Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00319 * 2 1 4 4 H 1.48501 * 109.47286 * 271.74128 * 3 2 1 5 5 H 1.48496 * 109.47199 * 31.74400 * 3 2 1 6 6 H 1.48509 * 109.46893 * 151.74399 * 3 2 1 7 7 C 1.38956 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 344.79746 * 7 2 1 9 9 N 1.37098 * 119.99927 * 164.79335 * 7 2 1 10 10 C 1.46495 * 119.99947 * 320.73228 * 9 7 2 11 11 C 1.52998 * 109.47380 * 270.00189 * 10 9 7 12 12 C 1.50699 * 109.47620 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99789 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00343 * 179.97438 * 12 11 10 15 15 C 1.34771 * 120.00082 * 140.73500 * 9 7 2 16 16 O 1.21292 * 120.00153 * 186.01714 * 15 9 7 17 17 C 1.50704 * 119.99838 * 6.01554 * 15 9 7 18 18 C 1.52999 * 109.47130 * 143.19020 * 17 15 9 19 19 H 1.09004 * 109.47124 * 53.72220 * 18 17 15 20 20 C 1.50702 * 109.47217 * 173.72437 * 18 17 15 21 21 C 1.38268 * 119.94216 * 62.84985 * 20 18 17 22 22 C 1.38147 * 120.05315 * 179.72586 * 21 20 18 23 23 C 1.38728 * 119.94125 * 0.56234 * 22 21 20 24 24 O 1.35903 * 120.05490 * 179.67935 * 23 22 21 25 25 C 1.38733 * 119.89414 * 359.71397 * 23 22 21 26 26 C 1.38147 * 119.94008 * 359.97438 * 25 23 22 27 27 C 1.52997 * 109.47399 * 293.72723 * 18 17 15 28 28 C 1.53001 * 117.49865 * 66.72199 * 27 18 17 29 29 C 1.52995 * 117.50308 * 135.34427 * 27 18 17 30 30 H 0.97005 * 119.99498 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47448 * 30.00170 * 10 9 7 32 32 H 1.08994 * 109.47247 * 150.00114 * 10 9 7 33 33 H 1.09007 * 109.47521 * 300.00141 * 11 10 9 34 34 H 1.09002 * 109.47290 * 59.99830 * 11 10 9 35 35 H 0.96701 * 117.00146 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47550 * 23.19221 * 17 15 9 37 37 H 1.08996 * 109.47235 * 263.18928 * 17 15 9 38 38 H 1.08000 * 119.96861 * 359.97438 * 21 20 18 39 39 H 1.08001 * 120.02567 * 180.25035 * 22 21 20 40 40 H 0.96702 * 114.00663 * 270.02903 * 24 23 22 41 41 H 1.08001 * 120.02931 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.96826 * 180.02562 * 26 25 23 43 43 H 1.09005 * 115.56069 * 281.03881 * 27 18 17 44 44 H 1.09000 * 117.49844 * 0.02562 * 28 27 18 45 45 H 1.09008 * 117.49881 * 214.98166 * 28 27 18 46 46 H 1.09005 * 117.50204 * 145.02487 * 29 27 18 47 47 H 1.08998 * 117.51627 * 359.97438 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4589 2.0676 -1.3994 5 1 1.4647 2.6417 0.7366 6 1 3.5638 1.4296 0.6629 7 6 2.0088 -1.2034 -0.0005 8 1 1.4971 -2.1225 0.2443 9 7 3.3438 -1.2242 -0.3120 10 6 3.8598 -0.3665 -1.3817 11 6 3.7995 -1.1189 -2.7125 12 6 4.3297 -0.2365 -3.8131 13 8 4.7166 0.8797 -3.5590 14 8 4.3731 -0.6907 -5.0754 15 6 4.1814 -2.0336 0.3659 16 8 5.3764 -1.9736 0.1668 17 6 3.6333 -3.0132 1.3715 18 6 4.4455 -4.3087 1.3165 19 1 5.5041 -4.0793 1.4392 20 6 3.9992 -5.2287 2.4235 21 6 2.7017 -5.7060 2.4432 22 6 2.2918 -6.5541 3.4537 23 6 3.1799 -6.9175 4.4556 24 8 2.7772 -7.7464 5.4544 25 6 4.4796 -6.4327 4.4367 26 6 4.8865 -5.5900 3.4204 27 6 4.2251 -4.9919 -0.0346 28 6 4.7615 -4.2837 -1.2802 29 6 5.4562 -5.5424 -0.7571 30 1 -0.4850 0.8401 -0.0004 31 1 3.2535 0.5370 -1.4474 32 1 4.8928 -0.0958 -1.1639 33 1 4.4057 -2.0225 -2.6470 34 1 2.7663 -1.3897 -2.9304 35 1 4.7208 -0.0882 -5.7471 36 1 2.5904 -3.2281 1.1383 37 1 3.7011 -2.5840 2.3711 38 1 2.0093 -5.4187 1.6657 39 1 1.2793 -6.9298 3.4665 40 1 2.4071 -7.2878 6.2211 41 1 5.1727 -6.7138 5.2158 42 1 5.8983 -5.2127 3.4051 43 1 3.2927 -5.5478 -0.1340 44 1 5.2718 -3.3312 -1.1371 45 1 4.1821 -4.3737 -2.1991 46 1 5.3339 -6.4605 -1.3318 47 1 6.4235 -5.4177 -0.2703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = -129.667372 kcal Electronic energy + Delta-G solvation = -31289.146575 eV Core-core repulsion = 27016.551150 eV Total energy + Delta-G solvation = -4272.595425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61328 -41.14826 -40.42742 -38.71333 -37.37989 -37.17139 -36.76938 -34.25078 -33.77180 -32.41872 -31.87659 -29.78757 -26.93769 -26.78406 -24.97036 -23.86162 -23.14902 -22.74903 -22.21752 -21.16072 -20.50795 -19.29979 -19.26543 -18.57940 -18.23748 -17.94009 -17.19084 -17.02473 -16.78413 -16.61240 -16.28137 -15.88649 -15.64729 -15.46009 -15.07393 -14.86876 -14.62138 -14.47130 -14.25415 -14.19014 -13.82929 -13.68135 -13.55487 -13.28291 -12.99392 -12.96170 -12.73298 -12.67243 -12.60303 -12.30765 -12.13528 -11.98178 -11.80215 -11.66091 -11.50852 -11.23261 -11.10717 -10.98708 -10.74081 -10.45193 -9.85947 -9.73541 -9.33239 -8.49215 -6.15206 0.33178 0.48008 1.11474 1.17852 1.30074 1.37361 1.78214 2.03166 2.14859 2.66069 2.81209 2.95283 3.02052 3.39625 3.70463 3.79769 3.83462 3.87648 4.08420 4.13844 4.14642 4.28227 4.32771 4.43517 4.48638 4.51548 4.55391 4.55768 4.60914 4.66312 4.77221 4.84424 4.89712 5.00470 5.02237 5.09162 5.18325 5.21105 5.40016 5.41123 5.45724 5.52357 5.53299 5.56836 5.79568 5.96974 6.11429 6.24585 6.91698 6.93615 6.96752 7.41583 7.76459 8.63616 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003429 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.613503 B = 8164.508923 C = 9544.565529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.040 3.960 3 Si 0.912 3.088 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.104 0.896 9 N -0.474 5.474 10 C 0.107 3.893 11 C -0.119 4.119 12 C 0.493 3.507 13 O -0.553 6.553 14 O -0.504 6.504 15 C 0.499 3.501 16 O -0.605 6.605 17 C -0.110 4.110 18 C 0.004 3.996 19 H 0.077 0.923 20 C -0.080 4.080 21 C -0.100 4.100 22 C -0.150 4.150 23 C 0.092 3.908 24 O -0.511 6.511 25 C -0.148 4.148 26 C -0.104 4.104 27 C -0.145 4.145 28 C -0.210 4.210 29 C -0.163 4.163 30 H 0.278 0.722 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.428 0.572 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.408 0.592 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -11.422 1.862 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.165 4.165 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.457 4.457 8 H 0.121 0.879 9 N -0.195 5.195 10 C -0.016 4.016 11 C -0.158 4.158 12 C 0.337 3.663 13 O -0.445 6.445 14 O -0.317 6.317 15 C 0.291 3.709 16 O -0.492 6.492 17 C -0.150 4.150 18 C -0.014 4.014 19 H 0.096 0.904 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.168 4.168 23 C 0.048 3.952 24 O -0.324 6.324 25 C -0.166 4.166 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.247 4.247 29 C -0.200 4.200 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.290 0.710 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.267 0.733 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.123 0.877 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.938 -11.677 1.753 13.217 hybrid contribution -0.004 2.109 -0.205 2.119 sum 5.934 -9.568 1.548 11.365 Atomic orbital electron populations 1.69717 1.06756 1.28699 1.47997 1.25636 0.95412 0.99877 0.95529 0.86416 0.79274 0.82089 0.78084 1.19934 1.21448 1.19899 1.19040 0.82730 0.95369 1.48518 0.87879 1.43784 1.08049 1.38466 1.29154 1.21357 0.99610 0.93507 0.87136 1.21650 1.05045 0.99206 0.89878 1.23393 0.73506 0.85657 0.83724 1.90703 1.46729 1.22816 1.84229 1.84501 1.78212 1.50843 1.18171 1.20840 0.85373 0.82933 0.81756 1.90472 1.16432 1.72798 1.69448 1.21511 1.01645 0.93662 0.98165 1.19424 0.99521 0.91042 0.91460 0.90447 1.19776 0.94286 0.98031 0.95949 1.21037 0.95645 0.96573 0.98539 1.21560 1.00616 0.98903 0.95741 1.18568 0.92670 0.92937 0.91036 1.84755 1.83231 1.34769 1.29607 1.21549 0.96394 0.98294 1.00366 1.21125 1.00036 0.97485 0.93570 1.22248 0.98698 1.03533 0.91779 1.23561 1.04892 0.98676 0.97557 1.22938 0.96078 0.97486 1.03509 0.91205 0.92451 0.91354 0.86202 0.86237 0.70988 0.88857 0.89481 0.85294 0.84388 0.73285 0.83922 0.84705 0.87397 0.87680 0.89022 0.87741 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.26 13.96 21.66 0.30 -46.96 16 2 C 0.04 2.01 5.40 84.93 0.46 2.47 16 3 Si 0.91 42.71 24.77 68.60 1.70 44.41 16 4 H -0.27 -12.77 6.63 99.48 0.66 -12.11 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -13.22 7.10 99.48 0.71 -12.51 16 7 C -0.33 -15.66 9.14 84.04 0.77 -14.89 16 8 H 0.10 5.03 6.47 -2.91 -0.02 5.01 16 9 N -0.47 -20.78 2.18 -635.55 -1.39 -22.17 16 10 C 0.11 4.60 3.48 86.38 0.30 4.90 16 11 C -0.12 -4.17 6.13 29.85 0.18 -3.98 16 12 C 0.49 16.16 8.33 71.24 0.59 16.76 16 13 O -0.55 -21.80 16.74 21.94 0.37 -21.43 16 14 O -0.50 -11.96 13.42 -51.41 -0.69 -12.65 16 15 C 0.50 20.58 5.44 87.66 0.48 21.05 16 16 O -0.61 -26.63 13.26 -3.07 -0.04 -26.67 16 17 C -0.11 -3.84 4.41 29.85 0.13 -3.71 16 18 C 0.00 0.13 2.04 -11.54 -0.02 0.11 16 19 H 0.08 2.44 7.19 -2.38 -0.02 2.42 16 20 C -0.08 -2.09 4.78 -19.85 -0.09 -2.18 16 21 C -0.10 -2.49 8.65 22.26 0.19 -2.30 16 22 C -0.15 -3.40 9.99 22.37 0.22 -3.18 16 23 C 0.09 2.01 6.70 22.51 0.15 2.17 16 24 O -0.51 -9.50 13.50 -92.45 -1.25 -10.75 16 25 C -0.15 -3.14 9.99 22.37 0.22 -2.91 16 26 C -0.10 -2.43 9.66 22.25 0.22 -2.21 16 27 C -0.14 -4.06 4.88 -10.80 -0.05 -4.12 16 28 C -0.21 -6.35 8.30 30.59 0.25 -6.09 16 29 C -0.16 -4.18 10.18 30.59 0.31 -3.87 16 30 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.06 2.66 2.80 -2.38 -0.01 2.65 16 32 H 0.07 3.07 7.31 -2.39 -0.02 3.06 16 33 H 0.12 3.89 6.69 -2.38 -0.02 3.88 16 34 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 35 H 0.43 5.91 9.10 -74.06 -0.67 5.23 16 36 H 0.09 3.31 5.69 -2.39 -0.01 3.30 16 37 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.13 3.16 7.37 -2.91 -0.02 3.13 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.41 3.66 9.06 -74.06 -0.67 2.99 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.14 2.80 7.95 -2.91 -0.02 2.78 16 43 H 0.11 2.87 7.24 -2.38 -0.02 2.85 16 44 H 0.11 3.79 3.93 -2.39 -0.01 3.78 16 45 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 46 H 0.10 2.26 8.14 -2.38 -0.02 2.25 16 47 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 Total: -1.00 -64.83 382.06 2.96 -61.86 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.35 Total: 36.36 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.31 Total: -2.01 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.09 Total: -69.13 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -1.61 Total: -71.49 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.70 Total: 44.41 kcal Total: -64.83 2.96 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.806 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds