Wall clock time and date at job start Wed Apr 1 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48499 * 109.47067 * 270.00493 * 3 2 1 5 5 H 1.48493 * 109.47014 * 30.00482 * 3 2 1 6 6 H 1.48499 * 109.46876 * 150.00232 * 3 2 1 7 7 C 1.37880 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00235 * 185.10560 * 7 2 1 9 9 C 1.50698 * 119.99694 * 5.09963 * 7 2 1 10 10 H 1.09005 * 109.47278 * 34.22024 * 9 7 2 11 11 C 1.52997 * 109.47039 * 154.22062 * 9 7 2 12 12 C 1.50702 * 109.47053 * 295.00020 * 11 9 7 13 13 O 1.21288 * 120.00035 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00199 * 179.97438 * 12 11 9 15 15 C 1.46499 * 120.00209 * 174.95885 * 14 12 11 16 16 C 1.53001 * 110.45693 * 298.20634 * 15 14 12 17 17 C 1.50693 * 109.47408 * 306.40169 * 16 15 14 18 18 O 1.20828 * 119.99794 * 353.81516 * 17 16 15 19 19 O 1.34230 * 120.00210 * 173.54325 * 17 16 15 20 20 C 1.54509 * 110.50891 * 60.81369 * 15 14 12 21 21 C 1.54480 * 104.06386 * 118.78536 * 20 15 14 22 22 O 1.44430 * 104.80153 * 336.01678 * 21 20 15 23 23 C 1.44432 * 105.27436 * 40.51527 * 22 21 20 24 24 C 1.50705 * 109.47148 * 274.21929 * 9 7 2 25 25 C 1.38227 * 120.00143 * 304.49293 * 24 9 7 26 26 C 1.38229 * 120.00344 * 179.76930 * 25 24 9 27 27 C 1.38238 * 119.99729 * 0.50532 * 26 25 24 28 28 C 1.38232 * 119.99833 * 359.74854 * 27 26 25 29 29 C 1.38237 * 120.00439 * 0.02562 * 28 27 26 30 30 H 0.97002 * 119.99791 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47586 * 175.00314 * 11 9 7 32 32 H 1.08996 * 109.47263 * 55.00214 * 11 9 7 33 33 H 0.96999 * 120.00008 * 354.96205 * 14 12 11 34 34 H 1.08996 * 109.47114 * 186.39674 * 16 15 14 35 35 H 1.09002 * 109.47049 * 66.40057 * 16 15 14 36 36 H 0.96697 * 117.00156 * 179.97438 * 19 17 16 37 37 H 1.09004 * 110.51071 * 237.42704 * 20 15 14 38 38 H 1.08994 * 110.51446 * 0.02562 * 20 15 14 39 39 H 1.08996 * 110.37431 * 94.84772 * 21 20 15 40 40 H 1.08996 * 110.37457 * 217.19362 * 21 20 15 41 41 H 1.08994 * 110.37234 * 200.65353 * 23 22 21 42 42 H 1.08998 * 110.37170 * 78.31720 * 23 22 21 43 43 H 1.08003 * 119.99769 * 359.97438 * 25 24 9 44 44 H 1.08004 * 120.00586 * 180.23202 * 26 25 24 45 45 H 1.08002 * 120.00195 * 179.72854 * 27 26 25 46 46 H 1.08007 * 120.00277 * 179.97438 * 28 27 26 47 47 H 1.07991 * 120.00406 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0827 9 6 1.2555 -2.4965 -0.1171 10 1 0.3849 -2.3588 -0.7585 11 6 2.1730 -3.5599 -0.7240 12 6 2.5233 -3.1734 -2.1379 13 8 2.0821 -2.1486 -2.6135 14 7 3.3268 -3.9666 -2.8739 15 6 3.5786 -3.6498 -4.2818 16 6 2.2740 -3.6880 -5.0802 17 6 1.5898 -5.0126 -4.8614 18 8 2.1447 -5.8827 -4.2328 19 8 0.3617 -5.2242 -5.3602 20 6 4.2534 -2.2660 -4.4130 21 6 5.6130 -2.5729 -5.0790 22 8 5.8805 -3.9541 -4.7521 23 6 4.6105 -4.6291 -4.8840 24 6 0.8064 -2.9419 1.2508 25 6 1.7312 -3.0918 2.2671 26 6 1.3187 -3.4957 3.5230 27 6 -0.0174 -3.7599 3.7599 28 6 -0.9415 -3.6150 2.7421 29 6 -0.5296 -3.2065 1.4873 30 1 -0.4850 0.8401 0.0004 31 1 1.6616 -4.5225 -0.7266 32 1 3.0846 -3.6344 -0.1312 33 1 3.7384 -4.7473 -2.4714 34 1 2.4931 -3.5629 -6.1405 35 1 1.6203 -2.8820 -4.7468 36 1 -0.0364 -6.0897 -5.1944 37 1 3.6575 -1.6090 -5.0466 38 1 4.4000 -1.8178 -3.4303 39 1 5.5439 -2.4451 -6.1592 40 1 6.3906 -1.9286 -4.6687 41 1 4.6179 -5.5642 -4.3240 42 1 4.3877 -4.8166 -5.9343 43 1 2.7758 -2.8901 2.0807 44 1 2.0407 -3.6093 4.3181 45 1 -0.3392 -4.0797 4.7400 46 1 -1.9854 -3.8217 2.9270 47 1 -1.2515 -3.0938 0.6921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:17 Heat of formation + Delta-G solvation = -167.661783 kcal Electronic energy + Delta-G solvation = -31806.338415 eV Core-core repulsion = 27532.095429 eV Total energy + Delta-G solvation = -4274.242986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02279 -40.62899 -40.05555 -39.34368 -37.14144 -36.03711 -35.41543 -33.52224 -32.70415 -31.49383 -30.94953 -30.20822 -28.47984 -27.34789 -24.64729 -24.00207 -23.15063 -22.96110 -22.15111 -20.98860 -20.40439 -19.05318 -18.56000 -18.05545 -17.98833 -17.38728 -16.94408 -16.84856 -16.53659 -16.41397 -16.28919 -15.94630 -15.66997 -15.36766 -15.33424 -14.67536 -14.29818 -14.01968 -13.98898 -13.84648 -13.74685 -13.60311 -13.33639 -13.18314 -13.10301 -12.84116 -12.63266 -12.53405 -12.47569 -12.41554 -12.18391 -12.02544 -11.84574 -11.64539 -11.48642 -11.35434 -10.96347 -10.78989 -10.55883 -10.29627 -9.94081 -9.53366 -9.17682 -8.02912 -6.05845 0.78790 0.85509 1.22343 1.36693 1.39699 1.45440 1.95450 2.08369 2.35003 2.46714 2.93929 3.19975 3.35875 3.42136 3.67075 3.77606 4.09549 4.13658 4.23999 4.25545 4.35106 4.38271 4.40910 4.47794 4.49050 4.54974 4.60077 4.72851 4.73824 4.77553 4.81709 4.90401 4.93660 4.99514 5.16031 5.22152 5.37458 5.52491 5.61025 5.62991 5.65931 5.79206 5.80652 5.83903 5.96066 6.18605 6.42405 6.47421 6.75932 6.99361 7.00563 7.55808 7.59109 9.06064 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.004012 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.752276 B = 6977.956729 C = 8235.479629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.044 0.956 9 C 0.091 3.909 10 H 0.018 0.982 11 C -0.119 4.119 12 C 0.516 3.484 13 O -0.540 6.540 14 N -0.713 5.713 15 C 0.159 3.841 16 C -0.124 4.124 17 C 0.485 3.515 18 O -0.527 6.527 19 O -0.518 6.518 20 C -0.152 4.152 21 C 0.048 3.952 22 O -0.388 6.388 23 C 0.057 3.943 24 C -0.041 4.041 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.149 4.149 28 C -0.130 4.130 29 C -0.139 4.139 30 H 0.253 0.747 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.408 0.592 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.426 0.574 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -12.133 -8.880 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.072 3.928 10 H 0.036 0.964 11 C -0.159 4.159 12 C 0.303 3.697 13 O -0.416 6.416 14 N -0.368 5.368 15 C 0.071 3.929 16 C -0.162 4.162 17 C 0.328 3.672 18 O -0.417 6.417 19 O -0.332 6.332 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.307 6.307 23 C -0.020 4.020 24 C -0.042 4.042 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.167 4.167 28 C -0.148 4.148 29 C -0.158 4.158 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.244 0.756 34 H 0.166 0.834 35 H 0.118 0.882 36 H 0.287 0.713 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.929 -11.224 -9.066 15.598 hybrid contribution -0.365 0.651 0.287 0.800 sum 5.564 -10.572 -8.779 14.825 Atomic orbital electron populations 1.70064 1.06968 1.26321 1.52122 1.25454 0.95309 1.01524 0.95256 0.85926 0.79153 0.81176 0.77567 1.21164 1.21491 1.19189 1.20915 0.91951 0.90831 1.48036 0.93761 1.17523 0.94423 0.91792 0.89035 0.96414 1.21657 1.01669 0.99776 0.92767 1.20811 0.77742 0.82869 0.88292 1.90706 1.53275 1.24810 1.72772 1.46044 1.50469 1.30102 1.10151 1.21416 0.93611 0.95900 0.81941 1.21885 0.96518 0.93072 1.04726 1.23374 0.79407 0.89743 0.74674 1.90657 1.66061 1.46529 1.38435 1.84514 1.31686 1.44093 1.72904 1.23236 0.97188 0.96306 1.02335 1.23588 0.95939 0.82833 1.00498 1.89144 1.29665 1.21234 1.90669 1.23721 0.81254 0.95386 1.01599 1.20545 0.93245 0.92303 0.98103 1.21024 0.99463 1.00765 0.93399 1.21355 0.96722 0.99927 0.96621 1.21245 0.93194 1.02748 0.99476 1.21279 1.00133 1.00378 0.92975 1.21058 0.95767 1.01380 0.97546 0.93785 0.90125 0.89151 0.75604 0.83383 0.88171 0.71258 0.89066 0.92396 0.89230 0.88498 0.87715 0.88769 0.86916 0.84321 0.83942 0.85101 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.36 13.00 21.45 0.28 -55.08 16 2 C 0.02 1.33 5.45 84.66 0.46 1.79 16 3 Si 0.93 46.23 29.54 68.60 2.03 48.25 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.48 -26.18 6.33 25.60 0.16 -26.02 16 8 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 9 C 0.09 4.51 1.54 -12.29 -0.02 4.49 16 10 H 0.02 1.02 7.23 -2.38 -0.02 1.01 16 11 C -0.12 -4.71 4.96 29.85 0.15 -4.56 16 12 C 0.52 20.09 6.79 87.66 0.60 20.69 16 13 O -0.54 -25.44 12.37 -3.05 -0.04 -25.48 16 14 N -0.71 -21.22 3.69 -418.33 -1.55 -22.77 16 15 C 0.16 3.95 0.51 4.62 0.00 3.95 16 16 C -0.12 -2.87 4.37 29.85 0.13 -2.74 16 17 C 0.48 11.55 7.94 71.23 0.57 12.12 16 18 O -0.53 -13.91 14.70 21.96 0.32 -13.58 16 19 O -0.52 -10.44 13.42 -51.42 -0.69 -11.13 16 20 C -0.15 -3.95 5.50 31.61 0.17 -3.78 16 21 C 0.05 0.96 7.63 72.49 0.55 1.51 16 22 O -0.39 -9.07 11.65 -148.98 -1.74 -10.80 16 23 C 0.06 1.16 5.90 72.49 0.43 1.59 16 24 C -0.04 -1.89 4.77 -19.87 -0.09 -1.99 16 25 C -0.13 -5.22 8.87 22.27 0.20 -5.03 16 26 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 27 C -0.15 -4.83 10.05 22.27 0.22 -4.61 16 28 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 29 C -0.14 -6.12 9.67 22.27 0.22 -5.90 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.09 3.31 7.84 -2.39 -0.02 3.29 16 33 H 0.41 10.77 8.26 -92.71 -0.77 10.01 16 34 H 0.15 2.22 7.99 -2.39 -0.02 2.20 16 35 H 0.10 3.01 6.74 -2.39 -0.02 2.99 16 36 H 0.43 4.90 9.10 -74.06 -0.67 4.22 16 37 H 0.09 2.24 7.73 -2.39 -0.02 2.22 16 38 H 0.06 1.95 7.20 -2.39 -0.02 1.93 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 2.17 7.27 -2.39 -0.02 2.16 16 42 H 0.09 1.44 7.76 -2.39 -0.02 1.42 16 43 H 0.11 4.47 7.79 -2.91 -0.02 4.45 16 44 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 45 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.09 4.29 7.95 -2.92 -0.02 4.27 16 Total: -1.00 -75.09 387.68 2.38 -72.71 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.43 Total: 35.00 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 4.19 Total: -17.12 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.27 Total: -77.85 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -2.14 Total: -60.99 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -75.09 2.38 -72.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.955 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds