Wall clock time and date at job start Wed Apr 1 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48498 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47357 * 300.00101 * 3 2 1 6 6 H 1.48503 * 109.47510 * 60.00387 * 3 2 1 7 7 C 1.38951 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99786 * 198.75473 * 7 2 1 9 9 N 1.37097 * 120.00121 * 18.48032 * 7 2 1 10 10 C 1.46492 * 119.99869 * 37.18104 * 9 7 2 11 11 C 1.53005 * 109.47147 * 93.67021 * 10 9 7 12 12 C 1.50694 * 109.47480 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99984 * 359.97438 * 12 11 10 14 14 O 1.34220 * 120.00305 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99791 * 217.18932 * 9 7 2 16 16 O 1.21292 * 119.99788 * 180.02562 * 15 9 7 17 17 C 1.50701 * 119.99907 * 359.97438 * 15 9 7 18 18 H 1.09000 * 110.54900 * 55.70888 * 17 15 9 19 19 C 1.54990 * 110.62470 * 292.82680 * 17 15 9 20 20 C 1.54981 * 102.01453 * 204.59865 * 19 17 15 21 21 C 1.54102 * 104.25528 * 20.66267 * 20 19 17 22 22 H 1.08998 * 110.00299 * 242.67518 * 21 20 19 23 23 C 1.52998 * 109.87760 * 121.59208 * 21 20 19 24 24 C 1.50692 * 109.47125 * 175.71775 * 23 21 20 25 25 C 1.38234 * 120.00156 * 269.72823 * 24 23 21 26 26 C 1.38238 * 120.00027 * 179.81252 * 25 24 23 27 27 C 1.38228 * 119.99962 * 0.41320 * 26 25 24 28 28 C 1.38236 * 120.00268 * 359.81833 * 27 26 25 29 29 C 1.38237 * 119.99736 * 359.97438 * 28 27 26 30 30 O 1.43745 * 107.28835 * 2.16976 * 21 20 19 31 31 H 0.96994 * 120.00565 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47138 * 213.66136 * 10 9 7 33 33 H 1.08999 * 109.48015 * 333.66897 * 10 9 7 34 34 H 1.08997 * 109.46470 * 299.99895 * 11 10 9 35 35 H 1.08996 * 109.46933 * 59.99608 * 11 10 9 36 36 H 0.96701 * 117.00558 * 179.97438 * 14 12 11 37 37 H 1.09002 * 110.90531 * 322.67728 * 19 17 15 38 38 H 1.09006 * 110.90488 * 86.27482 * 19 17 15 39 39 H 1.09009 * 110.33924 * 262.02501 * 20 19 17 40 40 H 1.08992 * 110.57270 * 139.42453 * 20 19 17 41 41 H 1.09006 * 109.47044 * 295.71553 * 23 21 20 42 42 H 1.08995 * 109.47374 * 55.71313 * 23 21 20 43 43 H 1.07999 * 119.99895 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.99937 * 180.20697 * 26 25 24 45 45 H 1.08009 * 120.00283 * 179.79287 * 27 26 25 46 46 H 1.07998 * 120.00263 * 179.97438 * 28 27 26 47 47 H 1.07996 * 119.99762 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0459 -1.2282 0.3002 9 7 1.3765 -2.3599 -0.3774 10 6 0.3963 -2.3375 -1.4658 11 6 1.0904 -2.6844 -2.7845 12 6 0.0820 -2.6619 -3.9041 13 8 -1.0735 -2.3963 -3.6712 14 8 0.4671 -2.9381 -5.1599 15 6 1.6565 -3.5174 0.2536 16 8 1.0974 -4.5407 -0.0801 17 6 2.6652 -3.5404 1.3731 18 1 2.3913 -2.8262 2.1496 19 6 4.0869 -3.2412 0.8331 20 6 4.9858 -3.9181 1.8988 21 6 4.0573 -4.9383 2.5857 22 1 3.9414 -4.6863 3.6398 23 6 4.6398 -6.3464 2.4487 24 6 3.7814 -7.3217 3.2121 25 6 4.0567 -7.5931 4.5393 26 6 3.2668 -8.4848 5.2407 27 6 2.2068 -9.1114 4.6125 28 6 1.9344 -8.8436 3.2840 29 6 2.7217 -7.9487 2.5838 30 8 2.7832 -4.8698 1.9238 31 1 -0.4851 0.8399 0.0004 32 1 -0.3871 -3.0682 -1.2645 33 1 -0.0443 -1.3431 -1.5378 34 1 1.8737 -1.9537 -2.9858 35 1 1.5308 -3.6788 -2.7126 36 1 -0.2155 -2.9117 -5.8443 37 1 4.2352 -3.6973 -0.1457 38 1 4.2692 -2.1673 0.7920 39 1 5.3411 -3.1806 2.6186 40 1 5.8259 -4.4255 1.4248 41 1 4.6629 -6.6292 1.3962 42 1 5.6526 -6.3615 2.8512 43 1 4.8873 -7.1066 5.0289 44 1 3.4798 -8.6943 6.2785 45 1 1.5917 -9.8107 5.1596 46 1 1.1065 -9.3336 2.7931 47 1 2.5091 -7.7398 1.5458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:53 Heat of formation + Delta-G solvation = -146.616875 kcal Electronic energy + Delta-G solvation = -30875.457009 eV Core-core repulsion = 26602.126598 eV Total energy + Delta-G solvation = -4273.330410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.93143 -39.70289 -38.92723 -37.75176 -35.79265 -34.94275 -33.26390 -31.99868 -31.83599 -30.73500 -30.69150 -29.13896 -26.10562 -25.27026 -23.87972 -22.49063 -22.19661 -21.15517 -20.60063 -20.43626 -19.15447 -17.81811 -17.15817 -16.84120 -16.34382 -16.06571 -15.74438 -15.53957 -15.27683 -15.01125 -14.66663 -14.60211 -14.17497 -13.85337 -13.56918 -13.25821 -13.14648 -13.08473 -12.78256 -12.61356 -12.52230 -12.16127 -12.05070 -11.87599 -11.56639 -11.33158 -11.31170 -11.15661 -11.09455 -11.07021 -10.83767 -10.65705 -10.45756 -10.43567 -10.28700 -10.14386 -9.99690 -9.34459 -9.20606 -8.76968 -8.51176 -8.40380 -7.64691 -6.45681 -4.21305 1.48440 1.56137 2.66739 3.03165 3.14543 3.17193 3.39104 3.69963 3.91268 4.01215 4.11366 4.69874 4.86163 4.91963 4.94869 5.05897 5.09025 5.13702 5.21932 5.29693 5.45066 5.58530 5.59941 5.64000 5.68976 5.77014 5.79307 5.83344 5.92564 5.97621 6.04468 6.13630 6.18812 6.22074 6.29821 6.32203 6.37242 6.51257 6.57278 6.67046 6.80285 6.81769 6.86099 7.15499 7.26742 7.35024 7.46590 7.79321 8.25018 8.30978 8.96914 9.38576 9.81275 10.55213 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.003136 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.782746 B = 8925.036817 C =10436.047413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.436 5.436 10 C 0.129 3.871 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.481 3.519 16 O -0.583 6.583 17 C 0.080 3.920 18 H 0.091 0.909 19 C -0.138 4.138 20 C -0.152 4.152 21 C 0.080 3.920 22 H 0.064 0.936 23 C -0.079 4.079 24 C -0.075 4.075 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.093 4.093 30 O -0.344 6.344 31 H 0.272 0.728 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -8.122 2.801 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.484 4.484 8 H 0.117 0.883 9 N -0.156 5.156 10 C 0.005 3.995 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.269 3.731 16 O -0.467 6.467 17 C 0.020 3.980 18 H 0.108 0.892 19 C -0.176 4.176 20 C -0.189 4.189 21 C 0.021 3.979 22 H 0.082 0.918 23 C -0.116 4.116 24 C -0.075 4.075 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.139 4.139 29 C -0.111 4.111 30 O -0.262 6.262 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.378 -8.590 3.006 13.069 hybrid contribution -0.027 1.220 -0.381 1.278 sum 9.351 -7.371 2.625 12.193 Atomic orbital electron populations 1.69900 1.06242 1.27987 1.44573 1.25447 0.95118 0.99998 0.95654 0.86107 0.79956 0.81897 0.78173 1.19036 1.20433 1.20583 1.19738 0.95843 0.84457 1.48328 0.88311 1.43264 1.37793 1.06465 1.28063 1.21190 0.90598 1.05555 0.82187 1.21871 0.97625 1.04961 0.91960 1.23778 0.89271 0.71712 0.82736 1.90707 1.20935 1.44569 1.83895 1.84586 1.46620 1.83273 1.19179 1.20025 0.84967 0.84578 0.83562 1.90561 1.54690 1.33827 1.67624 1.22697 0.94856 0.84819 0.95674 0.89179 1.23140 0.93333 1.02364 0.98784 1.23057 0.98824 0.98350 0.98708 1.22679 0.84752 0.93966 0.96461 0.91769 1.20835 0.97252 0.92638 1.00879 1.19807 0.96654 0.96882 0.94123 1.21000 1.00131 0.98845 0.94071 1.21037 0.96106 0.97822 0.99492 1.21089 0.97995 1.00492 0.95127 1.21173 0.99494 0.98552 0.94645 1.21176 0.94097 0.95089 1.00756 1.89013 1.34184 1.30690 1.72345 0.91769 0.91783 0.86339 0.87799 0.88476 0.74137 0.90797 0.88602 0.90689 0.90620 0.90142 0.90115 0.86471 0.86553 0.86592 0.86284 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.89 11.30 55.50 0.63 -21.26 16 2 C 0.05 1.07 5.00 -17.47 -0.09 0.98 16 3 Si 0.91 18.22 29.59 -169.99 -5.03 13.18 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.36 -8.27 8.43 -14.93 -0.13 -8.39 16 8 H 0.10 2.10 4.68 -52.48 -0.25 1.85 16 9 N -0.44 -10.40 2.53 -114.81 -0.29 -10.69 16 10 C 0.13 3.04 4.21 -4.04 -0.02 3.02 16 11 C -0.13 -2.43 6.12 -27.88 -0.17 -2.60 16 12 C 0.48 8.85 8.33 36.00 0.30 9.15 16 13 O -0.51 -10.99 16.74 -18.75 -0.31 -11.31 16 14 O -0.52 -7.47 13.42 -39.23 -0.53 -8.00 16 15 C 0.48 11.50 7.06 -10.99 -0.08 11.42 16 16 O -0.58 -15.59 16.21 -13.52 -0.22 -15.81 16 17 C 0.08 1.60 2.94 -26.83 -0.08 1.52 16 18 H 0.09 1.84 8.01 -51.93 -0.42 1.42 16 19 C -0.14 -2.22 5.83 -24.63 -0.14 -2.37 16 20 C -0.15 -1.93 6.65 -25.11 -0.17 -2.10 16 21 C 0.08 1.16 3.40 -26.16 -0.09 1.07 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.08 -0.99 4.84 -27.89 -0.13 -1.12 16 24 C -0.07 -1.02 4.99 -104.63 -0.52 -1.55 16 25 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 26 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 28 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 29 C -0.09 -1.39 9.47 -39.58 -0.37 -1.76 16 30 O -0.34 -6.73 10.06 -54.30 -0.55 -7.28 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16 33 H 0.12 3.03 5.38 -51.93 -0.28 2.75 16 34 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 35 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 36 H 0.40 3.77 9.10 45.56 0.41 4.18 16 37 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.10 1.50 5.91 -51.93 -0.31 1.19 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 41 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 42 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -31.77 391.94 -9.48 -41.25 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -5.82 Total: 14.42 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -3.27 Total: -0.42 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.34 Total: -31.95 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.61 Total: -42.38 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.77 -9.48 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.372 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds