Wall clock time and date at job start Wed Apr 1 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47088 * 269.99995 * 3 2 1 5 5 H 1.48498 * 109.46984 * 29.99952 * 3 2 1 6 6 H 1.48493 * 109.46776 * 149.99679 * 3 2 1 7 7 C 1.37878 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99813 * 184.94099 * 7 2 1 9 9 C 1.50700 * 120.00215 * 4.94191 * 7 2 1 10 10 H 1.08999 * 109.47069 * 329.58626 * 9 7 2 11 11 C 1.53000 * 109.47339 * 209.58076 * 9 7 2 12 12 C 1.50706 * 109.46524 * 64.99969 * 11 9 7 13 13 O 1.21274 * 120.00291 * 0.02562 * 12 11 9 14 14 N 1.34780 * 119.99602 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99778 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46701 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.54403 * 307.61714 * 16 15 14 18 18 C 1.54809 * 110.48988 * 70.23576 * 16 15 14 19 19 C 1.54991 * 102.09663 * 139.55195 * 18 16 15 20 20 O 1.44727 * 103.51806 * 322.94603 * 19 18 16 21 21 C 1.43741 * 106.79043 * 40.07554 * 20 19 18 22 22 H 1.08999 * 109.87951 * 92.95512 * 21 20 19 23 23 C 1.50701 * 109.87993 * 213.95846 * 21 20 19 24 24 O 1.20824 * 120.00392 * 3.29382 * 23 21 20 25 25 O 1.34227 * 119.99959 * 183.28847 * 23 21 20 26 26 C 1.50699 * 109.47054 * 89.58252 * 9 7 2 27 27 C 1.38240 * 120.00156 * 56.76934 * 26 9 7 28 28 C 1.38229 * 120.00144 * 179.78887 * 27 26 9 29 29 C 1.38235 * 119.99943 * 0.43772 * 28 27 26 30 30 C 1.38232 * 119.99978 * 359.82127 * 29 28 27 31 31 C 1.38229 * 120.00116 * 359.96956 * 30 29 28 32 32 H 0.96995 * 120.00526 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.46976 * 305.00483 * 11 9 7 34 34 H 1.08999 * 109.47153 * 184.99771 * 11 9 7 35 35 H 0.97002 * 119.99793 * 0.02562 * 14 12 11 36 36 H 1.08993 * 109.47137 * 60.00337 * 15 14 12 37 37 H 1.08999 * 109.47004 * 299.99618 * 15 14 12 38 38 H 1.09000 * 110.90882 * 257.75459 * 18 16 15 39 39 H 1.09004 * 110.90671 * 21.31939 * 18 16 15 40 40 H 1.09004 * 110.61925 * 81.47728 * 19 18 16 41 41 H 1.08994 * 110.62539 * 204.47638 * 19 18 16 42 42 H 0.96705 * 117.00263 * 179.97438 * 25 23 21 43 43 H 1.08002 * 119.99569 * 359.97438 * 27 26 9 44 44 H 1.08005 * 120.00356 * 180.27596 * 28 27 26 45 45 H 1.08007 * 120.00075 * 179.82973 * 29 28 27 46 46 H 1.07999 * 119.99833 * 179.97438 * 30 29 28 47 47 H 1.07997 * 119.99946 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 0.0811 9 6 1.2553 -2.4968 -0.1113 10 1 0.2697 -2.3892 0.3417 11 6 2.0330 -3.5964 0.6146 12 6 2.0798 -3.2887 2.0892 13 8 1.5435 -2.2887 2.5173 14 7 2.7176 -4.1249 2.9321 15 6 2.7626 -3.8260 4.3656 16 6 3.5404 -4.9256 5.0915 17 1 3.1405 -5.9075 4.8388 18 6 5.0460 -4.8468 4.7398 19 6 5.7146 -5.1315 6.1088 20 8 4.8446 -4.4665 7.0551 21 6 3.4963 -4.7012 6.6155 22 1 3.0943 -5.5860 7.1090 23 6 2.6382 -3.5036 6.9325 24 8 3.1343 -2.5182 7.4251 25 8 1.3226 -3.5316 6.6674 26 6 1.1026 -2.8653 -1.5646 27 6 2.2212 -2.9908 -2.3671 28 6 2.0814 -3.3330 -3.6990 29 6 0.8225 -3.5410 -4.2307 30 6 -0.2964 -3.4103 -3.4296 31 6 -0.1564 -3.0723 -2.0966 32 1 -0.4851 0.8400 0.0004 33 1 3.0482 -3.6438 0.2209 34 1 1.5378 -4.5549 0.4590 35 1 3.1468 -4.9245 2.5896 36 1 1.7473 -3.7795 4.7591 37 1 3.2571 -2.8672 4.5215 38 1 5.3152 -5.6096 4.0093 39 1 5.3092 -3.8532 4.3770 40 1 5.7471 -6.2033 6.3046 41 1 6.7164 -4.7035 6.1432 42 1 0.8132 -2.7399 6.8885 43 1 3.2045 -2.8243 -1.9526 44 1 2.9556 -3.4354 -4.3250 45 1 0.7131 -3.8057 -5.2721 46 1 -1.2800 -3.5724 -3.8451 47 1 -1.0305 -2.9706 -1.4706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:48 Heat of formation + Delta-G solvation = -171.891858 kcal Electronic energy + Delta-G solvation = -30691.915215 eV Core-core repulsion = 26417.488799 eV Total energy + Delta-G solvation = -4274.426416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03854 -40.60954 -39.93461 -39.59118 -37.30369 -36.29501 -35.62949 -33.52437 -33.05017 -31.48526 -31.27229 -30.36398 -28.04442 -26.67586 -24.82921 -24.23057 -23.11580 -22.86098 -21.71009 -21.54002 -20.77269 -19.12693 -18.54669 -18.35202 -18.09844 -17.57910 -17.07248 -16.87833 -16.60721 -16.32946 -16.16881 -15.95244 -15.64622 -15.48235 -15.35555 -14.94499 -14.45700 -14.24951 -14.18526 -13.95311 -13.69960 -13.61555 -13.41396 -13.15826 -12.90765 -12.85224 -12.74983 -12.55016 -12.48371 -12.39168 -12.16357 -11.94915 -11.82262 -11.66278 -11.56388 -11.28754 -10.97597 -10.85693 -10.58798 -10.37203 -9.90880 -9.52638 -9.18114 -8.04321 -6.06178 0.79521 0.85472 1.03877 1.33381 1.35848 1.42258 1.68388 2.01265 2.30430 2.44442 2.90467 3.19328 3.34721 3.39822 3.56264 3.75409 4.07166 4.11621 4.20081 4.25358 4.27732 4.29111 4.37689 4.43130 4.47786 4.57702 4.66714 4.76293 4.76537 4.81267 4.86515 4.94295 4.96161 5.02168 5.11251 5.25860 5.39932 5.47828 5.53536 5.60673 5.68053 5.68519 5.79202 5.85512 5.97929 6.18980 6.43232 6.47940 6.82117 6.83673 7.02100 7.55639 7.64412 9.05151 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002930 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.506648 B = 9552.448945 C =10609.736242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.045 0.955 9 C 0.080 3.920 10 H 0.024 0.976 11 C -0.114 4.114 12 C 0.507 3.493 13 O -0.558 6.558 14 N -0.720 5.720 15 C 0.112 3.888 16 C -0.109 4.109 17 H 0.150 0.850 18 C -0.151 4.151 19 C 0.043 3.957 20 O -0.383 6.383 21 C 0.096 3.904 22 H 0.152 0.848 23 C 0.473 3.527 24 O -0.545 6.545 25 O -0.504 6.504 26 C -0.045 4.045 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.148 4.148 30 C -0.129 4.129 31 C -0.144 4.144 32 H 0.252 0.748 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.426 0.574 43 H 0.117 0.883 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 -19.756 5.332 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.061 3.939 10 H 0.042 0.958 11 C -0.154 4.154 12 C 0.295 3.705 13 O -0.434 6.434 14 N -0.376 5.376 15 C -0.012 4.012 16 C -0.128 4.128 17 H 0.167 0.833 18 C -0.189 4.189 19 C -0.032 4.032 20 O -0.302 6.302 21 C 0.037 3.963 22 H 0.170 0.830 23 C 0.316 3.684 24 O -0.435 6.435 25 O -0.319 6.319 26 C -0.046 4.046 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.165 4.165 30 C -0.147 4.147 31 C -0.162 4.162 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.252 0.748 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.289 0.711 43 H 0.135 0.865 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.170 -18.847 5.879 21.366 hybrid contribution -0.214 2.172 0.288 2.201 sum 7.956 -16.675 6.167 19.478 Atomic orbital electron populations 1.70041 1.06984 1.26203 1.52367 1.25462 0.95307 1.01590 0.95314 0.85994 0.78866 0.81407 0.77992 1.19762 1.21966 1.20035 1.20978 0.92089 0.91135 1.47709 0.93723 1.17621 0.96458 0.91937 0.87876 0.95771 1.21650 1.03143 1.00333 0.90267 1.21132 0.77345 0.82326 0.89711 1.90760 1.45718 1.28051 1.78879 1.45757 1.57886 1.27533 1.06435 1.21669 1.01195 0.96554 0.81776 1.22803 0.97569 1.01570 0.90870 0.83265 1.23346 0.92158 1.04006 0.99364 1.24017 0.94358 0.99171 0.85629 1.89058 1.14399 1.76646 1.50107 1.22449 0.83986 0.93496 0.96412 0.83047 1.23868 0.81844 0.89353 0.73302 1.90730 1.74749 1.36076 1.41918 1.84486 1.20840 1.48737 1.77811 1.20553 0.92982 0.92870 0.98184 1.21049 0.98332 1.00747 0.94292 1.21377 0.98230 0.99930 0.94915 1.21265 0.92285 1.02658 1.00330 1.21280 0.99618 1.00448 0.93348 1.21110 0.96901 1.01934 0.96275 0.93856 0.88412 0.88558 0.74751 0.90261 0.95885 0.85509 0.92421 0.87772 0.87827 0.71143 0.86506 0.84125 0.83929 0.85125 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.89 12.85 21.45 0.28 -56.61 16 2 C 0.02 1.28 5.45 84.65 0.46 1.74 16 3 Si 0.93 47.37 29.54 68.60 2.03 49.39 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 6 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.48 -26.54 6.38 25.60 0.16 -26.37 16 8 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 9 C 0.08 3.90 1.68 -12.29 -0.02 3.88 16 10 H 0.02 1.40 6.95 -2.39 -0.02 1.38 16 11 C -0.11 -4.20 4.95 29.85 0.15 -4.05 16 12 C 0.51 19.89 7.58 87.66 0.66 20.55 16 13 O -0.56 -29.23 14.98 -3.01 -0.05 -29.28 16 14 N -0.72 -19.05 5.45 -463.06 -2.52 -21.57 16 15 C 0.11 2.93 3.83 86.38 0.33 3.26 16 16 C -0.11 -1.62 3.07 -9.80 -0.03 -1.65 16 17 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 18 C -0.15 -1.93 6.56 31.89 0.21 -1.72 16 19 C 0.04 0.53 7.72 72.66 0.56 1.09 16 20 O -0.38 -8.23 10.76 -130.23 -1.40 -9.63 16 21 C 0.10 1.71 3.94 30.22 0.12 1.83 16 22 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 23 C 0.47 12.14 6.11 71.24 0.44 12.58 16 24 O -0.55 -19.17 17.28 28.31 0.49 -18.68 16 25 O -0.50 -10.77 11.09 -51.39 -0.57 -11.34 16 26 C -0.05 -1.98 4.77 -19.86 -0.09 -2.07 16 27 C -0.13 -4.77 8.86 22.27 0.20 -4.57 16 28 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 29 C -0.15 -4.46 10.05 22.27 0.22 -4.24 16 30 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 31 C -0.14 -6.07 9.67 22.27 0.22 -5.85 16 32 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.10 3.17 7.76 -2.39 -0.02 3.15 16 34 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.42 7.06 8.44 -92.71 -0.78 6.27 16 36 H 0.08 2.28 5.47 -2.39 -0.01 2.27 16 37 H 0.02 0.79 7.70 -2.39 -0.02 0.77 16 38 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 1.11 7.77 -2.38 -0.02 1.09 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.43 7.03 9.10 -74.05 -0.67 6.35 16 43 H 0.12 4.23 7.75 -2.91 -0.02 4.21 16 44 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 46 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.09 4.19 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -88.43 392.05 1.84 -86.59 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.45 Total: 24.72 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 4.03 Total: -13.59 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.25 Total: -78.19 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -1.53 Total: -68.92 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -88.43 1.84 -86.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.302 kcal (2) G-P(sol) polarization free energy of solvation -88.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds