Wall clock time and date at job start Wed Apr 1 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47088 * 269.99995 * 3 2 1 5 5 H 1.48498 * 109.46984 * 29.99952 * 3 2 1 6 6 H 1.48493 * 109.46776 * 149.99679 * 3 2 1 7 7 C 1.37878 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99813 * 184.94099 * 7 2 1 9 9 C 1.50700 * 120.00215 * 4.94191 * 7 2 1 10 10 H 1.08999 * 109.47069 * 329.58626 * 9 7 2 11 11 C 1.53000 * 109.47339 * 209.58076 * 9 7 2 12 12 C 1.50706 * 109.46524 * 64.99969 * 11 9 7 13 13 O 1.21274 * 120.00291 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99602 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99778 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46701 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.54403 * 307.61714 * 16 15 14 18 18 C 1.54809 * 110.48988 * 70.23576 * 16 15 14 19 19 C 1.54991 * 102.09663 * 139.55195 * 18 16 15 20 20 O 1.44727 * 103.51806 * 322.94603 * 19 18 16 21 21 C 1.43741 * 106.79043 * 40.07554 * 20 19 18 22 22 H 1.08999 * 109.87951 * 92.95512 * 21 20 19 23 23 C 1.50701 * 109.87993 * 213.95846 * 21 20 19 24 24 O 1.20824 * 120.00392 * 3.29382 * 23 21 20 25 25 O 1.34227 * 119.99959 * 183.28847 * 23 21 20 26 26 C 1.50699 * 109.47054 * 89.58252 * 9 7 2 27 27 C 1.38240 * 120.00156 * 56.76934 * 26 9 7 28 28 C 1.38229 * 120.00144 * 179.78887 * 27 26 9 29 29 C 1.38235 * 119.99943 * 0.43772 * 28 27 26 30 30 C 1.38232 * 119.99978 * 359.82127 * 29 28 27 31 31 C 1.38229 * 120.00116 * 359.96956 * 30 29 28 32 32 H 0.96995 * 120.00526 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.46976 * 305.00483 * 11 9 7 34 34 H 1.08999 * 109.47153 * 184.99771 * 11 9 7 35 35 H 0.97002 * 119.99793 * 0.02562 * 14 12 11 36 36 H 1.08993 * 109.47137 * 60.00337 * 15 14 12 37 37 H 1.08999 * 109.47004 * 299.99618 * 15 14 12 38 38 H 1.09000 * 110.90882 * 257.75459 * 18 16 15 39 39 H 1.09004 * 110.90671 * 21.31939 * 18 16 15 40 40 H 1.09004 * 110.61925 * 81.47728 * 19 18 16 41 41 H 1.08994 * 110.62539 * 204.47638 * 19 18 16 42 42 H 0.96705 * 117.00263 * 179.97438 * 25 23 21 43 43 H 1.08002 * 119.99569 * 359.97438 * 27 26 9 44 44 H 1.08005 * 120.00356 * 180.27596 * 28 27 26 45 45 H 1.08007 * 120.00075 * 179.82973 * 29 28 27 46 46 H 1.07999 * 119.99833 * 179.97438 * 30 29 28 47 47 H 1.07997 * 119.99946 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 0.0811 9 6 1.2553 -2.4968 -0.1113 10 1 0.2697 -2.3892 0.3417 11 6 2.0330 -3.5964 0.6146 12 6 2.0798 -3.2887 2.0892 13 8 1.5435 -2.2887 2.5173 14 7 2.7176 -4.1249 2.9321 15 6 2.7626 -3.8260 4.3656 16 6 3.5404 -4.9256 5.0915 17 1 3.1405 -5.9075 4.8388 18 6 5.0460 -4.8468 4.7398 19 6 5.7146 -5.1315 6.1088 20 8 4.8446 -4.4665 7.0551 21 6 3.4963 -4.7012 6.6155 22 1 3.0943 -5.5860 7.1090 23 6 2.6382 -3.5036 6.9325 24 8 3.1343 -2.5182 7.4251 25 8 1.3226 -3.5316 6.6674 26 6 1.1026 -2.8653 -1.5646 27 6 2.2212 -2.9908 -2.3671 28 6 2.0814 -3.3330 -3.6990 29 6 0.8225 -3.5410 -4.2307 30 6 -0.2964 -3.4103 -3.4296 31 6 -0.1564 -3.0723 -2.0966 32 1 -0.4851 0.8400 0.0004 33 1 3.0482 -3.6438 0.2209 34 1 1.5378 -4.5549 0.4590 35 1 3.1468 -4.9245 2.5896 36 1 1.7473 -3.7795 4.7591 37 1 3.2571 -2.8672 4.5215 38 1 5.3152 -5.6096 4.0093 39 1 5.3092 -3.8532 4.3770 40 1 5.7471 -6.2033 6.3046 41 1 6.7164 -4.7035 6.1432 42 1 0.8132 -2.7399 6.8885 43 1 3.2045 -2.8243 -1.9526 44 1 2.9556 -3.4354 -4.3250 45 1 0.7131 -3.8057 -5.2721 46 1 -1.2800 -3.5724 -3.8451 47 1 -1.0305 -2.9706 -1.4706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:49 Heat of formation + Delta-G solvation = -145.498544 kcal Electronic energy + Delta-G solvation = -30690.770715 eV Core-core repulsion = 26417.488799 eV Total energy + Delta-G solvation = -4273.281916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14099 -39.23856 -38.88775 -38.15243 -36.27502 -35.05555 -33.90139 -32.17795 -31.39367 -30.56325 -30.01762 -28.91903 -26.59106 -25.10664 -23.91952 -22.68529 -22.12479 -21.62305 -20.63721 -20.22609 -19.22253 -18.15812 -17.45798 -17.08697 -16.58949 -16.19348 -15.96596 -15.69804 -15.52513 -15.04300 -14.80569 -14.67243 -14.38090 -14.10657 -13.83740 -13.70409 -13.36876 -12.97803 -12.75840 -12.53312 -12.26383 -12.18014 -12.06317 -11.90907 -11.70182 -11.65359 -11.59051 -11.29921 -11.07264 -10.86808 -10.72024 -10.68752 -10.56173 -10.26874 -10.11382 -10.03583 -9.43397 -9.11631 -8.84731 -8.57685 -8.31805 -8.05532 -7.62661 -5.91912 -3.91149 2.00712 2.27880 2.33506 2.45947 3.38121 3.44138 3.45023 3.46983 3.55739 3.65499 4.14904 4.34661 4.44667 4.52682 4.74087 4.75718 4.76366 4.94602 5.02420 5.16536 5.34483 5.39997 5.41174 5.64554 5.65716 5.71661 5.72248 5.80732 5.83517 6.01832 6.08863 6.18798 6.28209 6.29426 6.37268 6.40459 6.52997 6.78949 6.86263 6.90333 7.03548 7.30191 7.44485 7.52925 7.74248 7.88741 7.94156 8.03499 8.09004 8.39228 9.07032 9.09592 9.69993 11.18163 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002930 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.506648 B = 9552.448945 C =10609.736242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.077 3.923 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.050 0.950 9 C 0.078 3.922 10 H 0.073 0.927 11 C -0.120 4.120 12 C 0.511 3.489 13 O -0.491 6.491 14 N -0.748 5.748 15 C 0.111 3.889 16 C -0.122 4.122 17 H 0.106 0.894 18 C -0.153 4.153 19 C 0.046 3.954 20 O -0.348 6.348 21 C 0.096 3.904 22 H 0.112 0.888 23 C 0.478 3.522 24 O -0.492 6.492 25 O -0.509 6.509 26 C -0.022 4.022 27 C -0.115 4.115 28 C -0.132 4.132 29 C -0.155 4.155 30 C -0.128 4.128 31 C -0.119 4.119 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.417 0.583 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -16.149 7.318 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.091 0.909 11 C -0.161 4.161 12 C 0.297 3.703 13 O -0.361 6.361 14 N -0.404 5.404 15 C -0.013 4.013 16 C -0.141 4.141 17 H 0.125 0.875 18 C -0.191 4.191 19 C -0.030 4.030 20 O -0.267 6.267 21 C 0.036 3.964 22 H 0.130 0.870 23 C 0.318 3.682 24 O -0.378 6.378 25 O -0.323 6.323 26 C -0.023 4.023 27 C -0.133 4.133 28 C -0.151 4.151 29 C -0.174 4.174 30 C -0.147 4.147 31 C -0.137 4.137 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.278 0.722 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.256 -15.165 7.879 18.198 hybrid contribution 0.368 1.147 -0.294 1.240 sum 6.624 -14.017 7.585 17.260 Atomic orbital electron populations 1.69897 1.05862 1.26332 1.49655 1.24807 0.94664 0.98806 0.94335 0.86722 0.80081 0.84192 0.77740 1.20864 1.21331 1.20091 1.20667 0.92315 0.89649 1.50178 0.93213 1.17835 0.98805 0.91450 0.85957 0.90907 1.21762 1.02442 1.00726 0.91142 1.20928 0.77790 0.82703 0.88859 1.90776 1.42553 1.24988 1.77827 1.46125 1.59844 1.27960 1.06496 1.21685 1.01320 0.96243 0.82094 1.22765 0.97357 1.01732 0.92226 0.87539 1.23320 0.93098 1.04483 0.98160 1.23762 0.94943 0.97458 0.86869 1.89078 1.13385 1.75534 1.48714 1.22124 0.84720 0.93971 0.95576 0.87032 1.23010 0.81430 0.89000 0.74764 1.90759 1.73860 1.33924 1.39266 1.84501 1.21294 1.48163 1.78362 1.20764 0.91720 0.90535 0.99279 1.20952 0.99013 1.00135 0.93178 1.20979 0.96540 1.01836 0.95708 1.20799 0.93118 1.04717 0.98722 1.20986 0.97582 1.01531 0.94563 1.21101 0.97746 1.00085 0.94805 0.93163 0.90579 0.91628 0.77556 0.89197 0.91911 0.89053 0.89384 0.91265 0.88064 0.72212 0.86880 0.87674 0.87812 0.87639 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 12.85 55.43 0.71 -25.20 16 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.88 22.38 29.54 -169.99 -5.02 17.35 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.49 -13.12 6.38 -34.44 -0.22 -13.34 16 8 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 9 C 0.08 1.85 1.68 -92.92 -0.16 1.69 16 10 H 0.07 1.98 6.95 -51.93 -0.36 1.62 16 11 C -0.12 -2.24 4.95 -27.88 -0.14 -2.38 16 12 C 0.51 9.85 7.58 -10.98 -0.08 9.77 16 13 O -0.49 -12.15 14.98 5.56 0.08 -12.07 16 14 N -0.75 -10.31 5.45 -60.29 -0.33 -10.64 16 15 C 0.11 1.45 3.83 -4.04 -0.02 1.44 16 16 C -0.12 -1.07 3.07 -89.09 -0.27 -1.34 16 17 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 18 C -0.15 -1.19 6.56 -24.73 -0.16 -1.35 16 19 C 0.05 0.34 7.72 38.21 0.30 0.64 16 20 O -0.35 -3.96 10.76 -54.84 -0.59 -4.55 16 21 C 0.10 0.94 3.94 -27.30 -0.11 0.83 16 22 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 23 C 0.48 5.97 6.11 36.01 0.22 6.19 16 24 O -0.49 -8.13 17.28 -25.38 -0.44 -8.57 16 25 O -0.51 -5.27 11.09 -39.25 -0.44 -5.71 16 26 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 27 C -0.11 -2.27 8.86 -39.58 -0.35 -2.63 16 28 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 29 C -0.16 -2.67 10.05 -39.58 -0.40 -3.07 16 30 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 31 C -0.12 -2.49 9.67 -39.59 -0.38 -2.87 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.30 7.76 -51.93 -0.40 0.90 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.39 3.96 8.44 -40.82 -0.34 3.62 16 36 H 0.09 1.27 5.47 -51.93 -0.28 0.98 16 37 H 0.06 1.02 7.70 -51.93 -0.40 0.62 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.87 7.77 -51.93 -0.40 0.47 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.42 3.10 9.10 45.56 0.41 3.52 16 43 H 0.11 2.15 7.75 -52.49 -0.41 1.75 16 44 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 47 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -36.84 392.05 -9.23 -46.07 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.96 Total: 8.19 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.16 Total: -10.79 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.38 Total: -35.84 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.38 Total: -30.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.84 -9.23 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.429 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds