Wall clock time and date at job start Wed Apr 1 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00555 * 2 1 4 4 H 1.48499 * 109.47545 * 270.27573 * 3 2 1 5 5 H 1.48505 * 109.46903 * 30.27676 * 3 2 1 6 6 H 1.48499 * 109.47203 * 150.27286 * 3 2 1 7 7 C 1.37881 * 119.99440 * 180.27403 * 2 1 3 8 8 H 1.08002 * 120.00162 * 175.50730 * 7 2 1 9 9 C 1.50703 * 120.00236 * 355.51013 * 7 2 1 10 10 H 1.08994 * 109.47347 * 183.26819 * 9 7 2 11 11 C 1.53000 * 109.46683 * 303.26801 * 9 7 2 12 12 C 1.50691 * 109.47399 * 294.99985 * 11 9 7 13 13 O 1.21280 * 120.00232 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00127 * 180.02562 * 12 11 9 15 15 C 1.46506 * 120.00148 * 174.94669 * 14 12 11 16 16 C 1.52996 * 110.45697 * 65.21259 * 15 14 12 17 17 C 1.50693 * 109.47189 * 55.94162 * 16 15 14 18 18 O 1.20823 * 120.00443 * 4.04358 * 17 16 15 19 19 O 1.34231 * 120.00077 * 184.04119 * 17 16 15 20 20 C 1.54510 * 110.51053 * 302.60352 * 15 14 12 21 21 C 1.54793 * 103.91207 * 241.38792 * 20 15 14 22 22 O 1.44425 * 104.85663 * 23.88506 * 21 20 15 23 23 C 1.44420 * 105.27487 * 319.53387 * 22 21 20 24 24 C 1.50700 * 109.46941 * 63.26900 * 9 7 2 25 25 C 1.38235 * 120.00034 * 89.12687 * 24 9 7 26 26 C 1.38245 * 119.99620 * 179.74207 * 25 24 9 27 27 C 1.38227 * 120.00158 * 0.52760 * 26 25 24 28 28 C 1.38243 * 119.99939 * 359.75047 * 27 26 25 29 29 C 1.38233 * 119.99907 * 359.97407 * 28 27 26 30 30 H 0.97003 * 119.99312 * 359.72992 * 1 2 3 31 31 H 1.09002 * 109.46865 * 55.00488 * 11 9 7 32 32 H 1.09000 * 109.46742 * 174.99702 * 11 9 7 33 33 H 0.97001 * 119.99921 * 354.94042 * 14 12 11 34 34 H 1.09000 * 109.46923 * 175.94472 * 16 15 14 35 35 H 1.08998 * 109.46937 * 295.94383 * 16 15 14 36 36 H 0.96706 * 117.00393 * 180.02562 * 19 17 16 37 37 H 1.09005 * 110.51216 * 0.02562 * 20 15 14 38 38 H 1.09005 * 110.50957 * 122.70953 * 20 15 14 39 39 H 1.08996 * 110.30275 * 265.04972 * 21 20 15 40 40 H 1.08999 * 110.48076 * 142.80041 * 21 20 15 41 41 H 1.09004 * 110.37625 * 281.68650 * 23 22 21 42 42 H 1.09005 * 110.37210 * 159.34468 * 23 22 21 43 43 H 1.07995 * 119.99863 * 359.97438 * 25 24 9 44 44 H 1.08000 * 119.99307 * 180.29482 * 26 25 24 45 45 H 1.07992 * 120.00260 * 179.76486 * 27 26 25 46 46 H 1.07998 * 119.99658 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.99684 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0044 -1.1941 -0.0057 8 1 3.0820 -1.1954 -0.0790 9 6 1.2543 -2.4977 0.0902 10 1 1.9645 -3.3236 0.1291 11 6 0.3981 -2.5011 1.3582 12 6 1.2939 -2.4666 2.5694 13 8 2.4986 -2.4412 2.4322 14 7 0.7563 -2.4639 3.8053 15 6 1.6253 -2.5422 4.9823 16 6 2.5010 -1.2918 5.0845 17 6 1.6255 -0.0655 5.1030 18 8 0.4229 -0.1817 5.1146 19 8 2.1816 1.1562 5.1066 20 6 2.5013 -3.8136 4.9249 21 6 2.0815 -4.6119 6.1829 22 8 0.7492 -4.1463 6.4894 23 6 0.7837 -2.7200 6.2655 24 6 0.3657 -2.6558 -1.1166 25 6 0.8518 -3.2660 -2.2577 26 6 0.0349 -3.4158 -3.3629 27 6 -1.2646 -2.9457 -3.3306 28 6 -1.7490 -2.3304 -2.1914 29 6 -0.9339 -2.1857 -1.0843 30 1 -0.4849 0.8401 0.0040 31 1 -0.2507 -1.6252 1.3609 32 1 -0.2113 -3.4046 1.3826 33 1 -0.2059 -2.4101 3.9156 34 1 3.0878 -1.3333 6.0021 35 1 3.1714 -1.2467 4.2262 36 1 1.5794 1.9128 5.1190 37 1 2.2882 -4.3838 4.0206 38 1 3.5583 -3.5516 4.9717 39 1 2.7582 -4.3976 7.0100 40 1 2.0703 -5.6809 5.9701 41 1 1.2614 -2.2154 7.1054 42 1 -0.2248 -2.3351 6.1142 43 1 1.8686 -3.6290 -2.2845 44 1 0.4133 -3.8968 -4.2527 45 1 -1.9016 -3.0593 -4.1952 46 1 -2.7641 -1.9627 -2.1664 47 1 -1.3124 -1.7053 -0.1942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:21 Heat of formation + Delta-G solvation = -158.059366 kcal Electronic energy + Delta-G solvation = -32284.935193 eV Core-core repulsion = 28011.108599 eV Total energy + Delta-G solvation = -4273.826594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00132 -40.63820 -40.04556 -39.25204 -37.16917 -36.19141 -35.45422 -33.13780 -32.63058 -31.38724 -30.92632 -29.96568 -28.48336 -27.53824 -24.54925 -24.00639 -23.11860 -22.92604 -22.06619 -21.02220 -20.35856 -19.07645 -18.45861 -18.07189 -17.73026 -17.31536 -16.90900 -16.85142 -16.78312 -16.41548 -16.29186 -15.82748 -15.56771 -15.43356 -15.06130 -14.71329 -14.45504 -14.04415 -13.84943 -13.76920 -13.51314 -13.45771 -13.21510 -13.16495 -13.04941 -12.83840 -12.71889 -12.57799 -12.50364 -12.22349 -12.18151 -12.03571 -11.86734 -11.68022 -11.49703 -11.04067 -11.03080 -10.77149 -10.57722 -10.19502 -9.90301 -9.39353 -9.11655 -7.91987 -6.10433 0.89430 1.01359 1.22190 1.32360 1.36124 1.45377 2.03689 2.09646 2.41327 2.43948 2.95775 3.20587 3.38200 3.42807 3.69686 3.77207 4.10739 4.20268 4.25699 4.34766 4.36477 4.41142 4.48597 4.51217 4.54644 4.69122 4.74638 4.79549 4.81457 4.83978 4.90386 4.94006 5.08905 5.12715 5.15931 5.38353 5.54599 5.59427 5.62308 5.68724 5.69598 5.82643 5.89107 5.95016 6.10771 6.36700 6.43529 6.58757 6.78462 6.86540 6.96477 7.51828 7.62608 8.94100 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.004274 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.211699 B = 6549.659396 C = 7960.672709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.033 3.967 3 Si 0.925 3.075 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.031 0.969 9 C 0.092 3.908 10 H 0.019 0.981 11 C -0.129 4.129 12 C 0.526 3.474 13 O -0.554 6.554 14 N -0.717 5.717 15 C 0.157 3.843 16 C -0.123 4.123 17 C 0.481 3.519 18 O -0.530 6.530 19 O -0.521 6.521 20 C -0.147 4.147 21 C 0.047 3.953 22 O -0.388 6.388 23 C 0.057 3.943 24 C -0.053 4.053 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.151 4.151 29 C -0.076 4.076 30 H 0.258 0.742 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.423 0.577 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.123 0.877 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -4.693 11.487 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.167 4.167 3 Si 0.753 3.247 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.073 3.927 10 H 0.037 0.963 11 C -0.169 4.169 12 C 0.314 3.686 13 O -0.432 6.432 14 N -0.370 5.370 15 C 0.069 3.931 16 C -0.161 4.161 17 C 0.324 3.676 18 O -0.420 6.420 19 O -0.334 6.334 20 C -0.186 4.186 21 C -0.030 4.030 22 O -0.307 6.307 23 C -0.020 4.020 24 C -0.054 4.054 25 C -0.168 4.168 26 C -0.160 4.160 27 C -0.166 4.166 28 C -0.169 4.169 29 C -0.095 4.095 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.240 0.760 34 H 0.166 0.834 35 H 0.122 0.878 36 H 0.284 0.716 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.141 0.859 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.502 -5.036 11.462 12.529 hybrid contribution -0.007 2.061 -0.472 2.114 sum 0.494 -2.975 10.990 11.396 Atomic orbital electron populations 1.69828 1.05489 1.25972 1.51043 1.25254 0.95610 1.00256 0.95539 0.86070 0.79078 0.81879 0.77687 1.21022 1.20588 1.20872 1.20922 0.91940 0.91059 1.48270 0.95033 1.17502 0.91691 0.94945 0.88560 0.96302 1.21704 0.99088 1.03146 0.92978 1.20910 0.89226 0.73786 0.84631 1.90557 1.16356 1.49603 1.86667 1.46105 1.10341 1.76297 1.04262 1.21466 0.90877 0.93577 0.87147 1.21945 0.98519 0.87975 1.07676 1.23591 0.87927 0.85232 0.70843 1.90654 1.17236 1.87499 1.46567 1.84498 1.46346 1.17283 1.85291 1.23270 1.00916 0.94728 0.99648 1.23678 0.83805 0.99943 0.95529 1.89142 1.31280 1.21102 1.89174 1.23685 1.01605 0.82612 0.94080 1.20321 0.94226 0.94088 0.96725 1.21078 0.99323 1.02075 0.94320 1.21149 0.94671 1.02077 0.98106 1.21181 0.96168 1.00836 0.98440 1.21348 1.00069 1.01130 0.94376 1.21325 0.93375 0.95194 0.99579 0.93209 0.87142 0.91406 0.76021 0.83374 0.87845 0.71631 0.91920 0.88469 0.89308 0.87930 0.89020 0.88328 0.87709 0.84998 0.84745 0.85931 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.77 7.86 21.45 0.17 -45.61 16 2 C 0.03 1.74 5.12 84.66 0.43 2.17 16 3 Si 0.92 44.18 29.54 68.60 2.03 46.21 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 7 C -0.48 -26.44 7.27 25.60 0.19 -26.26 16 8 H 0.03 1.84 7.82 -2.91 -0.02 1.82 16 9 C 0.09 4.53 1.97 -12.28 -0.02 4.51 16 10 H 0.02 0.95 7.90 -2.39 -0.02 0.93 16 11 C -0.13 -5.66 4.13 29.85 0.12 -5.53 16 12 C 0.53 21.70 6.68 87.65 0.59 22.29 16 13 O -0.55 -25.61 12.39 -3.03 -0.04 -25.65 16 14 N -0.72 -23.66 3.84 -418.34 -1.61 -25.27 16 15 C 0.16 4.15 0.51 4.62 0.00 4.16 16 16 C -0.12 -3.21 4.43 29.84 0.13 -3.07 16 17 C 0.48 14.01 7.94 71.23 0.57 14.58 16 18 O -0.53 -17.24 14.58 21.97 0.32 -16.92 16 19 O -0.52 -13.51 13.42 -51.42 -0.69 -14.20 16 20 C -0.15 -3.56 5.56 31.72 0.18 -3.39 16 21 C 0.05 0.88 7.64 72.59 0.55 1.43 16 22 O -0.39 -9.24 11.65 -148.98 -1.74 -10.97 16 23 C 0.06 1.28 5.82 72.49 0.42 1.71 16 24 C -0.05 -2.47 4.66 -19.87 -0.09 -2.56 16 25 C -0.15 -6.41 9.71 22.27 0.22 -6.20 16 26 C -0.14 -5.21 10.05 22.27 0.22 -4.99 16 27 C -0.15 -5.22 10.05 22.27 0.22 -5.00 16 28 C -0.15 -5.83 10.05 22.27 0.22 -5.61 16 29 C -0.08 -3.38 7.32 22.27 0.16 -3.22 16 30 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 31 H 0.11 5.25 4.85 -2.39 -0.01 5.24 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.40 12.74 8.18 -92.71 -0.76 11.98 16 34 H 0.15 2.53 8.05 -2.39 -0.02 2.51 16 35 H 0.10 3.40 6.58 -2.39 -0.02 3.38 16 36 H 0.42 7.72 9.10 -74.05 -0.67 7.05 16 37 H 0.06 1.87 7.17 -2.38 -0.02 1.86 16 38 H 0.10 2.12 7.73 -2.38 -0.02 2.11 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.61 7.81 -2.38 -0.02 1.59 16 42 H 0.10 2.40 7.17 -2.38 -0.02 2.38 16 43 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 45 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 47 H 0.13 5.94 5.10 -2.91 -0.01 5.92 16 Total: -1.00 -67.10 375.97 2.15 -64.95 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.41 Total: 42.43 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.12 Total: -14.98 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -1.44 Total: -70.87 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -2.14 Total: -67.74 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.10 2.15 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.113 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds