Wall clock time and date at job start Wed Apr 1 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99475 * 2 1 4 4 H 1.48501 * 109.47220 * 89.99960 * 3 2 1 5 5 H 1.48502 * 109.47074 * 210.00103 * 3 2 1 6 6 H 1.48501 * 109.47320 * 329.99864 * 3 2 1 7 7 C 1.37871 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99676 * 180.60869 * 7 2 1 9 9 C 1.50698 * 120.00338 * 0.60105 * 7 2 1 10 10 H 1.09002 * 109.46647 * 324.71976 * 9 7 2 11 11 C 1.50697 * 109.47220 * 204.72182 * 9 7 2 12 12 O 1.21280 * 119.99760 * 240.00154 * 11 9 7 13 13 N 1.34769 * 120.00475 * 59.99889 * 11 9 7 14 14 C 1.46932 * 120.62847 * 359.71912 * 13 11 9 15 15 C 1.53623 * 108.54312 * 126.36974 * 14 13 11 16 16 C 1.53047 * 109.24052 * 54.85753 * 15 14 13 17 17 C 1.52998 * 109.45696 * 178.49444 * 16 15 14 18 18 H 1.09006 * 109.46996 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47583 * 60.06424 * 17 16 15 20 20 C 1.50705 * 109.47193 * 300.06209 * 17 16 15 21 21 O 1.20828 * 119.99732 * 115.00244 * 20 17 16 22 22 O 1.34226 * 120.00215 * 295.01005 * 20 17 16 23 23 C 1.53039 * 109.53754 * 298.51116 * 16 15 14 24 24 C 1.46927 * 120.63418 * 180.02562 * 13 11 9 25 25 C 1.50699 * 109.47052 * 84.71659 * 9 7 2 26 26 C 1.38236 * 119.99664 * 52.33224 * 25 9 7 27 27 C 1.38235 * 119.99792 * 179.80789 * 26 25 9 28 28 C 1.38237 * 119.99868 * 0.39880 * 27 26 25 29 29 C 1.38229 * 120.00191 * 359.85851 * 28 27 26 30 30 C 1.38233 * 120.00070 * 232.60810 * 25 9 7 31 31 H 0.96995 * 119.99375 * 174.92852 * 1 2 3 32 32 H 1.09004 * 109.58691 * 246.20501 * 14 13 11 33 33 H 1.08995 * 109.58607 * 6.62830 * 14 13 11 34 34 H 1.08998 * 109.63262 * 294.86731 * 15 14 13 35 35 H 1.08999 * 109.45900 * 174.74145 * 15 14 13 36 36 H 1.08995 * 109.45819 * 58.53318 * 16 15 14 37 37 H 0.96695 * 114.00370 * 300.00197 * 19 17 16 38 38 H 0.96700 * 116.99994 * 180.02562 * 22 20 17 39 39 H 1.09010 * 109.49652 * 301.41624 * 23 16 15 40 40 H 1.09003 * 109.50050 * 181.31774 * 23 16 15 41 41 H 1.09001 * 109.58170 * 353.36881 * 24 13 11 42 42 H 1.08992 * 109.59102 * 113.65224 * 24 13 11 43 43 H 1.08000 * 120.00151 * 359.97438 * 26 25 9 44 44 H 1.08002 * 120.00512 * 180.23012 * 27 26 25 45 45 H 1.07998 * 120.00046 * 179.83137 * 28 27 26 46 46 H 1.08000 * 120.00749 * 179.97438 * 29 28 27 47 47 H 1.08000 * 120.00044 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 1.4001 5 1 3.5467 1.4404 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 0.0094 9 6 1.2513 -2.4991 -0.0148 10 1 0.3378 -2.3976 0.5711 11 6 2.1125 -3.5827 0.5811 12 8 2.4114 -4.5531 -0.0822 13 7 2.5505 -3.4736 1.8509 14 6 2.2019 -2.3010 2.6648 15 6 1.5699 -2.7880 3.9776 16 6 2.5246 -3.7678 4.6640 17 6 1.9164 -4.2272 5.9905 18 1 2.5964 -4.9247 6.4798 19 8 0.6673 -4.8756 5.7428 20 6 1.6942 -3.0325 6.8818 21 8 0.5716 -2.7106 7.1918 22 8 2.7432 -2.3259 7.3312 23 6 2.7502 -4.9813 3.7591 24 6 3.3913 -4.5216 2.4455 25 6 0.8998 -2.8607 -1.4349 26 6 1.8841 -2.8878 -2.4051 27 6 1.5624 -3.2233 -3.7069 28 6 0.2548 -3.5237 -4.0403 29 6 -0.7304 -3.4914 -3.0712 30 6 -0.4080 -3.1596 -1.7685 31 1 -0.4849 -0.8368 -0.0743 32 1 3.1020 -1.7254 2.8809 33 1 1.4892 -1.6791 2.1233 34 1 0.6252 -3.2887 3.7657 35 1 1.3908 -1.9354 4.6326 36 1 3.4775 -3.2738 4.8533 37 1 0.0117 -4.3133 5.3080 38 1 2.5508 -1.5682 7.9003 39 1 1.7943 -5.4613 3.5492 40 1 3.4116 -5.6894 4.2584 41 1 3.4636 -5.3652 1.7591 42 1 4.3869 -4.1238 2.6417 43 1 2.9050 -2.6494 -2.1454 44 1 2.3320 -3.2481 -4.4642 45 1 0.0030 -3.7831 -5.0579 46 1 -1.7520 -3.7256 -3.3316 47 1 -1.1777 -3.1345 -1.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:29 Heat of formation + Delta-G solvation = -183.486339 kcal Electronic energy + Delta-G solvation = -31810.775134 eV Core-core repulsion = 27535.845944 eV Total energy + Delta-G solvation = -4274.929190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86973 -41.18486 -39.82712 -38.88085 -37.46353 -36.80332 -35.98843 -33.83278 -32.72009 -32.02408 -31.64712 -29.72810 -28.72302 -26.03305 -25.04525 -24.40589 -23.27732 -22.92905 -22.19348 -21.38458 -20.03548 -19.23505 -19.11878 -18.63102 -17.76530 -17.58734 -17.20940 -16.77348 -16.68576 -16.31177 -15.95091 -15.66632 -15.59790 -15.52988 -15.02349 -14.74191 -14.65209 -14.29597 -14.17187 -14.02245 -13.84795 -13.67207 -13.44546 -13.23652 -13.08107 -12.89763 -12.73692 -12.60881 -12.57477 -12.24742 -12.00351 -11.98088 -11.92252 -11.79578 -11.74824 -11.43640 -11.02321 -10.87964 -10.64509 -10.42043 -9.66836 -9.52645 -9.34239 -8.59166 -6.33854 0.64302 0.70165 1.06751 1.54733 1.62434 1.78872 1.82877 1.99164 2.24401 2.56070 3.07824 3.11993 3.21631 3.48878 3.62946 3.74390 4.03893 4.10096 4.15391 4.20294 4.20901 4.31357 4.32647 4.36834 4.38239 4.43237 4.57422 4.65422 4.71090 4.82274 4.85342 4.89340 4.93005 4.98923 5.04267 5.12453 5.24862 5.31621 5.36360 5.54229 5.67394 5.70446 5.73739 5.81833 6.05564 6.15748 6.30236 6.32951 6.47072 6.60121 6.91220 7.37495 7.42040 8.78381 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.003709 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.946386 B = 7546.859703 C = 8776.422699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 1.102 2.898 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.574 4.574 8 H 0.045 0.955 9 C 0.047 3.953 10 H 0.044 0.956 11 C 0.528 3.472 12 O -0.593 6.593 13 N -0.604 5.604 14 C 0.117 3.883 15 C -0.133 4.133 16 C -0.102 4.102 17 C 0.129 3.871 18 H 0.167 0.833 19 O -0.543 6.543 20 C 0.457 3.543 21 O -0.548 6.548 22 O -0.504 6.504 23 C -0.109 4.109 24 C 0.105 3.895 25 C -0.047 4.047 26 C -0.107 4.107 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.127 4.127 30 C -0.151 4.151 31 H 0.263 0.737 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.387 0.613 38 H 0.427 0.573 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.149 0.851 46 H 0.141 0.859 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 -5.680 10.221 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.207 4.207 3 Si 0.926 3.074 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.612 4.612 8 H 0.064 0.936 9 C 0.026 3.974 10 H 0.062 0.938 11 C 0.319 3.681 12 O -0.475 6.475 13 N -0.336 5.336 14 C -0.006 4.006 15 C -0.172 4.172 16 C -0.121 4.121 17 C 0.068 3.932 18 H 0.184 0.816 19 O -0.350 6.350 20 C 0.300 3.700 21 O -0.438 6.438 22 O -0.318 6.318 23 C -0.147 4.147 24 C -0.017 4.017 25 C -0.048 4.048 26 C -0.125 4.125 27 C -0.152 4.152 28 C -0.158 4.158 29 C -0.145 4.145 30 C -0.169 4.169 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.238 0.762 38 H 0.289 0.711 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.167 0.833 46 H 0.159 0.841 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.202 -5.287 10.091 12.971 hybrid contribution -0.572 -0.353 -0.019 0.672 sum 5.630 -5.640 10.072 12.844 Atomic orbital electron populations 1.70856 1.07630 1.30755 1.46334 1.26832 0.96330 1.05063 0.92446 0.83093 0.74112 0.72086 0.78143 1.18881 1.20376 1.21712 1.21525 0.93414 0.89986 1.56244 0.93644 1.18059 0.95625 0.93584 0.90111 0.93816 1.21137 0.79501 0.86119 0.81335 1.90542 1.60910 1.34592 1.61440 1.47976 1.51248 1.22305 1.12032 1.21855 1.01158 0.86889 0.90675 1.22105 0.99015 0.99320 0.96712 1.21774 1.00602 0.96887 0.92819 1.21755 0.87836 0.90675 0.92889 0.81584 1.86600 1.24448 1.41626 1.82335 1.24806 0.82343 0.84424 0.78423 1.90750 1.26723 1.69025 1.57347 1.84497 1.38572 1.44655 1.64043 1.21800 1.02084 0.96965 0.93856 1.21715 0.93997 0.91007 0.95011 1.20202 0.93442 0.94166 0.96961 1.20826 0.98422 0.99599 0.93645 1.21365 0.97721 1.00271 0.95806 1.21308 0.92581 1.01756 1.00196 1.21315 1.00364 1.00266 0.92583 1.21152 0.95792 1.02288 0.97650 0.92568 0.90928 0.89472 0.92163 0.90827 0.86781 0.76210 0.71076 0.92272 0.87251 0.91064 0.90129 0.88781 0.84476 0.83296 0.84074 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.53 13.61 21.45 0.29 -50.24 16 2 C -0.01 -0.26 5.34 84.65 0.45 0.20 16 3 Si 1.10 46.11 29.90 68.60 2.05 48.16 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.57 -28.58 5.20 25.60 0.13 -28.44 16 8 H 0.05 2.33 7.80 -2.91 -0.02 2.30 16 9 C 0.05 2.28 1.16 -13.03 -0.02 2.27 16 10 H 0.04 2.24 6.16 -2.39 -0.01 2.22 16 11 C 0.53 23.92 6.99 87.66 0.61 24.53 16 12 O -0.59 -29.55 14.90 -3.03 -0.05 -29.59 16 13 N -0.60 -21.73 2.97 -818.00 -2.43 -24.16 16 14 C 0.12 3.85 5.62 86.51 0.49 4.34 16 15 C -0.13 -3.36 4.81 30.82 0.15 -3.21 16 16 C -0.10 -1.88 2.03 -10.77 -0.02 -1.91 16 17 C 0.13 2.18 3.30 29.85 0.10 2.28 16 18 H 0.17 1.84 8.14 -2.38 -0.02 1.82 16 19 O -0.54 -11.63 12.31 -129.95 -1.60 -13.23 16 20 C 0.46 8.83 6.35 71.24 0.45 9.28 16 21 O -0.55 -14.80 17.08 28.38 0.48 -14.31 16 22 O -0.50 -6.79 13.42 -51.38 -0.69 -7.48 16 23 C -0.11 -2.22 5.19 30.68 0.16 -2.06 16 24 C 0.10 2.91 6.43 86.37 0.56 3.47 16 25 C -0.05 -2.24 4.16 -19.87 -0.08 -2.32 16 26 C -0.11 -4.92 8.39 22.27 0.19 -4.73 16 27 C -0.13 -5.13 10.05 22.27 0.22 -4.91 16 28 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 29 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 30 C -0.15 -6.62 9.56 22.27 0.21 -6.41 16 31 H 0.26 14.67 6.55 -92.71 -0.61 14.07 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.09 3.59 4.86 -2.39 -0.01 3.58 16 34 H 0.06 1.62 6.85 -2.39 -0.02 1.61 16 35 H 0.07 1.79 7.17 -2.39 -0.02 1.78 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.39 8.14 7.11 -74.06 -0.53 7.61 16 38 H 0.43 2.70 9.10 -74.06 -0.67 2.03 16 39 H 0.06 1.44 7.73 -2.38 -0.02 1.42 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 2.28 7.01 -2.39 -0.02 2.26 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 4.54 7.84 -2.91 -0.02 4.51 16 44 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 45 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 46 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 47 H 0.11 4.54 7.96 -2.91 -0.02 4.51 16 Total: -1.00 -71.95 381.21 2.10 -69.85 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.02 Total: 37.77 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.05 Total: -16.76 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -2.13 Total: -74.40 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -1.85 Total: -64.62 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.05 Total: 48.16 kcal Total: -71.95 2.10 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.640 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds