Wall clock time and date at job start Wed Apr 1 2020 04:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00319 * 2 1 4 4 H 1.48501 * 109.47286 * 271.74128 * 3 2 1 5 5 H 1.48496 * 109.47199 * 31.74400 * 3 2 1 6 6 H 1.48509 * 109.46893 * 151.74399 * 3 2 1 7 7 C 1.38956 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 344.79746 * 7 2 1 9 9 N 1.37098 * 119.99927 * 164.79335 * 7 2 1 10 10 C 1.46495 * 119.99947 * 320.73228 * 9 7 2 11 11 C 1.52998 * 109.47380 * 270.00189 * 10 9 7 12 12 C 1.50699 * 109.47620 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99789 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00343 * 179.97438 * 12 11 10 15 15 C 1.34771 * 120.00082 * 140.73500 * 9 7 2 16 16 O 1.21292 * 120.00153 * 186.01714 * 15 9 7 17 17 C 1.50704 * 119.99838 * 6.01554 * 15 9 7 18 18 C 1.52999 * 109.47130 * 143.19020 * 17 15 9 19 19 H 1.09004 * 109.47124 * 53.72220 * 18 17 15 20 20 C 1.50702 * 109.47217 * 173.72437 * 18 17 15 21 21 C 1.38268 * 119.94216 * 62.84985 * 20 18 17 22 22 C 1.38147 * 120.05315 * 179.72586 * 21 20 18 23 23 C 1.38728 * 119.94125 * 0.56234 * 22 21 20 24 24 O 1.35903 * 120.05490 * 179.67935 * 23 22 21 25 25 C 1.38733 * 119.89414 * 359.71397 * 23 22 21 26 26 C 1.38147 * 119.94008 * 359.97438 * 25 23 22 27 27 C 1.52997 * 109.47399 * 293.72723 * 18 17 15 28 28 C 1.53001 * 117.49865 * 66.72199 * 27 18 17 29 29 C 1.52995 * 117.50308 * 135.34427 * 27 18 17 30 30 H 0.97005 * 119.99498 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47448 * 30.00170 * 10 9 7 32 32 H 1.08994 * 109.47247 * 150.00114 * 10 9 7 33 33 H 1.09007 * 109.47521 * 300.00141 * 11 10 9 34 34 H 1.09002 * 109.47290 * 59.99830 * 11 10 9 35 35 H 0.96701 * 117.00146 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47550 * 23.19221 * 17 15 9 37 37 H 1.08996 * 109.47235 * 263.18928 * 17 15 9 38 38 H 1.08000 * 119.96861 * 359.97438 * 21 20 18 39 39 H 1.08001 * 120.02567 * 180.25035 * 22 21 20 40 40 H 0.96702 * 114.00663 * 270.02903 * 24 23 22 41 41 H 1.08001 * 120.02931 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.96826 * 180.02562 * 26 25 23 43 43 H 1.09005 * 115.56069 * 281.03881 * 27 18 17 44 44 H 1.09000 * 117.49844 * 0.02562 * 28 27 18 45 45 H 1.09008 * 117.49881 * 214.98166 * 28 27 18 46 46 H 1.09005 * 117.50204 * 145.02487 * 29 27 18 47 47 H 1.08998 * 117.51627 * 359.97438 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4589 2.0676 -1.3994 5 1 1.4647 2.6417 0.7366 6 1 3.5638 1.4296 0.6629 7 6 2.0088 -1.2034 -0.0005 8 1 1.4971 -2.1225 0.2443 9 7 3.3438 -1.2242 -0.3120 10 6 3.8598 -0.3665 -1.3817 11 6 3.7995 -1.1189 -2.7125 12 6 4.3297 -0.2365 -3.8131 13 8 4.7166 0.8797 -3.5590 14 8 4.3731 -0.6907 -5.0754 15 6 4.1814 -2.0336 0.3659 16 8 5.3764 -1.9736 0.1668 17 6 3.6333 -3.0132 1.3715 18 6 4.4455 -4.3087 1.3165 19 1 5.5041 -4.0793 1.4392 20 6 3.9992 -5.2287 2.4235 21 6 2.7017 -5.7060 2.4432 22 6 2.2918 -6.5541 3.4537 23 6 3.1799 -6.9175 4.4556 24 8 2.7772 -7.7464 5.4544 25 6 4.4796 -6.4327 4.4367 26 6 4.8865 -5.5900 3.4204 27 6 4.2251 -4.9919 -0.0346 28 6 4.7615 -4.2837 -1.2802 29 6 5.4562 -5.5424 -0.7571 30 1 -0.4850 0.8401 -0.0004 31 1 3.2535 0.5370 -1.4474 32 1 4.8928 -0.0958 -1.1639 33 1 4.4057 -2.0225 -2.6470 34 1 2.7663 -1.3897 -2.9304 35 1 4.7208 -0.0882 -5.7471 36 1 2.5904 -3.2281 1.1383 37 1 3.7011 -2.5840 2.3711 38 1 2.0093 -5.4187 1.6657 39 1 1.2793 -6.9298 3.4665 40 1 2.4071 -7.2878 6.2211 41 1 5.1727 -6.7138 5.2158 42 1 5.8983 -5.2127 3.4051 43 1 3.2927 -5.5478 -0.1340 44 1 5.2718 -3.3312 -1.1371 45 1 4.1821 -4.3737 -2.1991 46 1 5.3339 -6.4605 -1.3318 47 1 6.4235 -5.4177 -0.2703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:45 Heat of formation + Delta-G solvation = -110.388660 kcal Electronic energy + Delta-G solvation = -31288.310587 eV Core-core repulsion = 27016.551150 eV Total energy + Delta-G solvation = -4271.759437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.22458 -39.94131 -39.15668 -37.53809 -36.27184 -35.95917 -35.11290 -32.69359 -32.22251 -30.95242 -30.89290 -28.59313 -25.43995 -25.08317 -23.57285 -22.90412 -21.99632 -21.73681 -20.85426 -19.75293 -18.95962 -18.41077 -17.94365 -17.05829 -16.60629 -16.43627 -15.95274 -15.71156 -15.49805 -15.34606 -15.09114 -14.62298 -14.48175 -13.85228 -13.67441 -13.57555 -13.34698 -13.22073 -12.92263 -12.67878 -12.36512 -12.29631 -12.23866 -11.90854 -11.82726 -11.57892 -11.35446 -11.29245 -11.14325 -10.98205 -10.77624 -10.50960 -10.34704 -10.29322 -9.99988 -9.91482 -9.78548 -9.52961 -9.28059 -8.92463 -8.73176 -8.34125 -7.93397 -6.54532 -4.22987 1.27886 1.41766 2.46506 3.05701 3.16469 3.21515 3.27613 3.59377 3.68004 4.06018 4.15563 4.24257 4.30507 4.81095 4.87317 4.97575 5.01590 5.13153 5.29177 5.30821 5.40700 5.46518 5.53146 5.58976 5.61563 5.73490 5.81455 5.84812 5.94347 5.97135 5.98462 6.06327 6.09272 6.23449 6.30302 6.37510 6.40610 6.42882 6.46337 6.51748 6.61300 6.68801 6.77241 6.85312 6.87850 7.25296 7.60668 7.96946 8.09103 8.12934 8.84051 9.21351 9.52452 10.54912 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003429 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.613503 B = 8164.508923 C = 9544.565529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.349 4.349 8 H 0.111 0.889 9 N -0.463 5.463 10 C 0.109 3.891 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.519 6.519 14 O -0.520 6.520 15 C 0.497 3.503 16 O -0.594 6.594 17 C -0.115 4.115 18 C -0.008 4.008 19 H 0.088 0.912 20 C -0.067 4.067 21 C -0.093 4.093 22 C -0.142 4.142 23 C 0.090 3.910 24 O -0.503 6.503 25 C -0.145 4.145 26 C -0.100 4.100 27 C -0.141 4.141 28 C -0.196 4.196 29 C -0.181 4.181 30 H 0.276 0.724 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.404 0.596 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.387 0.613 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -9.678 1.770 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.138 4.138 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.128 0.872 9 N -0.183 5.183 10 C -0.015 4.015 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.288 3.712 16 O -0.480 6.480 17 C -0.155 4.155 18 C -0.027 4.027 19 H 0.106 0.894 20 C -0.067 4.067 21 C -0.111 4.111 22 C -0.161 4.161 23 C 0.046 3.954 24 O -0.313 6.313 25 C -0.164 4.164 26 C -0.119 4.119 27 C -0.159 4.159 28 C -0.232 4.232 29 C -0.218 4.218 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.262 0.738 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.242 0.758 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.422 -9.931 1.676 11.439 hybrid contribution 0.072 1.665 -0.190 1.678 sum 5.494 -8.266 1.485 10.036 Atomic orbital electron populations 1.69681 1.06074 1.28273 1.45699 1.25321 0.95166 0.98455 0.94892 0.86995 0.80693 0.83407 0.78572 1.19586 1.21604 1.18559 1.19092 0.82202 0.95950 1.50288 0.87204 1.43712 1.08516 1.37845 1.28199 1.21452 1.00991 0.93605 0.85408 1.21828 1.04388 0.99173 0.91012 1.23734 0.74305 0.86619 0.82782 1.90705 1.45071 1.21517 1.83470 1.84579 1.78759 1.50589 1.19185 1.20351 0.85643 0.83324 0.81910 1.90474 1.15802 1.72595 1.69148 1.21504 1.01533 0.93118 0.99303 1.19604 1.00814 0.91946 0.90306 0.89358 1.19907 0.93651 0.97358 0.95791 1.20995 0.95812 0.96207 0.98130 1.21393 0.99812 0.98985 0.95897 1.18456 0.92589 0.93539 0.90826 1.84813 1.83083 1.34433 1.28981 1.21339 0.96070 0.98747 1.00223 1.20971 0.99684 0.97423 0.93771 1.22189 0.97739 1.03525 0.92445 1.23692 1.03865 0.98959 0.96698 1.22886 0.96617 0.97736 1.04516 0.91354 0.90787 0.90031 0.87383 0.86676 0.73846 0.88546 0.89601 0.85202 0.85634 0.75809 0.85817 0.85672 0.88163 0.85154 0.89716 0.89751 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.63 13.96 55.50 0.77 -21.86 16 2 C 0.07 1.73 5.40 -17.47 -0.09 1.64 16 3 Si 0.87 20.44 24.77 -169.99 -4.21 16.23 16 4 H -0.27 -6.29 6.63 56.52 0.37 -5.92 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.25 7.10 56.52 0.40 -5.85 16 7 C -0.35 -8.26 9.14 -14.93 -0.14 -8.39 16 8 H 0.11 2.67 6.47 -52.49 -0.34 2.33 16 9 N -0.46 -10.10 2.18 -114.81 -0.25 -10.35 16 10 C 0.11 2.32 3.48 -4.05 -0.01 2.30 16 11 C -0.13 -2.22 6.13 -27.88 -0.17 -2.39 16 12 C 0.48 8.17 8.33 36.01 0.30 8.47 16 13 O -0.52 -10.33 16.74 -18.76 -0.31 -10.64 16 14 O -0.52 -6.77 13.42 -39.26 -0.53 -7.30 16 15 C 0.50 10.22 5.44 -10.99 -0.06 10.16 16 16 O -0.59 -13.02 13.26 5.55 0.07 -12.94 16 17 C -0.11 -2.01 4.41 -27.88 -0.12 -2.14 16 18 C -0.01 -0.12 2.04 -91.77 -0.19 -0.31 16 19 H 0.09 1.42 7.19 -51.93 -0.37 1.04 16 20 C -0.07 -0.91 4.78 -104.60 -0.50 -1.41 16 21 C -0.09 -1.22 8.65 -39.60 -0.34 -1.56 16 22 C -0.14 -1.74 9.99 -39.43 -0.39 -2.14 16 23 C 0.09 1.09 6.70 -39.22 -0.26 0.82 16 24 O -0.50 -5.35 13.50 -19.43 -0.26 -5.61 16 25 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 26 C -0.10 -1.26 9.66 -39.61 -0.38 -1.64 16 27 C -0.14 -2.07 4.88 -90.62 -0.44 -2.51 16 28 C -0.20 -3.05 8.30 -26.73 -0.22 -3.28 16 29 C -0.18 -2.48 10.18 -26.74 -0.27 -2.75 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.07 1.70 2.80 -51.93 -0.15 1.55 16 32 H 0.08 1.80 7.31 -51.93 -0.38 1.42 16 33 H 0.11 1.79 6.69 -51.92 -0.35 1.45 16 34 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 35 H 0.40 3.34 9.10 45.56 0.41 3.76 16 36 H 0.10 1.71 5.69 -51.93 -0.30 1.42 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.13 1.64 7.37 -52.49 -0.39 1.25 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.39 2.27 9.06 45.56 0.41 2.68 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.13 1.40 7.95 -52.49 -0.42 0.98 16 43 H 0.10 1.41 7.24 -51.93 -0.38 1.03 16 44 H 0.13 2.37 3.93 -51.93 -0.20 2.17 16 45 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -30.58 382.06 -7.21 -37.79 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -4.56 Total: 16.15 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.70 Total: -7.23 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.52 Total: -32.21 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.03 Total: -36.49 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.21 Total: 16.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.58 -7.21 -37.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.599 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds