Wall clock time and date at job start Wed Apr 1 2020 04:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48502 * 109.47249 * 240.00425 * 3 2 1 5 5 H 1.48502 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46991 * 119.99958 * 3 2 1 7 7 C 1.37869 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00183 * 183.66254 * 7 2 1 9 9 C 1.50707 * 120.00134 * 3.66521 * 7 2 1 10 10 H 1.08992 * 109.47061 * 180.85189 * 9 7 2 11 11 C 1.53001 * 109.46785 * 300.85300 * 9 7 2 12 12 C 1.50707 * 109.47175 * 294.99528 * 11 9 7 13 13 O 1.21289 * 119.99709 * 0.02562 * 12 11 9 14 14 N 1.34767 * 120.00340 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00273 * 185.01322 * 14 12 11 16 16 C 1.50706 * 112.84530 * 284.46062 * 15 14 12 17 17 O 1.20823 * 119.99702 * 143.90827 * 16 15 14 18 18 O 1.34225 * 120.00013 * 323.89681 * 16 15 14 19 19 C 1.53782 * 113.61527 * 153.15462 * 15 14 12 20 20 C 1.53785 * 87.07970 * 220.01511 * 19 15 14 21 21 C 1.53003 * 113.60967 * 139.98220 * 20 19 15 22 22 O 1.42896 * 109.47233 * 87.50668 * 21 20 19 23 23 C 1.53779 * 113.61711 * 55.65518 * 15 14 12 24 24 C 1.50700 * 109.47048 * 60.84536 * 9 7 2 25 25 C 1.38237 * 119.99272 * 88.08722 * 24 9 7 26 26 C 1.38233 * 119.99586 * 180.02562 * 25 24 9 27 27 C 1.38236 * 120.00382 * 359.94919 * 26 25 24 28 28 C 1.38245 * 119.99757 * 0.02562 * 27 26 25 29 29 C 1.38232 * 119.99864 * 0.06443 * 28 27 26 30 30 H 0.96996 * 120.00172 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47598 * 54.99766 * 11 9 7 32 32 H 1.09003 * 109.47365 * 174.99918 * 11 9 7 33 33 H 0.97013 * 119.99926 * 5.01090 * 14 12 11 34 34 H 0.96695 * 116.99948 * 180.02562 * 18 16 15 35 35 H 1.09001 * 113.61548 * 334.56874 * 19 15 14 36 36 H 1.09004 * 113.61591 * 105.46967 * 19 15 14 37 37 H 1.08997 * 113.61475 * 270.88402 * 20 19 15 38 38 H 1.09004 * 109.46378 * 207.50785 * 21 20 19 39 39 H 1.08996 * 109.47169 * 327.50199 * 21 20 19 40 40 H 0.96700 * 114.00293 * 179.97438 * 22 21 20 41 41 H 1.09002 * 113.61531 * 254.53418 * 23 15 14 42 42 H 1.09005 * 113.60849 * 25.35050 * 23 15 14 43 43 H 1.07995 * 120.00302 * 359.97155 * 25 24 9 44 44 H 1.08005 * 120.00449 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00698 * 179.72041 * 27 26 25 46 46 H 1.07995 * 120.00028 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00148 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0829 -1.1949 0.0592 9 6 1.2535 -2.4978 -0.0846 10 1 1.9605 -3.3268 -0.0569 11 6 0.2908 -2.6089 1.0994 12 6 1.0784 -2.6845 2.3820 13 8 2.2905 -2.6522 2.3521 14 7 0.4361 -2.7880 3.5622 15 6 1.1947 -2.7509 4.8149 16 6 1.9287 -4.0375 5.0927 17 8 3.0160 -4.0112 5.6190 18 8 1.3745 -5.2126 4.7557 19 6 0.3814 -2.2325 6.0126 20 6 1.6491 -1.4776 6.4462 21 6 1.3715 -0.0734 6.9866 22 8 1.1022 -0.1468 8.3880 23 6 2.0710 -1.4965 4.9676 24 6 0.4730 -2.5458 -1.3728 25 6 1.0653 -3.0356 -2.5218 26 6 0.3495 -3.0791 -3.7036 27 6 -0.9587 -2.6338 -3.7363 28 6 -1.5511 -2.1444 -2.5870 29 6 -0.8348 -2.0992 -1.4057 30 1 -0.4850 0.8400 0.0004 31 1 -0.3587 -1.7339 1.1230 32 1 -0.3154 -3.5084 0.9917 33 1 -0.5288 -2.8870 3.5823 34 1 1.8830 -6.0108 4.9541 35 1 -0.4422 -1.5768 5.7301 36 1 0.0804 -3.0161 6.7081 37 1 2.3038 -2.0600 7.0946 38 1 2.2422 0.5599 6.8165 39 1 0.5086 0.3497 6.4724 40 1 0.9173 0.7090 8.7984 41 1 3.1342 -1.6858 4.8192 42 1 1.7101 -0.6399 4.3981 43 1 2.0873 -3.3834 -2.4963 44 1 0.8123 -3.4614 -4.6015 45 1 -1.5165 -2.6636 -4.6606 46 1 -2.5731 -1.7962 -2.6126 47 1 -1.2975 -1.7165 -0.5079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:05 Heat of formation + Delta-G solvation = -148.068517 kcal Electronic energy + Delta-G solvation = -31520.650340 eV Core-core repulsion = 27247.256982 eV Total energy + Delta-G solvation = -4273.393358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.38090 -40.47111 -39.80270 -39.18305 -37.33102 -37.05173 -35.98295 -34.38162 -32.91953 -31.40929 -30.31240 -29.16480 -27.55354 -27.01279 -25.70796 -24.44666 -23.12592 -22.49666 -21.48430 -20.79392 -20.61121 -19.17270 -18.50254 -18.20141 -18.07221 -17.71865 -17.12183 -16.84037 -16.71164 -16.48109 -16.00046 -15.73583 -15.45872 -15.35876 -15.10816 -14.79723 -14.56530 -14.27971 -13.78444 -13.58674 -13.41895 -13.38835 -13.21735 -13.12006 -12.96289 -12.80866 -12.70727 -12.62710 -12.46330 -12.23139 -12.15029 -11.87290 -11.68423 -11.63900 -11.60792 -11.07245 -11.02566 -10.84897 -10.53999 -10.29735 -10.06561 -9.38513 -9.10036 -7.92825 -6.06821 0.89828 0.97453 1.01150 1.38812 1.40490 1.47968 1.79174 2.15865 2.26009 2.47426 3.05695 3.23061 3.28672 3.38419 3.43566 3.62701 4.07165 4.20213 4.34200 4.35165 4.39661 4.44362 4.51889 4.53608 4.59314 4.66465 4.72673 4.74328 4.82400 4.88285 4.93304 4.95779 5.10761 5.15913 5.21266 5.40233 5.46459 5.52395 5.54954 5.67146 5.70264 5.93636 5.96925 6.11155 6.39415 6.43994 6.59742 6.75472 6.87303 6.87826 6.92290 7.54644 7.59719 8.97491 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003564 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.016756 B = 7854.708321 C = 9035.875647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.924 3.076 4 H -0.288 1.288 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.492 4.492 8 H 0.024 0.976 9 C 0.089 3.911 10 H 0.010 0.990 11 C -0.125 4.125 12 C 0.525 3.475 13 O -0.563 6.563 14 N -0.707 5.707 15 C 0.147 3.853 16 C 0.497 3.503 17 O -0.538 6.538 18 O -0.502 6.502 19 C -0.094 4.094 20 C -0.104 4.104 21 C 0.092 3.908 22 O -0.588 6.588 23 C -0.106 4.106 24 C -0.051 4.051 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.080 4.080 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.419 0.581 34 H 0.425 0.575 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.128 0.872 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 -3.424 9.761 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.159 4.159 3 Si 0.752 3.248 4 H -0.215 1.215 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.530 4.530 8 H 0.042 0.958 9 C 0.070 3.930 10 H 0.028 0.972 11 C -0.165 4.165 12 C 0.314 3.686 13 O -0.440 6.440 14 N -0.364 5.364 15 C 0.058 3.942 16 C 0.338 3.662 17 O -0.427 6.427 18 O -0.314 6.314 19 C -0.131 4.131 20 C -0.123 4.123 21 C 0.014 3.986 22 O -0.397 6.397 23 C -0.145 4.145 24 C -0.052 4.052 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.167 4.167 28 C -0.164 4.164 29 C -0.098 4.098 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.257 0.743 34 H 0.286 0.714 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.146 0.854 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.411 -3.525 9.673 12.685 hybrid contribution 1.271 0.943 -0.069 1.584 sum -6.140 -2.582 9.605 11.688 Atomic orbital electron populations 1.69676 1.05192 1.26483 1.50640 1.25135 0.95702 0.99842 0.95229 0.86163 0.79079 0.81872 0.77664 1.21468 1.19894 1.21318 1.20861 0.91889 0.91398 1.48807 0.95783 1.17507 0.92060 0.94702 0.88705 0.97156 1.21788 0.99725 1.04009 0.90995 1.21273 0.88291 0.73147 0.85844 1.90640 1.16342 1.49435 1.87567 1.45805 1.11123 1.76422 1.03008 1.21319 0.95739 0.88988 0.88193 1.23428 0.83571 0.86122 0.73053 1.90675 1.21991 1.88113 1.41961 1.84503 1.52828 1.17150 1.76963 1.23329 0.97193 1.00419 0.92204 1.22410 0.97879 0.97561 0.94489 1.22058 1.00112 0.94755 0.81693 1.86418 1.93629 1.37459 1.22160 1.23040 0.99631 0.95620 0.96186 1.20292 0.94132 0.94558 0.96221 1.21077 0.99317 1.02814 0.93885 1.21144 0.95380 1.02114 0.97318 1.21204 0.95426 1.01390 0.98647 1.21387 1.00376 1.01220 0.93467 1.21356 0.93810 0.95564 0.99113 0.92669 0.85271 0.90615 0.74311 0.71415 0.85105 0.88466 0.89179 0.93170 0.91378 0.75165 0.92616 0.88684 0.88193 0.85239 0.84694 0.85397 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.58 7.97 21.45 0.17 -42.41 16 2 C 0.04 2.10 5.14 84.65 0.44 2.54 16 3 Si 0.92 43.13 29.54 68.60 2.03 45.16 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.49 -26.71 7.27 25.60 0.19 -26.53 16 8 H 0.02 1.43 7.82 -2.91 -0.02 1.40 16 9 C 0.09 4.33 1.97 -12.28 -0.02 4.31 16 10 H 0.01 0.52 7.91 -2.39 -0.02 0.50 16 11 C -0.13 -5.14 4.11 29.85 0.12 -5.02 16 12 C 0.53 21.39 7.24 87.66 0.63 22.03 16 13 O -0.56 -28.11 14.00 -3.06 -0.04 -28.15 16 14 N -0.71 -21.33 5.09 -423.91 -2.16 -23.49 16 15 C 0.15 4.27 1.12 3.39 0.00 4.27 16 16 C 0.50 15.72 7.14 71.24 0.51 16.22 16 17 O -0.54 -19.94 16.13 21.97 0.35 -19.59 16 18 O -0.50 -12.67 13.28 -51.37 -0.68 -13.35 16 19 C -0.09 -1.94 6.97 31.12 0.22 -1.72 16 20 C -0.10 -2.57 3.62 -10.27 -0.04 -2.61 16 21 C 0.09 1.81 6.89 71.98 0.50 2.31 16 22 O -0.59 -10.97 13.66 -148.98 -2.03 -13.00 16 23 C -0.11 -3.40 5.53 31.12 0.17 -3.22 16 24 C -0.05 -2.32 4.64 -19.87 -0.09 -2.41 16 25 C -0.15 -6.46 9.71 22.27 0.22 -6.25 16 26 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 27 C -0.15 -4.98 10.05 22.27 0.22 -4.75 16 28 C -0.15 -5.25 10.05 22.27 0.22 -5.02 16 29 C -0.08 -3.31 7.43 22.27 0.17 -3.14 16 30 H 0.26 12.33 8.31 -92.71 -0.77 11.56 16 31 H 0.13 5.48 4.74 -2.39 -0.01 5.47 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.42 9.58 8.76 -92.70 -0.81 8.76 16 34 H 0.42 6.94 9.10 -74.06 -0.67 6.27 16 35 H 0.13 2.10 7.90 -2.39 -0.02 2.08 16 36 H 0.10 1.72 8.10 -2.38 -0.02 1.70 16 37 H 0.09 2.53 7.63 -2.39 -0.02 2.51 16 38 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 40 H 0.40 3.57 9.12 -74.06 -0.68 2.89 16 41 H 0.05 2.15 7.63 -2.39 -0.02 2.13 16 42 H 0.09 3.15 8.10 -2.38 -0.02 3.13 16 43 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 45 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 46 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.14 5.63 5.19 -2.91 -0.02 5.61 16 Total: -1.00 -72.30 386.56 0.18 -72.12 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -1.13 Total: 36.56 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.68 Total: -13.85 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -1.99 Total: -65.90 kcal Atomic # 8 Polarization: -71.69 SS G_CDS: -2.41 Total: -74.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -72.30 0.18 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.952 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds