60 5.49 84.85 0.47 -1.14 16 3 Si 1.02 46.51 29.55 68.60 2.03 48.53 16 4 H -0.24 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.42 -26.59 9.49 67.93 0.64 -25.95 16 8 H 0.11 5.98 5.21 -2.91 -0.02 5.97 16 9 O -0.20 -13.49 8.42 -3.40 -0.03 -13.52 16 10 C 0.15 7.78 6.62 22.90 0.15 7.93 16 11 C -0.26 -11.38 9.16 22.36 0.20 -11.17 16 12 C -0.05 -1.46 10.03 22.30 0.22 -1.23 16 13 C -0.20 -5.27 10.02 22.25 0.22 -5.04 16 14 C -0.05 -1.44 7.42 22.52 0.17 -1.27 16 15 C -0.24 -10.69 5.51 -19.99 -0.11 -10.80 16 16 C 0.55 25.75 7.13 86.70 0.62 26.37 16 17 O -0.56 -32.92 11.49 12.69 0.15 -32.77 16 18 N -0.61 -20.13 2.97 -797.93 -2.37 -22.49 16 19 C 0.07 1.55 5.02 86.36 0.43 1.98 16 20 C -0.14 -2.54 6.08 30.67 0.19 -2.35 16 21 C -0.11 -1.71 5.88 30.62 0.18 -1.53 16 22 C -0.13 -2.92 4.85 30.82 0.15 -2.78 16 23 C 0.15 4.24 3.04 45.12 0.14 4.38 16 24 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 25 C -0.09 -3.47 2.52 30.59 0.08 -3.40 16 26 C -0.11 -2.87 5.58 29.85 0.17 -2.70 16 27 C 0.47 15.83 8.33 71.24 0.59 16.42 16 28 O -0.56 -27.25 16.68 21.96 0.37 -26.89 16 29 O -0.51 -12.32 13.42 -51.32 -0.69 -13.01 16 30 H 0.27 17.07 8.31 -92.70 -0.77 16.30 16 31 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.17 3.78 5.50 -2.91 -0.02 3.76 16 35 H 0.11 2.52 3.52 -2.97 -0.01 2.51 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.11 1.59 6.65 -2.39 -0.02 1.57 16 43 H 0.06 2.79 6.25 -2.39 -0.01 2.77 16 44 H 0.02 1.05 7.04 -2.39 -0.02 1.03 16 45 H 0.13 2.61 6.31 -2.39 -0.02 2.60 16 46 H 0.14 2.52 8.14 -2.38 -0.02 2.50 16 47 H 0.42 7.32 9.10 -74.06 -0.67 6.65 16 Total: -1.00 -104.70 374.47 4.62 -100.09 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.35 Total: 34.64 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.51 Total: -12.29 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.07 Total: -84.79 kcal Atomic # 8 Polarization: -85.98 SS G_CDS: -0.21 Total: -86.18 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -104.70 4.62 -100.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.035 kcal (2) G-P(sol) polarization free energy of solvation -104.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds