Wall clock time and date at job start Wed Apr 1 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00555 * 2 1 4 4 H 1.48499 * 109.47545 * 270.27573 * 3 2 1 5 5 H 1.48505 * 109.46903 * 30.27676 * 3 2 1 6 6 H 1.48499 * 109.47203 * 150.27286 * 3 2 1 7 7 C 1.37881 * 119.99440 * 180.27403 * 2 1 3 8 8 H 1.08002 * 120.00162 * 175.50730 * 7 2 1 9 9 C 1.50703 * 120.00236 * 355.51013 * 7 2 1 10 10 H 1.08994 * 109.47347 * 183.26819 * 9 7 2 11 11 C 1.53000 * 109.46683 * 303.26801 * 9 7 2 12 12 C 1.50691 * 109.47399 * 294.99985 * 11 9 7 13 13 O 1.21280 * 120.00232 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00127 * 180.02562 * 12 11 9 15 15 C 1.46506 * 120.00148 * 174.94669 * 14 12 11 16 16 C 1.52996 * 110.45697 * 65.21259 * 15 14 12 17 17 C 1.50693 * 109.47189 * 55.94162 * 16 15 14 18 18 O 1.20823 * 120.00443 * 4.04358 * 17 16 15 19 19 O 1.34231 * 120.00077 * 184.04119 * 17 16 15 20 20 C 1.54510 * 110.51053 * 302.60352 * 15 14 12 21 21 C 1.54793 * 103.91207 * 241.38792 * 20 15 14 22 22 O 1.44425 * 104.85663 * 23.88506 * 21 20 15 23 23 C 1.44420 * 105.27487 * 319.53387 * 22 21 20 24 24 C 1.50700 * 109.46941 * 63.26900 * 9 7 2 25 25 C 1.38235 * 120.00034 * 89.12687 * 24 9 7 26 26 C 1.38245 * 119.99620 * 179.74207 * 25 24 9 27 27 C 1.38227 * 120.00158 * 0.52760 * 26 25 24 28 28 C 1.38243 * 119.99939 * 359.75047 * 27 26 25 29 29 C 1.38233 * 119.99907 * 359.97407 * 28 27 26 30 30 H 0.97003 * 119.99312 * 359.72992 * 1 2 3 31 31 H 1.09002 * 109.46865 * 55.00488 * 11 9 7 32 32 H 1.09000 * 109.46742 * 174.99702 * 11 9 7 33 33 H 0.97001 * 119.99921 * 354.94042 * 14 12 11 34 34 H 1.09000 * 109.46923 * 175.94472 * 16 15 14 35 35 H 1.08998 * 109.46937 * 295.94383 * 16 15 14 36 36 H 0.96706 * 117.00393 * 180.02562 * 19 17 16 37 37 H 1.09005 * 110.51216 * 0.02562 * 20 15 14 38 38 H 1.09005 * 110.50957 * 122.70953 * 20 15 14 39 39 H 1.08996 * 110.30275 * 265.04972 * 21 20 15 40 40 H 1.08999 * 110.48076 * 142.80041 * 21 20 15 41 41 H 1.09004 * 110.37625 * 281.68650 * 23 22 21 42 42 H 1.09005 * 110.37210 * 159.34468 * 23 22 21 43 43 H 1.07995 * 119.99863 * 359.97438 * 25 24 9 44 44 H 1.08000 * 119.99307 * 180.29482 * 26 25 24 45 45 H 1.07992 * 120.00260 * 179.76486 * 27 26 25 46 46 H 1.07998 * 119.99658 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.99684 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0044 -1.1941 -0.0057 8 1 3.0820 -1.1954 -0.0790 9 6 1.2543 -2.4977 0.0902 10 1 1.9645 -3.3236 0.1291 11 6 0.3981 -2.5011 1.3582 12 6 1.2939 -2.4666 2.5694 13 8 2.4986 -2.4412 2.4322 14 7 0.7563 -2.4639 3.8053 15 6 1.6253 -2.5422 4.9823 16 6 2.5010 -1.2918 5.0845 17 6 1.6255 -0.0655 5.1030 18 8 0.4229 -0.1817 5.1146 19 8 2.1816 1.1562 5.1066 20 6 2.5013 -3.8136 4.9249 21 6 2.0815 -4.6119 6.1829 22 8 0.7492 -4.1463 6.4894 23 6 0.7837 -2.7200 6.2655 24 6 0.3657 -2.6558 -1.1166 25 6 0.8518 -3.2660 -2.2577 26 6 0.0349 -3.4158 -3.3629 27 6 -1.2646 -2.9457 -3.3306 28 6 -1.7490 -2.3304 -2.1914 29 6 -0.9339 -2.1857 -1.0843 30 1 -0.4849 0.8401 0.0040 31 1 -0.2507 -1.6252 1.3609 32 1 -0.2113 -3.4046 1.3826 33 1 -0.2059 -2.4101 3.9156 34 1 3.0878 -1.3333 6.0021 35 1 3.1714 -1.2467 4.2262 36 1 1.5794 1.9128 5.1190 37 1 2.2882 -4.3838 4.0206 38 1 3.5583 -3.5516 4.9717 39 1 2.7582 -4.3976 7.0100 40 1 2.0703 -5.6809 5.9701 41 1 1.2614 -2.2154 7.1054 42 1 -0.2248 -2.3351 6.1142 43 1 1.8686 -3.6290 -2.2845 44 1 0.4133 -3.8968 -4.2527 45 1 -1.9016 -3.0593 -4.1952 46 1 -2.7641 -1.9627 -2.1664 47 1 -1.3124 -1.7053 -0.1942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:22 Heat of formation + Delta-G solvation = -138.910154 kcal Electronic energy + Delta-G solvation = -32284.104821 eV Core-core repulsion = 28011.108599 eV Total energy + Delta-G solvation = -4272.996222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83447 -39.41870 -38.56859 -37.79416 -36.02639 -34.65976 -33.94530 -31.62312 -30.97284 -29.95532 -29.77390 -28.36467 -27.35360 -25.74599 -23.16312 -22.69374 -21.91059 -21.46346 -20.63238 -19.46107 -18.97646 -17.93839 -16.91571 -16.83300 -16.18629 -15.86727 -15.82021 -15.49781 -15.29909 -15.20703 -14.95743 -14.45221 -14.05277 -13.80590 -13.59132 -13.05938 -12.89516 -12.88682 -12.81450 -12.29471 -12.20157 -12.10934 -11.65636 -11.60027 -11.44254 -11.39304 -11.36335 -11.18015 -11.00885 -10.93278 -10.79735 -10.43488 -10.32499 -10.16455 -9.93868 -9.85064 -9.26016 -9.17759 -8.77530 -8.56184 -8.38954 -7.77113 -7.41924 -5.95928 -4.08108 2.38445 2.52709 2.61914 3.13226 3.27118 3.34161 3.40895 3.60275 3.71719 3.89296 4.41591 4.47189 4.72658 4.75592 5.00764 5.03264 5.12058 5.24627 5.31334 5.34375 5.49874 5.65052 5.72619 5.75210 5.83753 5.90550 5.93948 6.02433 6.08689 6.14826 6.39168 6.47720 6.59310 6.63503 6.66459 6.74040 6.81051 7.04985 7.14605 7.17880 7.29643 7.48326 7.56536 7.72125 7.93089 8.02994 8.10560 8.21316 8.25183 8.35181 8.88999 9.15625 9.55104 10.95797 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.004274 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.211699 B = 6549.659396 C = 7960.672709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.469 4.469 8 H 0.059 0.941 9 C 0.090 3.910 10 H 0.037 0.963 11 C -0.137 4.137 12 C 0.526 3.474 13 O -0.527 6.527 14 N -0.727 5.727 15 C 0.165 3.835 16 C -0.125 4.125 17 C 0.485 3.515 18 O -0.509 6.509 19 O -0.519 6.519 20 C -0.149 4.149 21 C 0.043 3.957 22 O -0.372 6.372 23 C 0.049 3.951 24 C -0.029 4.029 25 C -0.131 4.131 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.145 4.145 29 C -0.063 4.063 30 H 0.260 0.740 31 H 0.127 0.873 32 H 0.054 0.946 33 H 0.401 0.599 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.408 0.592 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -4.473 11.019 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.507 4.507 8 H 0.077 0.923 9 C 0.071 3.929 10 H 0.055 0.945 11 C -0.177 4.177 12 C 0.316 3.684 13 O -0.402 6.402 14 N -0.382 5.382 15 C 0.077 3.923 16 C -0.163 4.163 17 C 0.327 3.673 18 O -0.397 6.397 19 O -0.331 6.331 20 C -0.188 4.188 21 C -0.034 4.034 22 O -0.290 6.290 23 C -0.028 4.028 24 C -0.030 4.030 25 C -0.149 4.149 26 C -0.162 4.162 27 C -0.171 4.171 28 C -0.164 4.164 29 C -0.081 4.081 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.236 0.764 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.266 0.734 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.147 -4.825 10.970 12.039 hybrid contribution -0.194 2.021 -0.287 2.050 sum 0.953 -2.804 10.683 11.086 Atomic orbital electron populations 1.69704 1.05523 1.26011 1.51333 1.24894 0.94870 0.98859 0.95369 0.86652 0.80153 0.83655 0.78050 1.20846 1.21467 1.19876 1.20959 0.93090 0.89342 1.47306 0.92313 1.17612 0.91596 0.96917 0.86783 0.94488 1.21889 0.99431 1.03312 0.93032 1.21149 0.89850 0.73667 0.83753 1.90572 1.15478 1.48039 1.86091 1.46248 1.09816 1.77774 1.04353 1.21169 0.90661 0.92847 0.87631 1.21914 0.98920 0.88651 1.06840 1.23302 0.88037 0.84556 0.71382 1.90663 1.16428 1.87127 1.45483 1.84527 1.45815 1.16995 1.85716 1.23308 1.00468 0.95369 0.99609 1.23542 0.84336 0.99753 0.95795 1.89154 1.29861 1.20829 1.89175 1.23721 1.02143 0.82565 0.94387 1.20315 0.93707 0.92401 0.96572 1.20882 0.98699 1.01576 0.93780 1.20781 0.94697 1.02869 0.97888 1.20760 0.95988 1.02546 0.97834 1.21048 0.99232 1.01411 0.94695 1.21396 0.93255 0.94452 0.99010 0.92992 0.85549 0.92810 0.76380 0.87540 0.85113 0.73391 0.89190 0.89501 0.92297 0.88949 0.91597 0.87496 0.87754 0.88171 0.88373 0.88161 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.63 7.86 55.43 0.44 -22.19 16 2 C 0.06 1.56 5.12 -17.82 -0.09 1.47 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.47 -12.32 7.27 -34.44 -0.25 -12.57 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.09 2.12 1.97 -92.92 -0.18 1.94 16 10 H 0.04 0.88 7.90 -51.93 -0.41 0.47 16 11 C -0.14 -2.88 4.13 -27.89 -0.12 -3.00 16 12 C 0.53 10.48 6.68 -10.99 -0.07 10.41 16 13 O -0.53 -11.65 12.39 5.56 0.07 -11.58 16 14 N -0.73 -11.81 3.84 -46.16 -0.18 -11.99 16 15 C 0.17 2.25 0.51 -130.25 -0.07 2.19 16 16 C -0.12 -1.69 4.43 -27.89 -0.12 -1.81 16 17 C 0.48 7.26 7.94 36.00 0.29 7.55 16 18 O -0.51 -8.41 14.58 -18.75 -0.27 -8.68 16 19 O -0.52 -6.99 13.42 -39.26 -0.53 -7.52 16 20 C -0.15 -1.86 5.56 -24.99 -0.14 -2.00 16 21 C 0.04 0.45 7.64 38.10 0.29 0.74 16 22 O -0.37 -4.79 11.65 -35.23 -0.41 -5.20 16 23 C 0.05 0.59 5.82 37.94 0.22 0.81 16 24 C -0.03 -0.67 4.66 -104.62 -0.49 -1.16 16 25 C -0.13 -2.81 9.71 -39.58 -0.38 -3.19 16 26 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 27 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 28 C -0.15 -2.94 10.05 -39.58 -0.40 -3.33 16 29 C -0.06 -1.39 7.32 -39.58 -0.29 -1.68 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.13 2.90 4.85 -51.93 -0.25 2.65 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.40 6.22 8.18 -40.82 -0.33 5.88 16 34 H 0.11 1.05 8.05 -51.93 -0.42 0.64 16 35 H 0.13 2.13 6.58 -51.93 -0.34 1.78 16 36 H 0.41 3.93 9.10 45.56 0.41 4.35 16 37 H 0.09 1.32 7.17 -51.93 -0.37 0.95 16 38 H 0.09 1.00 7.73 -51.93 -0.40 0.59 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.68 7.81 -51.93 -0.41 0.28 16 42 H 0.11 1.36 7.17 -51.93 -0.37 0.99 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.14 3.21 5.10 -52.49 -0.27 2.94 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -30.52 375.97 -8.50 -39.03 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -5.67 Total: 16.39 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.60 Total: -10.16 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.26 Total: -34.19 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.14 Total: -32.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.52 -8.50 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.884 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds