Wall clock time and date at job start Wed Apr 1 2020 04:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48498 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47357 * 300.00101 * 3 2 1 6 6 H 1.48503 * 109.47510 * 60.00387 * 3 2 1 7 7 C 1.38951 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99786 * 198.75473 * 7 2 1 9 9 N 1.37097 * 120.00121 * 18.48032 * 7 2 1 10 10 C 1.46492 * 119.99869 * 37.18104 * 9 7 2 11 11 C 1.53005 * 109.47147 * 93.67021 * 10 9 7 12 12 C 1.50694 * 109.47480 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99984 * 359.97438 * 12 11 10 14 14 O 1.34220 * 120.00305 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99791 * 217.18932 * 9 7 2 16 16 O 1.21292 * 119.99788 * 180.02562 * 15 9 7 17 17 C 1.50701 * 119.99907 * 359.97438 * 15 9 7 18 18 H 1.09000 * 110.54900 * 55.70888 * 17 15 9 19 19 C 1.54990 * 110.62470 * 292.82680 * 17 15 9 20 20 C 1.54981 * 102.01453 * 204.59865 * 19 17 15 21 21 C 1.54102 * 104.25528 * 20.66267 * 20 19 17 22 22 H 1.08998 * 110.00299 * 242.67518 * 21 20 19 23 23 C 1.52998 * 109.87760 * 121.59208 * 21 20 19 24 24 C 1.50692 * 109.47125 * 175.71775 * 23 21 20 25 25 C 1.38234 * 120.00156 * 269.72823 * 24 23 21 26 26 C 1.38238 * 120.00027 * 179.81252 * 25 24 23 27 27 C 1.38228 * 119.99962 * 0.41320 * 26 25 24 28 28 C 1.38236 * 120.00268 * 359.81833 * 27 26 25 29 29 C 1.38237 * 119.99736 * 359.97438 * 28 27 26 30 30 O 1.43745 * 107.28835 * 2.16976 * 21 20 19 31 31 H 0.96994 * 120.00565 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47138 * 213.66136 * 10 9 7 33 33 H 1.08999 * 109.48015 * 333.66897 * 10 9 7 34 34 H 1.08997 * 109.46470 * 299.99895 * 11 10 9 35 35 H 1.08996 * 109.46933 * 59.99608 * 11 10 9 36 36 H 0.96701 * 117.00558 * 179.97438 * 14 12 11 37 37 H 1.09002 * 110.90531 * 322.67728 * 19 17 15 38 38 H 1.09006 * 110.90488 * 86.27482 * 19 17 15 39 39 H 1.09009 * 110.33924 * 262.02501 * 20 19 17 40 40 H 1.08992 * 110.57270 * 139.42453 * 20 19 17 41 41 H 1.09006 * 109.47044 * 295.71553 * 23 21 20 42 42 H 1.08995 * 109.47374 * 55.71313 * 23 21 20 43 43 H 1.07999 * 119.99895 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.99937 * 180.20697 * 26 25 24 45 45 H 1.08009 * 120.00283 * 179.79287 * 27 26 25 46 46 H 1.07998 * 120.00263 * 179.97438 * 28 27 26 47 47 H 1.07996 * 119.99762 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0459 -1.2282 0.3002 9 7 1.3765 -2.3599 -0.3774 10 6 0.3963 -2.3375 -1.4658 11 6 1.0904 -2.6844 -2.7845 12 6 0.0820 -2.6619 -3.9041 13 8 -1.0735 -2.3963 -3.6712 14 8 0.4671 -2.9381 -5.1599 15 6 1.6565 -3.5174 0.2536 16 8 1.0974 -4.5407 -0.0801 17 6 2.6652 -3.5404 1.3731 18 1 2.3913 -2.8262 2.1496 19 6 4.0869 -3.2412 0.8331 20 6 4.9858 -3.9181 1.8988 21 6 4.0573 -4.9383 2.5857 22 1 3.9414 -4.6863 3.6398 23 6 4.6398 -6.3464 2.4487 24 6 3.7814 -7.3217 3.2121 25 6 4.0567 -7.5931 4.5393 26 6 3.2668 -8.4848 5.2407 27 6 2.2068 -9.1114 4.6125 28 6 1.9344 -8.8436 3.2840 29 6 2.7217 -7.9487 2.5838 30 8 2.7832 -4.8698 1.9238 31 1 -0.4851 0.8399 0.0004 32 1 -0.3871 -3.0682 -1.2645 33 1 -0.0443 -1.3431 -1.5378 34 1 1.8737 -1.9537 -2.9858 35 1 1.5308 -3.6788 -2.7126 36 1 -0.2155 -2.9117 -5.8443 37 1 4.2352 -3.6973 -0.1457 38 1 4.2692 -2.1673 0.7920 39 1 5.3411 -3.1806 2.6186 40 1 5.8259 -4.4255 1.4248 41 1 4.6629 -6.6292 1.3962 42 1 5.6526 -6.3615 2.8512 43 1 4.8873 -7.1066 5.0289 44 1 3.4798 -8.6943 6.2785 45 1 1.5917 -9.8107 5.1596 46 1 1.1065 -9.3336 2.7931 47 1 2.5091 -7.7398 1.5458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:52 Heat of formation + Delta-G solvation = -164.794352 kcal Electronic energy + Delta-G solvation = -30876.245243 eV Core-core repulsion = 26602.126598 eV Total energy + Delta-G solvation = -4274.118645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45720 -41.08546 -40.14364 -39.24246 -37.23352 -36.79264 -34.36277 -33.81379 -33.23560 -32.25070 -31.69859 -30.39374 -27.38562 -27.11162 -25.39424 -23.69185 -23.35083 -22.26215 -22.04671 -21.59376 -20.98087 -19.35788 -18.76741 -18.14787 -17.64692 -17.55678 -17.14763 -16.95950 -16.72072 -16.38331 -16.08269 -15.90252 -15.55733 -15.39662 -15.05837 -14.44349 -14.31853 -14.21796 -14.19658 -14.11615 -14.02330 -13.66814 -13.27513 -13.07821 -12.95470 -12.83523 -12.76213 -12.58531 -12.56100 -12.43783 -12.14750 -11.98821 -11.88252 -11.81018 -11.67687 -11.59247 -11.36888 -11.04293 -10.72712 -10.24281 -9.75605 -9.55176 -9.49799 -8.28246 -6.09956 0.51261 0.56744 1.16629 1.44124 1.52712 1.64992 1.88462 1.98321 2.36628 2.61946 2.92919 3.07894 3.36473 3.73114 3.83771 3.95936 4.03969 4.05028 4.07317 4.12516 4.21255 4.27633 4.33006 4.36334 4.46897 4.50803 4.54802 4.69353 4.72269 4.74796 4.81244 4.88923 4.95063 4.96401 5.02010 5.17634 5.22555 5.24065 5.31274 5.35632 5.55003 5.59411 5.62481 5.67886 5.80086 5.94486 6.08158 6.21067 6.42547 6.98097 7.11840 7.53000 7.96201 8.74273 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.003136 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.782746 B = 8925.036817 C =10436.047413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.000 4.000 3 Si 0.983 3.017 4 H -0.241 1.241 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.362 4.362 8 H 0.123 0.877 9 N -0.441 5.441 10 C 0.132 3.868 11 C -0.116 4.116 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.506 6.506 15 C 0.464 3.536 16 O -0.625 6.625 17 C 0.082 3.918 18 H 0.083 0.917 19 C -0.131 4.131 20 C -0.137 4.137 21 C 0.070 3.930 22 H 0.072 0.928 23 C -0.073 4.073 24 C -0.089 4.089 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.139 4.139 29 C -0.125 4.125 30 O -0.376 6.376 31 H 0.271 0.729 32 H 0.027 0.973 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.427 0.573 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.123 0.877 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.644 -7.553 3.899 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.806 3.194 4 H -0.164 1.164 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.488 4.488 8 H 0.140 0.860 9 N -0.160 5.160 10 C 0.008 3.992 11 C -0.154 4.154 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.253 3.747 16 O -0.512 6.512 17 C 0.021 3.979 18 H 0.100 0.900 19 C -0.169 4.169 20 C -0.175 4.175 21 C 0.013 3.987 22 H 0.090 0.910 23 C -0.110 4.110 24 C -0.089 4.089 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.157 4.157 29 C -0.143 4.143 30 O -0.295 6.295 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.288 0.712 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.158 0.842 46 H 0.141 0.859 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.052 -8.028 4.073 15.855 hybrid contribution -1.241 0.943 -0.726 1.720 sum 11.810 -7.085 3.347 14.173 Atomic orbital electron populations 1.70049 1.08226 1.28724 1.46289 1.26376 0.95617 1.03383 0.94965 0.85026 0.79883 0.77076 0.77393 1.16403 1.20966 1.21079 1.20277 0.96767 0.84040 1.47730 0.85975 1.43504 1.37343 1.06980 1.28164 1.20959 0.90514 1.03174 0.84557 1.21612 0.97795 1.05445 0.90584 1.23379 0.88122 0.70962 0.83745 1.90707 1.22244 1.46453 1.84713 1.84497 1.47281 1.82110 1.18075 1.20853 0.85528 0.83977 0.84302 1.90518 1.56416 1.35178 1.69085 1.22576 0.95966 0.85331 0.93996 0.89972 1.23087 0.91296 1.03086 0.99437 1.23054 0.98266 0.98179 0.97971 1.22997 0.83313 0.95818 0.96573 0.91022 1.20869 0.98726 0.91095 1.00353 1.20021 0.96492 0.97184 0.95211 1.21355 1.00865 0.98691 0.93279 1.21479 0.95250 0.96823 1.00904 1.21419 0.98539 1.00784 0.94437 1.21360 0.99760 0.98762 0.95778 1.21168 0.96025 0.97105 1.00003 1.89009 1.37312 1.30250 1.72943 0.91972 0.95488 0.88265 0.85935 0.88324 0.71151 0.91565 0.87811 0.88083 0.87990 0.91403 0.86349 0.83552 0.83450 0.84196 0.85934 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.52 11.30 21.66 0.24 -47.27 16 2 C 0.00 -0.01 5.00 84.93 0.42 0.41 16 3 Si 0.98 36.58 29.59 68.60 2.03 38.61 16 4 H -0.24 -7.96 7.11 99.48 0.71 -7.25 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.36 -16.75 8.43 84.04 0.71 -16.04 16 8 H 0.12 4.98 4.68 -2.91 -0.01 4.96 16 9 N -0.44 -21.75 2.53 -635.54 -1.61 -23.36 16 10 C 0.13 6.58 4.21 86.38 0.36 6.94 16 11 C -0.12 -4.58 6.12 29.85 0.18 -4.40 16 12 C 0.49 18.21 8.33 71.23 0.59 18.80 16 13 O -0.55 -24.27 16.74 21.96 0.37 -23.90 16 14 O -0.51 -13.54 13.42 -51.32 -0.69 -14.22 16 15 C 0.46 23.18 7.06 87.66 0.62 23.80 16 16 O -0.63 -35.59 16.21 15.16 0.25 -35.35 16 17 C 0.08 3.32 2.94 30.53 0.09 3.40 16 18 H 0.08 3.40 8.01 -2.39 -0.02 3.38 16 19 C -0.13 -4.00 5.83 31.95 0.19 -3.81 16 20 C -0.14 -3.04 6.65 31.64 0.21 -2.83 16 21 C 0.07 1.93 3.40 30.97 0.11 2.04 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.07 -1.72 4.84 29.84 0.14 -1.58 16 24 C -0.09 -2.38 4.99 -19.87 -0.10 -2.48 16 25 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 26 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 27 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 28 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 29 C -0.12 -3.92 9.47 22.27 0.21 -3.71 16 30 O -0.38 -15.04 10.06 -130.75 -1.32 -16.36 16 31 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.03 1.49 7.49 -2.38 -0.02 1.48 16 33 H 0.10 5.36 5.38 -2.39 -0.01 5.34 16 34 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.43 7.07 9.10 -74.06 -0.67 6.40 16 37 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 38 H 0.10 2.96 5.91 -2.38 -0.01 2.95 16 39 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.10 1.76 7.70 -2.39 -0.02 1.74 16 41 H 0.07 1.75 8.09 -2.38 -0.02 1.73 16 42 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 43 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 47 H 0.10 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -74.37 391.94 4.23 -70.14 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: 0.33 Total: 42.50 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.63 Total: 9.22 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.36 Total: -70.64 kcal Atomic # 8 Polarization: -88.44 SS G_CDS: -1.39 Total: -89.83 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -74.37 4.23 -70.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.653 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds