Wall clock time and date at job start Wed Apr 1 2020 04:38:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86800 * 119.99705 * 2 1
4 4 H 1.48502 * 109.47249 * 240.00425 * 3 2 1
5 5 H 1.48502 * 109.47117 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.46991 * 119.99958 * 3 2 1
7 7 C 1.37869 * 120.00327 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00183 * 183.66254 * 7 2 1
9 9 C 1.50707 * 120.00134 * 3.66521 * 7 2 1
10 10 H 1.08992 * 109.47061 * 180.85189 * 9 7 2
11 11 C 1.53001 * 109.46785 * 300.85300 * 9 7 2
12 12 C 1.50707 * 109.47175 * 294.99528 * 11 9 7
13 13 O 1.21289 * 119.99709 * 0.02562 * 12 11 9
14 14 N 1.34767 * 120.00340 * 180.02562 * 12 11 9
15 15 C 1.46500 * 120.00273 * 185.01322 * 14 12 11
16 16 C 1.50706 * 112.84530 * 284.46062 * 15 14 12
17 17 O 1.20823 * 119.99702 * 143.90827 * 16 15 14
18 18 O 1.34225 * 120.00013 * 323.89681 * 16 15 14
19 19 C 1.53782 * 113.61527 * 153.15462 * 15 14 12
20 20 C 1.53785 * 87.07970 * 220.01511 * 19 15 14
21 21 C 1.53003 * 113.60967 * 139.98220 * 20 19 15
22 22 O 1.42896 * 109.47233 * 87.50668 * 21 20 19
23 23 C 1.53779 * 113.61711 * 55.65518 * 15 14 12
24 24 C 1.50700 * 109.47048 * 60.84536 * 9 7 2
25 25 C 1.38237 * 119.99272 * 88.08722 * 24 9 7
26 26 C 1.38233 * 119.99586 * 180.02562 * 25 24 9
27 27 C 1.38236 * 120.00382 * 359.94919 * 26 25 24
28 28 C 1.38245 * 119.99757 * 0.02562 * 27 26 25
29 29 C 1.38232 * 119.99864 * 0.06443 * 28 27 26
30 30 H 0.96996 * 120.00172 * 359.97438 * 1 2 3
31 31 H 1.08992 * 109.47598 * 54.99766 * 11 9 7
32 32 H 1.09003 * 109.47365 * 174.99918 * 11 9 7
33 33 H 0.97013 * 119.99926 * 5.01090 * 14 12 11
34 34 H 0.96695 * 116.99948 * 180.02562 * 18 16 15
35 35 H 1.09001 * 113.61548 * 334.56874 * 19 15 14
36 36 H 1.09004 * 113.61591 * 105.46967 * 19 15 14
37 37 H 1.08997 * 113.61475 * 270.88402 * 20 19 15
38 38 H 1.09004 * 109.46378 * 207.50785 * 21 20 19
39 39 H 1.08996 * 109.47169 * 327.50199 * 21 20 19
40 40 H 0.96700 * 114.00293 * 179.97438 * 22 21 20
41 41 H 1.09002 * 113.61531 * 254.53418 * 23 15 14
42 42 H 1.09005 * 113.60849 * 25.35050 * 23 15 14
43 43 H 1.07995 * 120.00302 * 359.97155 * 25 24 9
44 44 H 1.08005 * 120.00449 * 179.97438 * 26 25 24
45 45 H 1.07996 * 120.00698 * 179.72041 * 27 26 25
46 46 H 1.07995 * 120.00028 * 179.97438 * 28 27 26
47 47 H 1.07998 * 120.00148 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6966 -1.2126
5 1 1.2841 2.7465 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0829 -1.1949 0.0592
9 6 1.2535 -2.4978 -0.0846
10 1 1.9605 -3.3268 -0.0569
11 6 0.2908 -2.6089 1.0994
12 6 1.0784 -2.6845 2.3820
13 8 2.2905 -2.6522 2.3521
14 7 0.4361 -2.7880 3.5622
15 6 1.1947 -2.7509 4.8149
16 6 1.9287 -4.0375 5.0927
17 8 3.0160 -4.0112 5.6190
18 8 1.3745 -5.2126 4.7557
19 6 0.3814 -2.2325 6.0126
20 6 1.6491 -1.4776 6.4462
21 6 1.3715 -0.0734 6.9866
22 8 1.1022 -0.1468 8.3880
23 6 2.0710 -1.4965 4.9676
24 6 0.4730 -2.5458 -1.3728
25 6 1.0653 -3.0356 -2.5218
26 6 0.3495 -3.0791 -3.7036
27 6 -0.9587 -2.6338 -3.7363
28 6 -1.5511 -2.1444 -2.5870
29 6 -0.8348 -2.0992 -1.4057
30 1 -0.4850 0.8400 0.0004
31 1 -0.3587 -1.7339 1.1230
32 1 -0.3154 -3.5084 0.9917
33 1 -0.5288 -2.8870 3.5823
34 1 1.8830 -6.0108 4.9541
35 1 -0.4422 -1.5768 5.7301
36 1 0.0804 -3.0161 6.7081
37 1 2.3038 -2.0600 7.0946
38 1 2.2422 0.5599 6.8165
39 1 0.5086 0.3497 6.4724
40 1 0.9173 0.7090 8.7984
41 1 3.1342 -1.6858 4.8192
42 1 1.7101 -0.6399 4.3981
43 1 2.0873 -3.3834 -2.4963
44 1 0.8123 -3.4614 -4.6015
45 1 -1.5165 -2.6636 -4.6606
46 1 -2.5731 -1.7962 -2.6126
47 1 -1.2975 -1.7165 -0.5079
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601060583.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:06
Heat of formation + Delta-G solvation = -125.086249 kcal
Electronic energy + Delta-G solvation = -31519.653754 eV
Core-core repulsion = 27247.256982 eV
Total energy + Delta-G solvation = -4272.396772 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.16692 -38.99469 -38.45728 -37.78555 -36.39552 -35.85766 -34.24074 -32.98943
-31.09459 -29.86009 -28.89350 -27.87858 -25.92330 -25.82446 -24.55153 -22.77473
-21.65076 -21.18682 -20.03960 -19.50785 -19.18478 -17.93259 -17.40731 -16.99126
-16.65467 -15.97999 -15.82455 -15.44740 -15.30875 -14.96163 -14.89120 -14.25005
-14.08076 -13.86839 -13.74382 -13.45471 -12.94520 -12.72690 -12.53577 -12.34588
-12.25673 -11.86648 -11.80521 -11.53041 -11.52062 -11.40318 -11.19639 -11.05030
-10.92730 -10.83923 -10.59479 -10.50375 -10.40631 -10.20929 -10.03528 -9.95563
-9.35432 -9.22450 -8.78801 -8.69286 -8.45245 -7.82082 -7.46449 -6.01396
-4.10081 2.20981 2.47328 2.55987 2.98507 3.29944 3.32713 3.39237
3.56899 3.64800 3.99102 4.33835 4.40533 4.48731 4.63086 4.95134
5.02658 5.22336 5.26516 5.28010 5.42076 5.55691 5.62625 5.69852
5.79653 5.83239 5.89597 5.96980 6.01786 6.20134 6.30686 6.34792
6.43823 6.56326 6.56678 6.69092 6.75446 6.82121 7.11345 7.13015
7.24047 7.45312 7.46979 7.51777 7.66334 7.91519 7.97207 8.03960
8.15010 8.15448 8.32834 8.87469 9.10453 9.53451 10.93522
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.012197 B = 0.003564 C = 0.003098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2295.016756 B = 7854.708321 C = 9035.875647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.062 3.938
3 Si 0.889 3.111
4 H -0.278 1.278
5 H -0.289 1.289
6 H -0.278 1.278
7 C -0.471 4.471
8 H 0.059 0.941
9 C 0.089 3.911
10 H 0.036 0.964
11 C -0.136 4.136
12 C 0.526 3.474
13 O -0.517 6.517
14 N -0.727 5.727
15 C 0.158 3.842
16 C 0.499 3.501
17 O -0.508 6.508
18 O -0.508 6.508
19 C -0.115 4.115
20 C -0.112 4.112
21 C 0.087 3.913
22 O -0.575 6.575
23 C -0.100 4.100
24 C -0.028 4.028
25 C -0.130 4.130
26 C -0.142 4.142
27 C -0.153 4.153
28 C -0.144 4.144
29 C -0.069 4.069
30 H 0.261 0.739
31 H 0.135 0.865
32 H 0.053 0.947
33 H 0.401 0.599
34 H 0.405 0.595
35 H 0.106 0.894
36 H 0.079 0.921
37 H 0.106 0.894
38 H 0.051 0.949
39 H 0.051 0.949
40 H 0.377 0.623
41 H 0.091 0.909
42 H 0.103 0.897
43 H 0.105 0.895
44 H 0.101 0.899
45 H 0.099 0.901
46 H 0.101 0.899
47 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.202 -3.691 9.883 11.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.138 4.138
3 Si 0.717 3.283
4 H -0.204 1.204
5 H -0.214 1.214
6 H -0.204 1.204
7 C -0.508 4.508
8 H 0.077 0.923
9 C 0.069 3.931
10 H 0.055 0.945
11 C -0.176 4.176
12 C 0.315 3.685
13 O -0.390 6.390
14 N -0.384 5.384
15 C 0.068 3.932
16 C 0.339 3.661
17 O -0.395 6.395
18 O -0.318 6.318
19 C -0.153 4.153
20 C -0.131 4.131
21 C 0.010 3.990
22 O -0.380 6.380
23 C -0.138 4.138
24 C -0.029 4.029
25 C -0.149 4.149
26 C -0.160 4.160
27 C -0.172 4.172
28 C -0.162 4.162
29 C -0.088 4.088
30 H 0.071 0.929
31 H 0.152 0.848
32 H 0.071 0.929
33 H 0.236 0.764
34 H 0.263 0.737
35 H 0.125 0.875
36 H 0.097 0.903
37 H 0.124 0.876
38 H 0.069 0.931
39 H 0.069 0.931
40 H 0.224 0.776
41 H 0.109 0.891
42 H 0.122 0.878
43 H 0.124 0.876
44 H 0.119 0.881
45 H 0.117 0.883
46 H 0.119 0.881
47 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -4.244 -3.780 9.767 11.300
hybrid contribution 0.287 1.104 -0.058 1.142
sum -3.956 -2.676 9.709 10.820
Atomic orbital electron populations
1.69617 1.05594 1.26268 1.51478 1.24862 0.94884 0.98846 0.95224
0.86681 0.79716 0.83149 0.78708 1.20394 1.21439 1.20380 1.20951
0.93331 0.89416 1.47110 0.92260 1.17622 0.91862 0.97053 0.86528
0.94513 1.21972 1.00515 1.03316 0.91765 1.21303 0.88940 0.73533
0.84684 1.90647 1.14447 1.47143 1.86799 1.46133 1.10292 1.78115
1.03851 1.21071 0.95041 0.89499 0.87544 1.23252 0.83980 0.85211
0.73636 1.90685 1.20802 1.87592 1.40397 1.84557 1.52775 1.16906
1.77597 1.23308 0.97581 1.00188 0.94239 1.22560 0.97675 0.96071
0.96817 1.22162 0.99354 0.96352 0.81173 1.86479 1.93588 1.35415
1.22517 1.23114 1.01616 0.95352 0.93684 1.20310 0.93295 0.92756
0.96508 1.20907 0.99040 1.01918 0.92992 1.20804 0.95012 1.02944
0.97264 1.20776 0.95650 1.03200 0.97535 1.21054 0.99233 1.01915
0.94007 1.21373 0.94168 0.95011 0.98243 0.92865 0.84770 0.92855
0.76416 0.73663 0.87544 0.90272 0.87609 0.93096 0.93058 0.77616
0.89068 0.87833 0.87638 0.88084 0.88287 0.88066 0.84218
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -21.74 7.97 55.43 0.44 -21.29 16
2 C 0.06 1.56 5.14 -17.82 -0.09 1.47 16
3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16
4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.47 -12.23 7.27 -34.44 -0.25 -12.48 16
8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16
9 C 0.09 2.06 1.97 -92.92 -0.18 1.88 16
10 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16
11 C -0.14 -2.76 4.11 -27.88 -0.11 -2.87 16
12 C 0.53 10.51 7.24 -10.99 -0.08 10.43 16
13 O -0.52 -12.26 14.00 5.55 0.08 -12.19 16
14 N -0.73 -11.23 5.09 -47.92 -0.24 -11.48 16
15 C 0.16 2.33 1.12 -132.16 -0.15 2.18 16
16 C 0.50 7.87 7.14 36.01 0.26 8.13 16
17 O -0.51 -9.12 16.13 -18.75 -0.30 -9.43 16
18 O -0.51 -6.64 13.28 -39.24 -0.52 -7.16 16
19 C -0.12 -1.32 6.97 -25.92 -0.18 -1.50 16
20 C -0.11 -1.42 3.62 -89.80 -0.33 -1.74 16
21 C 0.09 0.93 6.89 37.16 0.26 1.19 16
22 O -0.57 -5.98 13.66 -35.23 -0.48 -6.47 16
23 C -0.10 -1.54 5.53 -25.92 -0.14 -1.68 16
24 C -0.03 -0.63 4.64 -104.62 -0.49 -1.11 16
25 C -0.13 -2.75 9.71 -39.58 -0.38 -3.13 16
26 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16
27 C -0.15 -2.84 10.05 -39.58 -0.40 -3.23 16
28 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16
29 C -0.07 -1.48 7.43 -39.58 -0.29 -1.77 16
30 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16
31 H 0.13 2.87 4.74 -51.93 -0.25 2.62 16
32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
33 H 0.40 5.01 8.76 -40.81 -0.36 4.65 16
34 H 0.41 3.50 9.10 45.56 0.41 3.91 16
35 H 0.11 1.05 7.90 -51.93 -0.41 0.64 16
36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16
37 H 0.11 1.47 7.63 -51.93 -0.40 1.08 16
38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
39 H 0.05 0.49 7.84 -51.93 -0.41 0.09 16
40 H 0.38 2.15 9.12 45.56 0.42 2.57 16
41 H 0.09 1.62 7.63 -51.93 -0.40 1.23 16
42 H 0.10 1.66 8.10 -51.93 -0.42 1.24 16
43 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16
44 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16
45 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16
46 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16
47 H 0.14 3.00 5.19 -52.49 -0.27 2.73 16
LS Contribution 386.56 15.07 5.83 5.83
Total: -1.00 -32.24 386.56 -8.57 -40.81
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: -4.99 Total: 16.09 kcal
Atomic # 6 Polarization: -7.17 SS G_CDS: -3.36 Total: -10.53 kcal
Atomic # 7 Polarization: -32.97 SS G_CDS: 0.20 Total: -32.77 kcal
Atomic # 8 Polarization: -34.01 SS G_CDS: -1.23 Total: -35.24 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -32.24 -8.57 -40.81 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601060583.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.275 kcal
(2) G-P(sol) polarization free energy of solvation -32.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.512 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds