Wall clock time and date at job start Wed Apr 1 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99663 * 3 2 1 5 5 H 1.48498 * 109.47463 * 29.99418 * 3 2 1 6 6 H 1.48505 * 109.47341 * 149.99996 * 3 2 1 7 7 C 1.38698 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99578 * 359.97438 * 7 2 1 9 9 O 1.34804 * 120.00196 * 180.02562 * 7 2 1 10 10 C 1.35522 * 117.00432 * 184.79639 * 9 7 2 11 11 C 1.38840 * 120.15692 * 5.56353 * 10 9 7 12 12 C 1.38024 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.40199 * 0.02562 * 12 11 10 14 14 C 1.37830 * 120.32226 * 359.78270 * 13 12 11 15 15 C 1.39663 * 119.91950 * 0.44644 * 14 13 12 16 16 C 1.47538 * 120.19294 * 179.81223 * 15 14 13 17 17 O 1.21596 * 119.99268 * 219.61435 * 16 15 14 18 18 N 1.34774 * 120.00370 * 39.61681 * 16 15 14 19 19 C 1.46924 * 120.62960 * 5.27243 * 18 16 15 20 20 C 1.53186 * 108.77845 * 126.36893 * 19 18 16 21 21 C 1.53043 * 109.31212 * 54.63171 * 20 19 18 22 22 C 1.53036 * 109.53722 * 298.63730 * 21 20 19 23 23 C 1.46925 * 120.63163 * 185.24348 * 18 16 15 24 24 H 1.09002 * 109.69820 * 113.77407 * 23 18 16 25 25 C 1.52997 * 109.58751 * 353.42376 * 23 18 16 26 26 C 1.52997 * 109.47178 * 181.33873 * 25 23 18 27 27 C 1.50706 * 109.46972 * 185.05646 * 26 25 23 28 28 O 1.20820 * 120.00286 * 0.02562 * 27 26 25 29 29 O 1.34227 * 119.99808 * 179.97438 * 27 26 25 30 30 H 0.97001 * 120.00159 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.96224 * 359.97390 * 11 10 9 32 32 H 1.08003 * 119.79780 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.83725 * 180.02562 * 13 12 11 34 34 H 1.08007 * 120.03438 * 180.26103 * 14 13 12 35 35 H 1.09000 * 109.58665 * 6.57896 * 19 18 16 36 36 H 1.08997 * 109.58705 * 246.15980 * 19 18 16 37 37 H 1.09008 * 109.49644 * 294.68082 * 20 19 18 38 38 H 1.09005 * 109.49810 * 174.58671 * 20 19 18 39 39 H 1.08997 * 109.45733 * 58.65978 * 21 20 19 40 40 H 1.09005 * 109.45496 * 178.62846 * 21 20 19 41 41 H 1.09005 * 109.49656 * 181.31586 * 22 21 20 42 42 H 1.08999 * 109.49657 * 301.40913 * 22 21 20 43 43 H 1.09001 * 109.47303 * 301.33998 * 25 23 18 44 44 H 1.09001 * 109.47399 * 61.33808 * 25 23 18 45 45 H 1.08999 * 109.47415 * 305.05488 * 26 25 23 46 46 H 1.08995 * 109.47007 * 65.06006 * 26 25 23 47 47 H 0.96700 * 117.00257 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4686 -2.1365 0.0014 9 8 3.3567 -1.2011 0.0011 10 6 3.9721 -2.4044 -0.0994 11 6 3.2243 -3.5546 -0.3127 12 6 3.8530 -4.7791 -0.4153 13 6 5.2313 -4.8711 -0.3061 14 6 5.9899 -3.7393 -0.0982 15 6 5.3674 -2.4940 0.0125 16 6 6.1733 -1.2791 0.2392 17 8 5.7733 -0.4172 0.9979 18 7 7.3526 -1.1246 -0.3947 19 6 7.7953 -2.1000 -1.4003 20 6 8.1348 -1.3544 -2.6946 21 6 9.1561 -0.2553 -2.3926 22 6 8.5543 0.7446 -1.4027 23 6 8.2196 0.0227 -0.0937 24 1 9.1390 -0.3251 0.3772 25 6 7.4915 0.9823 0.8496 26 6 8.3836 2.1921 1.1347 27 6 7.7195 3.0756 2.1592 28 8 6.6434 2.7689 2.6149 29 8 8.3241 4.2028 2.5662 30 1 -0.4850 0.8400 -0.0004 31 1 2.1497 -3.4911 -0.3985 32 1 3.2670 -5.6710 -0.5817 33 1 5.7138 -5.8338 -0.3882 34 1 7.0643 -3.8158 -0.0180 35 1 6.9966 -2.8170 -1.5903 36 1 8.6799 -2.6232 -1.0372 37 1 7.2294 -0.9069 -3.1049 38 1 8.5555 -2.0533 -3.4176 39 1 10.0516 -0.7009 -1.9595 40 1 9.4177 0.2610 -3.3163 41 1 9.2736 1.5396 -1.2060 42 1 7.6451 1.1723 -1.8251 43 1 6.5644 1.3162 0.3837 44 1 7.2642 0.4701 1.7846 45 1 9.3458 1.8519 1.5174 46 1 8.5371 2.7552 0.2142 47 1 7.8596 4.7369 3.2251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:39 Heat of formation + Delta-G solvation = -112.486868 kcal Electronic energy + Delta-G solvation = -32037.869341 eV Core-core repulsion = 27766.018919 eV Total energy + Delta-G solvation = -4271.850422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64210 -40.01526 -38.94842 -36.92439 -36.63551 -36.12155 -34.23097 -32.73213 -32.43696 -30.62159 -29.74751 -29.23452 -26.20884 -25.30490 -24.46895 -23.19975 -22.32467 -21.31014 -20.76699 -20.42522 -19.17564 -18.02002 -17.92407 -17.16761 -16.53959 -16.35975 -16.17540 -15.60317 -15.09354 -14.87047 -14.61810 -14.51290 -14.18117 -14.02536 -13.75251 -13.73185 -13.46399 -13.23078 -13.05445 -12.77385 -12.52955 -12.37489 -12.26565 -12.16530 -11.85945 -11.58077 -11.45578 -11.23798 -11.16009 -11.03600 -10.89890 -10.77681 -10.66472 -10.57965 -10.48922 -10.42804 -10.05608 -9.52934 -8.89507 -8.61377 -8.31670 -8.21969 -7.47657 -6.45726 -4.10851 1.65583 2.17319 2.31154 2.98358 3.27949 3.30108 3.33807 3.46589 3.65672 4.33801 4.41232 4.62888 4.70563 4.75371 4.79396 4.95162 4.99211 5.07811 5.10191 5.14778 5.24200 5.25368 5.38784 5.44237 5.45583 5.62099 5.64757 5.69920 5.72771 5.79358 5.82796 5.93912 5.99320 6.00375 6.08558 6.23707 6.38039 6.42767 6.52403 6.54063 6.64923 6.87179 6.96034 7.03614 7.16477 7.48556 7.66933 7.81705 7.96348 7.96924 8.81039 8.89826 9.51077 10.59921 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007734 B = 0.005387 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.587212 B = 5196.662974 C = 7664.316050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.234 1.234 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.181 6.181 10 C 0.200 3.800 11 C -0.225 4.225 12 C -0.054 4.054 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.221 4.221 16 C 0.567 3.433 17 O -0.504 6.504 18 N -0.615 5.615 19 C 0.101 3.899 20 C -0.138 4.138 21 C -0.117 4.117 22 C -0.138 4.138 23 C 0.154 3.846 24 H 0.069 0.931 25 C -0.102 4.102 26 C -0.121 4.121 27 C 0.469 3.531 28 O -0.495 6.495 29 O -0.527 6.527 30 H 0.281 0.719 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.936 -0.906 -3.509 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.157 1.157 7 C -0.467 4.467 8 H 0.126 0.874 9 O -0.082 6.082 10 C 0.143 3.857 11 C -0.244 4.244 12 C -0.073 4.073 13 C -0.238 4.238 14 C -0.066 4.066 15 C -0.225 4.225 16 C 0.358 3.642 17 O -0.379 6.379 18 N -0.351 5.351 19 C -0.022 4.022 20 C -0.176 4.176 21 C -0.154 4.154 22 C -0.177 4.177 23 C 0.051 3.949 24 H 0.086 0.914 25 C -0.139 4.139 26 C -0.159 4.159 27 C 0.310 3.690 28 O -0.380 6.380 29 O -0.339 6.339 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 20.445 -0.370 -3.213 20.699 hybrid contribution -0.232 0.938 0.262 1.001 sum 20.213 0.568 -2.951 20.435 Atomic orbital electron populations 1.69625 1.05713 1.28833 1.46475 1.24444 0.94951 0.99048 0.94824 0.86372 0.82240 0.81016 0.79091 1.20187 1.20823 1.15698 1.20831 0.76813 0.96700 1.52315 0.87449 1.83665 1.22504 1.25137 1.76929 1.18972 0.89995 0.85892 0.90857 1.21276 1.01350 0.92009 1.09769 1.20951 0.94392 0.96610 0.95311 1.20550 0.93977 0.97534 1.11782 1.20869 0.98563 0.91110 0.96030 1.18827 0.91105 0.93631 1.18951 1.18300 0.79630 0.86340 0.79952 1.90915 1.68921 1.41744 1.36348 1.47973 1.20045 1.25553 1.41512 1.22043 1.00709 0.91747 0.87693 1.21956 0.99914 0.98269 0.97489 1.21493 0.98134 0.96731 0.99081 1.22120 1.01584 0.98180 0.95775 1.21126 0.92770 0.86233 0.94770 0.91356 1.22120 0.97180 0.92634 1.01989 1.21635 1.00807 0.96552 0.96894 1.23598 0.84009 0.79644 0.81722 1.90843 1.21411 1.71468 1.54297 1.84523 1.54094 1.35979 1.59340 0.90871 0.84474 0.86892 0.87001 0.86273 0.88000 0.91918 0.91280 0.90937 0.91942 0.91911 0.90878 0.91150 0.89125 0.88376 0.88212 0.88096 0.73527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.63 13.96 55.48 0.77 -24.85 16 2 C 0.07 2.11 5.49 -17.52 -0.10 2.02 16 3 Si 0.89 23.33 28.62 -169.99 -4.86 18.46 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.23 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.39 -11.28 9.91 30.90 0.31 -10.97 16 8 H 0.11 3.09 5.51 -52.48 -0.29 2.80 16 9 O -0.18 -4.98 7.36 -14.97 -0.11 -5.09 16 10 C 0.20 4.68 6.63 -38.60 -0.26 4.43 16 11 C -0.22 -4.74 9.13 -39.44 -0.36 -5.10 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 13 C -0.22 -3.35 10.02 -39.61 -0.40 -3.75 16 14 C -0.05 -0.75 7.36 -39.20 -0.29 -1.04 16 15 C -0.22 -4.44 5.17 -104.81 -0.54 -4.98 16 16 C 0.57 11.36 7.07 -12.47 -0.09 11.28 16 17 O -0.50 -12.11 11.54 -10.51 -0.12 -12.23 16 18 N -0.61 -9.25 2.97 -166.45 -0.49 -9.74 16 19 C 0.10 1.17 4.87 -3.71 -0.02 1.15 16 20 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 21 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 22 C -0.14 -1.44 4.83 -26.62 -0.13 -1.56 16 23 C 0.15 1.95 3.03 -67.61 -0.20 1.75 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 C -0.10 -1.58 2.50 -26.73 -0.07 -1.65 16 26 C -0.12 -1.38 5.30 -27.88 -0.15 -1.53 16 27 C 0.47 6.57 8.33 36.01 0.30 6.87 16 28 O -0.49 -9.53 16.68 -18.75 -0.31 -9.84 16 29 O -0.53 -5.56 13.42 -39.25 -0.53 -6.08 16 30 H 0.28 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.14 3.02 5.70 -52.49 -0.30 2.72 16 32 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.53 6.48 -52.48 -0.34 1.19 16 35 H 0.10 1.29 4.66 -51.93 -0.24 1.05 16 36 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.59 6.87 -51.93 -0.36 0.23 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.79 6.94 -51.93 -0.36 1.43 16 44 H 0.10 1.83 6.36 -51.93 -0.33 1.50 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.94 6.84 -51.93 -0.36 0.59 16 47 H 0.41 2.78 9.10 45.56 0.41 3.20 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -36.04 375.49 -8.22 -44.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.52 Total: 6.60 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.70 Total: -7.14 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.28 Total: -34.59 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.07 Total: -33.24 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.86 Total: 18.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -8.22 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.230 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds