Wall clock time and date at job start Wed Apr 1 2020 04:30:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86798 * 119.99599 * 2 1
4 4 H 1.48498 * 109.47194 * 180.02562 * 3 2 1
5 5 H 1.48504 * 109.47357 * 300.00101 * 3 2 1
6 6 H 1.48503 * 109.47510 * 60.00387 * 3 2 1
7 7 C 1.38951 * 120.00200 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99786 * 198.75473 * 7 2 1
9 9 N 1.37097 * 120.00121 * 18.48032 * 7 2 1
10 10 C 1.46492 * 119.99869 * 37.18104 * 9 7 2
11 11 C 1.53005 * 109.47147 * 93.67021 * 10 9 7
12 12 C 1.50694 * 109.47480 * 179.97438 * 11 10 9
13 13 O 1.20827 * 119.99984 * 359.97438 * 12 11 10
14 14 O 1.34220 * 120.00305 * 180.02562 * 12 11 10
15 15 C 1.34776 * 119.99791 * 217.18932 * 9 7 2
16 16 O 1.21292 * 119.99788 * 180.02562 * 15 9 7
17 17 C 1.50701 * 119.99907 * 359.97438 * 15 9 7
18 18 H 1.09000 * 110.54900 * 55.70888 * 17 15 9
19 19 C 1.54990 * 110.62470 * 292.82680 * 17 15 9
20 20 C 1.54981 * 102.01453 * 204.59865 * 19 17 15
21 21 C 1.54102 * 104.25528 * 20.66267 * 20 19 17
22 22 H 1.08998 * 110.00299 * 242.67518 * 21 20 19
23 23 C 1.52998 * 109.87760 * 121.59208 * 21 20 19
24 24 C 1.50692 * 109.47125 * 175.71775 * 23 21 20
25 25 C 1.38234 * 120.00156 * 269.72823 * 24 23 21
26 26 C 1.38238 * 120.00027 * 179.81252 * 25 24 23
27 27 C 1.38228 * 119.99962 * 0.41320 * 26 25 24
28 28 C 1.38236 * 120.00268 * 359.81833 * 27 26 25
29 29 C 1.38237 * 119.99736 * 359.97438 * 28 27 26
30 30 O 1.43745 * 107.28835 * 2.16976 * 21 20 19
31 31 H 0.96994 * 120.00565 * 359.97438 * 1 2 3
32 32 H 1.09006 * 109.47138 * 213.66136 * 10 9 7
33 33 H 1.08999 * 109.48015 * 333.66897 * 10 9 7
34 34 H 1.08997 * 109.46470 * 299.99895 * 11 10 9
35 35 H 1.08996 * 109.46933 * 59.99608 * 11 10 9
36 36 H 0.96701 * 117.00558 * 179.97438 * 14 12 11
37 37 H 1.09002 * 110.90531 * 322.67728 * 19 17 15
38 38 H 1.09006 * 110.90488 * 86.27482 * 19 17 15
39 39 H 1.09009 * 110.33924 * 262.02501 * 20 19 17
40 40 H 1.08992 * 110.57270 * 139.42453 * 20 19 17
41 41 H 1.09006 * 109.47044 * 295.71553 * 23 21 20
42 42 H 1.08995 * 109.47374 * 55.71313 * 23 21 20
43 43 H 1.07999 * 119.99895 * 359.97438 * 25 24 23
44 44 H 1.08002 * 119.99937 * 180.20697 * 26 25 24
45 45 H 1.08009 * 120.00283 * 179.79287 * 27 26 25
46 46 H 1.07998 * 120.00263 * 179.97438 * 28 27 26
47 47 H 1.07996 * 119.99762 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.7080 1.3466 -0.0006
5 1 1.8892 2.3965 -1.2125
6 1 1.8893 2.3965 1.2125
7 6 2.0089 -1.2033 -0.0005
8 1 3.0459 -1.2282 0.3002
9 7 1.3765 -2.3599 -0.3774
10 6 0.3963 -2.3375 -1.4658
11 6 1.0904 -2.6844 -2.7845
12 6 0.0820 -2.6619 -3.9041
13 8 -1.0735 -2.3963 -3.6712
14 8 0.4671 -2.9381 -5.1599
15 6 1.6565 -3.5174 0.2536
16 8 1.0974 -4.5407 -0.0801
17 6 2.6652 -3.5404 1.3731
18 1 2.3913 -2.8262 2.1496
19 6 4.0869 -3.2412 0.8331
20 6 4.9858 -3.9181 1.8988
21 6 4.0573 -4.9383 2.5857
22 1 3.9414 -4.6863 3.6398
23 6 4.6398 -6.3464 2.4487
24 6 3.7814 -7.3217 3.2121
25 6 4.0567 -7.5931 4.5393
26 6 3.2668 -8.4848 5.2407
27 6 2.2068 -9.1114 4.6125
28 6 1.9344 -8.8436 3.2840
29 6 2.7217 -7.9487 2.5838
30 8 2.7832 -4.8698 1.9238
31 1 -0.4851 0.8399 0.0004
32 1 -0.3871 -3.0682 -1.2645
33 1 -0.0443 -1.3431 -1.5378
34 1 1.8737 -1.9537 -2.9858
35 1 1.5308 -3.6788 -2.7126
36 1 -0.2155 -2.9117 -5.8443
37 1 4.2352 -3.6973 -0.1457
38 1 4.2692 -2.1673 0.7920
39 1 5.3411 -3.1806 2.6186
40 1 5.8259 -4.4255 1.4248
41 1 4.6629 -6.6292 1.3962
42 1 5.6526 -6.3615 2.8512
43 1 4.8873 -7.1066 5.0289
44 1 3.4798 -8.6943 6.2785
45 1 1.5917 -9.8107 5.1596
46 1 1.1065 -9.3336 2.7931
47 1 2.5091 -7.7398 1.5458
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601070394.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:53
Heat of formation + Delta-G solvation = -146.616875 kcal
Electronic energy + Delta-G solvation = -30875.457009 eV
Core-core repulsion = 26602.126598 eV
Total energy + Delta-G solvation = -4273.330410 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-39.93143 -39.70289 -38.92723 -37.75176 -35.79265 -34.94275 -33.26390 -31.99868
-31.83599 -30.73500 -30.69150 -29.13896 -26.10562 -25.27026 -23.87972 -22.49063
-22.19661 -21.15517 -20.60063 -20.43626 -19.15447 -17.81811 -17.15817 -16.84120
-16.34382 -16.06571 -15.74438 -15.53957 -15.27683 -15.01125 -14.66663 -14.60211
-14.17497 -13.85337 -13.56918 -13.25821 -13.14648 -13.08473 -12.78256 -12.61356
-12.52230 -12.16127 -12.05070 -11.87599 -11.56639 -11.33158 -11.31170 -11.15661
-11.09455 -11.07021 -10.83767 -10.65705 -10.45756 -10.43567 -10.28700 -10.14386
-9.99690 -9.34459 -9.20606 -8.76968 -8.51176 -8.40380 -7.64691 -6.45681
-4.21305 1.48440 1.56137 2.66739 3.03165 3.14543 3.17193 3.39104
3.69963 3.91268 4.01215 4.11366 4.69874 4.86163 4.91963 4.94869
5.05897 5.09025 5.13702 5.21932 5.29693 5.45066 5.58530 5.59941
5.64000 5.68976 5.77014 5.79307 5.83344 5.92564 5.97621 6.04468
6.13630 6.18812 6.22074 6.29821 6.32203 6.37242 6.51257 6.57278
6.67046 6.80285 6.81769 6.86099 7.15499 7.26742 7.35024 7.46590
7.79321 8.25018 8.30978 8.96914 9.38576 9.81275 10.55213
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.010932 B = 0.003136 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2560.782746 B = 8925.036817 C =10436.047413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.852 5.852
2 C 0.045 3.955
3 Si 0.913 3.087
4 H -0.266 1.266
5 H -0.279 1.279
6 H -0.280 1.280
7 C -0.356 4.356
8 H 0.100 0.900
9 N -0.436 5.436
10 C 0.129 3.871
11 C -0.125 4.125
12 C 0.483 3.517
13 O -0.514 6.514
14 O -0.525 6.525
15 C 0.481 3.519
16 O -0.583 6.583
17 C 0.080 3.920
18 H 0.091 0.909
19 C -0.138 4.138
20 C -0.152 4.152
21 C 0.080 3.920
22 H 0.064 0.936
23 C -0.079 4.079
24 C -0.075 4.075
25 C -0.122 4.122
26 C -0.127 4.127
27 C -0.129 4.129
28 C -0.121 4.121
29 C -0.093 4.093
30 O -0.344 6.344
31 H 0.272 0.728
32 H 0.064 0.936
33 H 0.119 0.881
34 H 0.104 0.896
35 H 0.097 0.903
36 H 0.401 0.599
37 H 0.073 0.927
38 H 0.096 0.904
39 H 0.074 0.926
40 H 0.075 0.925
41 H 0.080 0.920
42 H 0.080 0.920
43 H 0.117 0.883
44 H 0.116 0.884
45 H 0.116 0.884
46 H 0.119 0.881
47 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.007 -8.122 2.801 13.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.487 5.487
2 C -0.162 4.162
3 Si 0.739 3.261
4 H -0.190 1.190
5 H -0.204 1.204
6 H -0.206 1.206
7 C -0.484 4.484
8 H 0.117 0.883
9 N -0.156 5.156
10 C 0.005 3.995
11 C -0.164 4.164
12 C 0.325 3.675
13 O -0.401 6.401
14 O -0.337 6.337
15 C 0.269 3.731
16 O -0.467 6.467
17 C 0.020 3.980
18 H 0.108 0.892
19 C -0.176 4.176
20 C -0.189 4.189
21 C 0.021 3.979
22 H 0.082 0.918
23 C -0.116 4.116
24 C -0.075 4.075
25 C -0.140 4.140
26 C -0.145 4.145
27 C -0.147 4.147
28 C -0.139 4.139
29 C -0.111 4.111
30 O -0.262 6.262
31 H 0.082 0.918
32 H 0.082 0.918
33 H 0.137 0.863
34 H 0.122 0.878
35 H 0.115 0.885
36 H 0.259 0.741
37 H 0.092 0.908
38 H 0.114 0.886
39 H 0.093 0.907
40 H 0.094 0.906
41 H 0.099 0.901
42 H 0.099 0.901
43 H 0.135 0.865
44 H 0.134 0.866
45 H 0.134 0.866
46 H 0.137 0.863
47 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 9.378 -8.590 3.006 13.069
hybrid contribution -0.027 1.220 -0.381 1.278
sum 9.351 -7.371 2.625 12.193
Atomic orbital electron populations
1.69900 1.06242 1.27987 1.44573 1.25447 0.95118 0.99998 0.95654
0.86107 0.79956 0.81897 0.78173 1.19036 1.20433 1.20583 1.19738
0.95843 0.84457 1.48328 0.88311 1.43264 1.37793 1.06465 1.28063
1.21190 0.90598 1.05555 0.82187 1.21871 0.97625 1.04961 0.91960
1.23778 0.89271 0.71712 0.82736 1.90707 1.20935 1.44569 1.83895
1.84586 1.46620 1.83273 1.19179 1.20025 0.84967 0.84578 0.83562
1.90561 1.54690 1.33827 1.67624 1.22697 0.94856 0.84819 0.95674
0.89179 1.23140 0.93333 1.02364 0.98784 1.23057 0.98824 0.98350
0.98708 1.22679 0.84752 0.93966 0.96461 0.91769 1.20835 0.97252
0.92638 1.00879 1.19807 0.96654 0.96882 0.94123 1.21000 1.00131
0.98845 0.94071 1.21037 0.96106 0.97822 0.99492 1.21089 0.97995
1.00492 0.95127 1.21173 0.99494 0.98552 0.94645 1.21176 0.94097
0.95089 1.00756 1.89013 1.34184 1.30690 1.72345 0.91769 0.91783
0.86339 0.87799 0.88476 0.74137 0.90797 0.88602 0.90689 0.90620
0.90142 0.90115 0.86471 0.86553 0.86592 0.86284 0.85518
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -21.89 11.30 55.50 0.63 -21.26 16
2 C 0.05 1.07 5.00 -17.47 -0.09 0.98 16
3 Si 0.91 18.22 29.59 -169.99 -5.03 13.18 16
4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16
5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16
6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
7 C -0.36 -8.27 8.43 -14.93 -0.13 -8.39 16
8 H 0.10 2.10 4.68 -52.48 -0.25 1.85 16
9 N -0.44 -10.40 2.53 -114.81 -0.29 -10.69 16
10 C 0.13 3.04 4.21 -4.04 -0.02 3.02 16
11 C -0.13 -2.43 6.12 -27.88 -0.17 -2.60 16
12 C 0.48 8.85 8.33 36.00 0.30 9.15 16
13 O -0.51 -10.99 16.74 -18.75 -0.31 -11.31 16
14 O -0.52 -7.47 13.42 -39.23 -0.53 -8.00 16
15 C 0.48 11.50 7.06 -10.99 -0.08 11.42 16
16 O -0.58 -15.59 16.21 -13.52 -0.22 -15.81 16
17 C 0.08 1.60 2.94 -26.83 -0.08 1.52 16
18 H 0.09 1.84 8.01 -51.93 -0.42 1.42 16
19 C -0.14 -2.22 5.83 -24.63 -0.14 -2.37 16
20 C -0.15 -1.93 6.65 -25.11 -0.17 -2.10 16
21 C 0.08 1.16 3.40 -26.16 -0.09 1.07 16
22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
23 C -0.08 -0.99 4.84 -27.89 -0.13 -1.12 16
24 C -0.07 -1.02 4.99 -104.63 -0.52 -1.55 16
25 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16
26 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16
27 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16
28 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16
29 C -0.09 -1.39 9.47 -39.58 -0.37 -1.76 16
30 O -0.34 -6.73 10.06 -54.30 -0.55 -7.28 16
31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16
32 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16
33 H 0.12 3.03 5.38 -51.93 -0.28 2.75 16
34 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16
35 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16
36 H 0.40 3.77 9.10 45.56 0.41 4.18 16
37 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16
38 H 0.10 1.50 5.91 -51.93 -0.31 1.19 16
39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16
40 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16
41 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16
42 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16
43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16
44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16
45 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16
46 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16
47 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16
LS Contribution 391.94 15.07 5.91 5.91
Total: -1.00 -31.77 391.94 -9.48 -41.25
By element:
Atomic # 1 Polarization: 20.24 SS G_CDS: -5.82 Total: 14.42 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -3.27 Total: -0.42 kcal
Atomic # 7 Polarization: -32.28 SS G_CDS: 0.34 Total: -31.95 kcal
Atomic # 8 Polarization: -40.78 SS G_CDS: -1.61 Total: -42.38 kcal
Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.18 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -31.77 -9.48 -41.25 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601070394.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.372 kcal
(2) G-P(sol) polarization free energy of solvation -31.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds