Wall clock time and date at job start Wed Apr 1 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48499 * 109.47067 * 270.00493 * 3 2 1 5 5 H 1.48493 * 109.47014 * 30.00482 * 3 2 1 6 6 H 1.48499 * 109.46876 * 150.00232 * 3 2 1 7 7 C 1.37880 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00235 * 185.10560 * 7 2 1 9 9 C 1.50698 * 119.99694 * 5.09963 * 7 2 1 10 10 H 1.09005 * 109.47278 * 34.22024 * 9 7 2 11 11 C 1.52997 * 109.47039 * 154.22062 * 9 7 2 12 12 C 1.50702 * 109.47053 * 295.00020 * 11 9 7 13 13 O 1.21288 * 120.00035 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00199 * 179.97438 * 12 11 9 15 15 C 1.46499 * 120.00209 * 174.95885 * 14 12 11 16 16 C 1.53001 * 110.45693 * 298.20634 * 15 14 12 17 17 C 1.50693 * 109.47408 * 306.40169 * 16 15 14 18 18 O 1.20828 * 119.99794 * 353.81516 * 17 16 15 19 19 O 1.34230 * 120.00210 * 173.54325 * 17 16 15 20 20 C 1.54509 * 110.50891 * 60.81369 * 15 14 12 21 21 C 1.54480 * 104.06386 * 118.78536 * 20 15 14 22 22 O 1.44430 * 104.80153 * 336.01678 * 21 20 15 23 23 C 1.44432 * 105.27436 * 40.51527 * 22 21 20 24 24 C 1.50705 * 109.47148 * 274.21929 * 9 7 2 25 25 C 1.38227 * 120.00143 * 304.49293 * 24 9 7 26 26 C 1.38229 * 120.00344 * 179.76930 * 25 24 9 27 27 C 1.38238 * 119.99729 * 0.50532 * 26 25 24 28 28 C 1.38232 * 119.99833 * 359.74854 * 27 26 25 29 29 C 1.38237 * 120.00439 * 0.02562 * 28 27 26 30 30 H 0.97002 * 119.99791 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47586 * 175.00314 * 11 9 7 32 32 H 1.08996 * 109.47263 * 55.00214 * 11 9 7 33 33 H 0.96999 * 120.00008 * 354.96205 * 14 12 11 34 34 H 1.08996 * 109.47114 * 186.39674 * 16 15 14 35 35 H 1.09002 * 109.47049 * 66.40057 * 16 15 14 36 36 H 0.96697 * 117.00156 * 179.97438 * 19 17 16 37 37 H 1.09004 * 110.51071 * 237.42704 * 20 15 14 38 38 H 1.08994 * 110.51446 * 0.02562 * 20 15 14 39 39 H 1.08996 * 110.37431 * 94.84772 * 21 20 15 40 40 H 1.08996 * 110.37457 * 217.19362 * 21 20 15 41 41 H 1.08994 * 110.37234 * 200.65353 * 23 22 21 42 42 H 1.08998 * 110.37170 * 78.31720 * 23 22 21 43 43 H 1.08003 * 119.99769 * 359.97438 * 25 24 9 44 44 H 1.08004 * 120.00586 * 180.23202 * 26 25 24 45 45 H 1.08002 * 120.00195 * 179.72854 * 27 26 25 46 46 H 1.08007 * 120.00277 * 179.97438 * 28 27 26 47 47 H 1.07991 * 120.00406 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0827 9 6 1.2555 -2.4965 -0.1171 10 1 0.3849 -2.3588 -0.7585 11 6 2.1730 -3.5599 -0.7240 12 6 2.5233 -3.1734 -2.1379 13 8 2.0821 -2.1486 -2.6135 14 7 3.3268 -3.9666 -2.8739 15 6 3.5786 -3.6498 -4.2818 16 6 2.2740 -3.6880 -5.0802 17 6 1.5898 -5.0126 -4.8614 18 8 2.1447 -5.8827 -4.2328 19 8 0.3617 -5.2242 -5.3602 20 6 4.2534 -2.2660 -4.4130 21 6 5.6130 -2.5729 -5.0790 22 8 5.8805 -3.9541 -4.7521 23 6 4.6105 -4.6291 -4.8840 24 6 0.8064 -2.9419 1.2508 25 6 1.7312 -3.0918 2.2671 26 6 1.3187 -3.4957 3.5230 27 6 -0.0174 -3.7599 3.7599 28 6 -0.9415 -3.6150 2.7421 29 6 -0.5296 -3.2065 1.4873 30 1 -0.4850 0.8401 0.0004 31 1 1.6616 -4.5225 -0.7266 32 1 3.0846 -3.6344 -0.1312 33 1 3.7384 -4.7473 -2.4714 34 1 2.4931 -3.5629 -6.1405 35 1 1.6203 -2.8820 -4.7468 36 1 -0.0364 -6.0897 -5.1944 37 1 3.6575 -1.6090 -5.0466 38 1 4.4000 -1.8178 -3.4303 39 1 5.5439 -2.4451 -6.1592 40 1 6.3906 -1.9286 -4.6687 41 1 4.6179 -5.5642 -4.3240 42 1 4.3877 -4.8166 -5.9343 43 1 2.7758 -2.8901 2.0807 44 1 2.0407 -3.6093 4.3181 45 1 -0.3392 -4.0797 4.7400 46 1 -1.9854 -3.8217 2.9270 47 1 -1.2515 -3.0938 0.6921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:18 Heat of formation + Delta-G solvation = -145.561517 kcal Electronic energy + Delta-G solvation = -31805.380076 eV Core-core repulsion = 27532.095429 eV Total energy + Delta-G solvation = -4273.284647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95465 -39.54912 -38.62424 -37.93982 -36.19362 -34.65871 -33.81471 -31.84713 -31.20043 -29.98651 -29.95250 -28.69730 -27.44688 -25.48389 -23.20623 -22.79571 -22.00219 -21.59431 -20.81721 -19.45344 -19.08351 -18.10739 -17.00325 -16.87617 -16.38293 -16.08078 -15.92070 -15.65117 -15.44118 -15.31547 -14.65132 -14.41398 -14.22274 -13.95198 -13.80288 -13.18572 -13.07493 -12.92139 -12.66560 -12.43596 -12.34629 -12.25710 -11.87233 -11.71331 -11.61031 -11.53250 -11.48362 -11.22026 -11.04547 -10.88231 -10.69979 -10.56591 -10.47970 -10.22731 -10.00041 -9.87705 -9.47087 -9.09456 -8.83330 -8.64650 -8.33162 -7.98780 -7.55632 -5.92949 -3.92708 2.19456 2.34630 2.40156 2.97064 3.37441 3.42736 3.43891 3.45158 3.57609 3.84943 4.40930 4.51745 4.63628 4.73820 4.80448 5.04191 5.09166 5.23522 5.24699 5.39166 5.42189 5.64829 5.67606 5.70202 5.71151 5.75376 5.77753 5.88824 5.93468 6.12787 6.19653 6.25376 6.33107 6.45731 6.46206 6.57898 6.63178 6.82259 6.93128 6.95095 7.08516 7.36033 7.46649 7.56604 7.85638 7.87243 7.99137 8.05774 8.10708 8.39304 9.01760 9.05923 9.68845 11.16787 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.004012 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.752276 B = 6977.956729 C = 8235.479629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.085 3.915 10 H 0.064 0.936 11 C -0.123 4.123 12 C 0.515 3.485 13 O -0.498 6.498 14 N -0.728 5.728 15 C 0.166 3.834 16 C -0.125 4.125 17 C 0.484 3.516 18 O -0.511 6.511 19 O -0.517 6.517 20 C -0.152 4.152 21 C 0.043 3.957 22 O -0.372 6.372 23 C 0.049 3.951 24 C -0.017 4.017 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.156 4.156 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.408 0.592 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -10.600 -9.254 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.066 3.934 10 H 0.082 0.918 11 C -0.163 4.163 12 C 0.302 3.698 13 O -0.370 6.370 14 N -0.384 5.384 15 C 0.078 3.922 16 C -0.163 4.163 17 C 0.327 3.673 18 O -0.398 6.398 19 O -0.329 6.329 20 C -0.190 4.190 21 C -0.034 4.034 22 O -0.291 6.291 23 C -0.028 4.028 24 C -0.018 4.018 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.174 4.174 28 C -0.147 4.147 29 C -0.133 4.133 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.235 0.765 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.731 -9.644 -9.431 14.295 hybrid contribution 0.030 0.288 0.388 0.484 sum 4.761 -9.356 -9.043 13.856 Atomic orbital electron populations 1.69930 1.05852 1.26315 1.49852 1.24813 0.94650 0.98754 0.94551 0.86704 0.79848 0.84092 0.77928 1.20731 1.21587 1.20167 1.20680 0.92255 0.89516 1.50085 0.93136 1.17767 0.95768 0.91417 0.88433 0.91830 1.21777 1.01882 1.00481 0.92154 1.20934 0.77524 0.83058 0.88302 1.90720 1.51352 1.22897 1.72003 1.46231 1.52063 1.30883 1.09184 1.21170 0.92481 0.95321 0.83276 1.21904 0.97610 0.94108 1.02724 1.23355 0.79061 0.89901 0.74995 1.90666 1.65540 1.45945 1.37693 1.84554 1.32437 1.42585 1.73346 1.23298 0.95456 0.96262 1.04008 1.23510 0.97438 0.83514 0.98967 1.89159 1.29078 1.20502 1.90313 1.23694 0.82516 0.96329 1.00240 1.20670 0.92326 0.90286 0.98523 1.20936 0.99755 0.99853 0.92620 1.20963 0.95511 1.01692 0.96918 1.20781 0.93762 1.04581 0.98248 1.20965 0.98288 1.01527 0.93963 1.21037 0.96270 0.99583 0.96413 0.93207 0.91628 0.90429 0.76543 0.87131 0.85357 0.73360 0.89495 0.88639 0.92268 0.88881 0.87635 0.91526 0.86924 0.87736 0.87886 0.87755 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.00 55.43 0.72 -24.78 16 2 C 0.08 2.08 5.45 -17.82 -0.10 1.99 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.49 -12.85 6.33 -34.44 -0.22 -13.07 16 8 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.09 2.01 1.54 -92.92 -0.14 1.86 16 10 H 0.06 1.72 7.23 -51.93 -0.38 1.34 16 11 C -0.12 -2.36 4.96 -27.88 -0.14 -2.50 16 12 C 0.51 9.67 6.79 -10.99 -0.07 9.59 16 13 O -0.50 -11.10 12.37 5.55 0.07 -11.04 16 14 N -0.73 -10.76 3.69 -46.16 -0.17 -10.93 16 15 C 0.17 2.12 0.51 -130.25 -0.07 2.05 16 16 C -0.12 -1.49 4.37 -27.89 -0.12 -1.62 16 17 C 0.48 6.00 7.94 36.00 0.29 6.29 16 18 O -0.51 -7.02 14.70 -18.75 -0.28 -7.29 16 19 O -0.52 -5.48 13.42 -39.26 -0.53 -6.01 16 20 C -0.15 -1.98 5.50 -25.16 -0.14 -2.12 16 21 C 0.04 0.46 7.63 37.93 0.29 0.75 16 22 O -0.37 -4.72 11.65 -35.23 -0.41 -5.13 16 23 C 0.05 0.55 5.90 37.93 0.22 0.78 16 24 C -0.02 -0.39 4.77 -104.62 -0.50 -0.89 16 25 C -0.11 -2.34 8.87 -39.59 -0.35 -2.70 16 26 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 27 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 28 C -0.13 -2.45 10.05 -39.58 -0.40 -2.84 16 29 C -0.11 -2.47 9.67 -39.58 -0.38 -2.85 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.40 7.84 -51.93 -0.41 1.00 16 33 H 0.40 5.36 8.26 -40.82 -0.34 5.02 16 34 H 0.11 0.96 7.99 -51.93 -0.42 0.54 16 35 H 0.13 1.87 6.74 -51.93 -0.35 1.52 16 36 H 0.41 2.60 9.10 45.56 0.41 3.01 16 37 H 0.09 1.07 7.73 -51.93 -0.40 0.67 16 38 H 0.09 1.55 7.20 -51.93 -0.37 1.17 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.20 7.27 -51.93 -0.38 0.82 16 42 H 0.07 0.63 7.76 -51.93 -0.40 0.22 16 43 H 0.11 2.25 7.79 -52.48 -0.41 1.84 16 44 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 47 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -33.13 387.68 -8.33 -41.47 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.93 Total: 12.26 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.62 Total: -11.30 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.55 Total: -35.71 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.14 Total: -29.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.13 -8.33 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.094 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds