Wall clock time and date at job start Wed Apr 1 2020 04:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48502 * 109.47249 * 240.00425 * 3 2 1 5 5 H 1.48502 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46991 * 119.99958 * 3 2 1 7 7 C 1.37869 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00183 * 183.66254 * 7 2 1 9 9 C 1.50707 * 120.00134 * 3.66521 * 7 2 1 10 10 H 1.08992 * 109.47061 * 180.85189 * 9 7 2 11 11 C 1.53001 * 109.46785 * 300.85300 * 9 7 2 12 12 C 1.50707 * 109.47175 * 294.99528 * 11 9 7 13 13 O 1.21289 * 119.99709 * 0.02562 * 12 11 9 14 14 N 1.34767 * 120.00340 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00273 * 185.01322 * 14 12 11 16 16 C 1.50706 * 112.84530 * 284.46062 * 15 14 12 17 17 O 1.20823 * 119.99702 * 143.90827 * 16 15 14 18 18 O 1.34225 * 120.00013 * 323.89681 * 16 15 14 19 19 C 1.53782 * 113.61527 * 153.15462 * 15 14 12 20 20 C 1.53785 * 87.07970 * 220.01511 * 19 15 14 21 21 C 1.53003 * 113.60967 * 139.98220 * 20 19 15 22 22 O 1.42896 * 109.47233 * 87.50668 * 21 20 19 23 23 C 1.53779 * 113.61711 * 55.65518 * 15 14 12 24 24 C 1.50700 * 109.47048 * 60.84536 * 9 7 2 25 25 C 1.38237 * 119.99272 * 88.08722 * 24 9 7 26 26 C 1.38233 * 119.99586 * 180.02562 * 25 24 9 27 27 C 1.38236 * 120.00382 * 359.94919 * 26 25 24 28 28 C 1.38245 * 119.99757 * 0.02562 * 27 26 25 29 29 C 1.38232 * 119.99864 * 0.06443 * 28 27 26 30 30 H 0.96996 * 120.00172 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47598 * 54.99766 * 11 9 7 32 32 H 1.09003 * 109.47365 * 174.99918 * 11 9 7 33 33 H 0.97013 * 119.99926 * 5.01090 * 14 12 11 34 34 H 0.96695 * 116.99948 * 180.02562 * 18 16 15 35 35 H 1.09001 * 113.61548 * 334.56874 * 19 15 14 36 36 H 1.09004 * 113.61591 * 105.46967 * 19 15 14 37 37 H 1.08997 * 113.61475 * 270.88402 * 20 19 15 38 38 H 1.09004 * 109.46378 * 207.50785 * 21 20 19 39 39 H 1.08996 * 109.47169 * 327.50199 * 21 20 19 40 40 H 0.96700 * 114.00293 * 179.97438 * 22 21 20 41 41 H 1.09002 * 113.61531 * 254.53418 * 23 15 14 42 42 H 1.09005 * 113.60849 * 25.35050 * 23 15 14 43 43 H 1.07995 * 120.00302 * 359.97155 * 25 24 9 44 44 H 1.08005 * 120.00449 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00698 * 179.72041 * 27 26 25 46 46 H 1.07995 * 120.00028 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00148 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0829 -1.1949 0.0592 9 6 1.2535 -2.4978 -0.0846 10 1 1.9605 -3.3268 -0.0569 11 6 0.2908 -2.6089 1.0994 12 6 1.0784 -2.6845 2.3820 13 8 2.2905 -2.6522 2.3521 14 7 0.4361 -2.7880 3.5622 15 6 1.1947 -2.7509 4.8149 16 6 1.9287 -4.0375 5.0927 17 8 3.0160 -4.0112 5.6190 18 8 1.3745 -5.2126 4.7557 19 6 0.3814 -2.2325 6.0126 20 6 1.6491 -1.4776 6.4462 21 6 1.3715 -0.0734 6.9866 22 8 1.1022 -0.1468 8.3880 23 6 2.0710 -1.4965 4.9676 24 6 0.4730 -2.5458 -1.3728 25 6 1.0653 -3.0356 -2.5218 26 6 0.3495 -3.0791 -3.7036 27 6 -0.9587 -2.6338 -3.7363 28 6 -1.5511 -2.1444 -2.5870 29 6 -0.8348 -2.0992 -1.4057 30 1 -0.4850 0.8400 0.0004 31 1 -0.3587 -1.7339 1.1230 32 1 -0.3154 -3.5084 0.9917 33 1 -0.5288 -2.8870 3.5823 34 1 1.8830 -6.0108 4.9541 35 1 -0.4422 -1.5768 5.7301 36 1 0.0804 -3.0161 6.7081 37 1 2.3038 -2.0600 7.0946 38 1 2.2422 0.5599 6.8165 39 1 0.5086 0.3497 6.4724 40 1 0.9173 0.7090 8.7984 41 1 3.1342 -1.6858 4.8192 42 1 1.7101 -0.6399 4.3981 43 1 2.0873 -3.3834 -2.4963 44 1 0.8123 -3.4614 -4.6015 45 1 -1.5165 -2.6636 -4.6606 46 1 -2.5731 -1.7962 -2.6126 47 1 -1.2975 -1.7165 -0.5079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:06 Heat of formation + Delta-G solvation = -125.086249 kcal Electronic energy + Delta-G solvation = -31519.653754 eV Core-core repulsion = 27247.256982 eV Total energy + Delta-G solvation = -4272.396772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16692 -38.99469 -38.45728 -37.78555 -36.39552 -35.85766 -34.24074 -32.98943 -31.09459 -29.86009 -28.89350 -27.87858 -25.92330 -25.82446 -24.55153 -22.77473 -21.65076 -21.18682 -20.03960 -19.50785 -19.18478 -17.93259 -17.40731 -16.99126 -16.65467 -15.97999 -15.82455 -15.44740 -15.30875 -14.96163 -14.89120 -14.25005 -14.08076 -13.86839 -13.74382 -13.45471 -12.94520 -12.72690 -12.53577 -12.34588 -12.25673 -11.86648 -11.80521 -11.53041 -11.52062 -11.40318 -11.19639 -11.05030 -10.92730 -10.83923 -10.59479 -10.50375 -10.40631 -10.20929 -10.03528 -9.95563 -9.35432 -9.22450 -8.78801 -8.69286 -8.45245 -7.82082 -7.46449 -6.01396 -4.10081 2.20981 2.47328 2.55987 2.98507 3.29944 3.32713 3.39237 3.56899 3.64800 3.99102 4.33835 4.40533 4.48731 4.63086 4.95134 5.02658 5.22336 5.26516 5.28010 5.42076 5.55691 5.62625 5.69852 5.79653 5.83239 5.89597 5.96980 6.01786 6.20134 6.30686 6.34792 6.43823 6.56326 6.56678 6.69092 6.75446 6.82121 7.11345 7.13015 7.24047 7.45312 7.46979 7.51777 7.66334 7.91519 7.97207 8.03960 8.15010 8.15448 8.32834 8.87469 9.10453 9.53451 10.93522 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003564 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.016756 B = 7854.708321 C = 9035.875647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.471 4.471 8 H 0.059 0.941 9 C 0.089 3.911 10 H 0.036 0.964 11 C -0.136 4.136 12 C 0.526 3.474 13 O -0.517 6.517 14 N -0.727 5.727 15 C 0.158 3.842 16 C 0.499 3.501 17 O -0.508 6.508 18 O -0.508 6.508 19 C -0.115 4.115 20 C -0.112 4.112 21 C 0.087 3.913 22 O -0.575 6.575 23 C -0.100 4.100 24 C -0.028 4.028 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.069 4.069 30 H 0.261 0.739 31 H 0.135 0.865 32 H 0.053 0.947 33 H 0.401 0.599 34 H 0.405 0.595 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.377 0.623 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -3.691 9.883 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.069 3.931 10 H 0.055 0.945 11 C -0.176 4.176 12 C 0.315 3.685 13 O -0.390 6.390 14 N -0.384 5.384 15 C 0.068 3.932 16 C 0.339 3.661 17 O -0.395 6.395 18 O -0.318 6.318 19 C -0.153 4.153 20 C -0.131 4.131 21 C 0.010 3.990 22 O -0.380 6.380 23 C -0.138 4.138 24 C -0.029 4.029 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.088 4.088 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.236 0.764 34 H 0.263 0.737 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.224 0.776 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.244 -3.780 9.767 11.300 hybrid contribution 0.287 1.104 -0.058 1.142 sum -3.956 -2.676 9.709 10.820 Atomic orbital electron populations 1.69617 1.05594 1.26268 1.51478 1.24862 0.94884 0.98846 0.95224 0.86681 0.79716 0.83149 0.78708 1.20394 1.21439 1.20380 1.20951 0.93331 0.89416 1.47110 0.92260 1.17622 0.91862 0.97053 0.86528 0.94513 1.21972 1.00515 1.03316 0.91765 1.21303 0.88940 0.73533 0.84684 1.90647 1.14447 1.47143 1.86799 1.46133 1.10292 1.78115 1.03851 1.21071 0.95041 0.89499 0.87544 1.23252 0.83980 0.85211 0.73636 1.90685 1.20802 1.87592 1.40397 1.84557 1.52775 1.16906 1.77597 1.23308 0.97581 1.00188 0.94239 1.22560 0.97675 0.96071 0.96817 1.22162 0.99354 0.96352 0.81173 1.86479 1.93588 1.35415 1.22517 1.23114 1.01616 0.95352 0.93684 1.20310 0.93295 0.92756 0.96508 1.20907 0.99040 1.01918 0.92992 1.20804 0.95012 1.02944 0.97264 1.20776 0.95650 1.03200 0.97535 1.21054 0.99233 1.01915 0.94007 1.21373 0.94168 0.95011 0.98243 0.92865 0.84770 0.92855 0.76416 0.73663 0.87544 0.90272 0.87609 0.93096 0.93058 0.77616 0.89068 0.87833 0.87638 0.88084 0.88287 0.88066 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.74 7.97 55.43 0.44 -21.29 16 2 C 0.06 1.56 5.14 -17.82 -0.09 1.47 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.47 -12.23 7.27 -34.44 -0.25 -12.48 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.09 2.06 1.97 -92.92 -0.18 1.88 16 10 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 11 C -0.14 -2.76 4.11 -27.88 -0.11 -2.87 16 12 C 0.53 10.51 7.24 -10.99 -0.08 10.43 16 13 O -0.52 -12.26 14.00 5.55 0.08 -12.19 16 14 N -0.73 -11.23 5.09 -47.92 -0.24 -11.48 16 15 C 0.16 2.33 1.12 -132.16 -0.15 2.18 16 16 C 0.50 7.87 7.14 36.01 0.26 8.13 16 17 O -0.51 -9.12 16.13 -18.75 -0.30 -9.43 16 18 O -0.51 -6.64 13.28 -39.24 -0.52 -7.16 16 19 C -0.12 -1.32 6.97 -25.92 -0.18 -1.50 16 20 C -0.11 -1.42 3.62 -89.80 -0.33 -1.74 16 21 C 0.09 0.93 6.89 37.16 0.26 1.19 16 22 O -0.57 -5.98 13.66 -35.23 -0.48 -6.47 16 23 C -0.10 -1.54 5.53 -25.92 -0.14 -1.68 16 24 C -0.03 -0.63 4.64 -104.62 -0.49 -1.11 16 25 C -0.13 -2.75 9.71 -39.58 -0.38 -3.13 16 26 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.15 -2.84 10.05 -39.58 -0.40 -3.23 16 28 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 29 C -0.07 -1.48 7.43 -39.58 -0.29 -1.77 16 30 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 31 H 0.13 2.87 4.74 -51.93 -0.25 2.62 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 5.01 8.76 -40.81 -0.36 4.65 16 34 H 0.41 3.50 9.10 45.56 0.41 3.91 16 35 H 0.11 1.05 7.90 -51.93 -0.41 0.64 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.11 1.47 7.63 -51.93 -0.40 1.08 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.49 7.84 -51.93 -0.41 0.09 16 40 H 0.38 2.15 9.12 45.56 0.42 2.57 16 41 H 0.09 1.62 7.63 -51.93 -0.40 1.23 16 42 H 0.10 1.66 8.10 -51.93 -0.42 1.24 16 43 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 45 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.14 3.00 5.19 -52.49 -0.27 2.73 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -32.24 386.56 -8.57 -40.81 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -4.99 Total: 16.09 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.36 Total: -10.53 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.20 Total: -32.77 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.23 Total: -35.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.24 -8.57 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.275 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds