Wall clock time and date at job start Wed Apr 1 2020 04:32:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86801 * 120.00217 * 2 1
4 4 H 1.48497 * 109.46999 * 269.99864 * 3 2 1
5 5 H 1.48502 * 109.46964 * 30.00312 * 3 2 1
6 6 H 1.48506 * 109.47180 * 150.00127 * 3 2 1
7 7 C 1.38658 * 119.99988 * 180.02562 * 2 1 3
8 8 H 1.08007 * 120.00021 * 359.97438 * 7 2 1
9 9 O 1.34826 * 120.00172 * 179.97438 * 7 2 1
10 10 C 1.35755 * 117.00040 * 185.09078 * 9 7 2
11 11 C 1.38876 * 120.06806 * 174.45231 * 10 9 7
12 12 C 1.38099 * 119.93026 * 180.02562 * 11 10 9
13 13 C 1.38301 * 120.06723 * 359.97438 * 12 11 10
14 14 C 1.50706 * 119.92866 * 179.97438 * 13 12 11
15 15 C 1.50692 * 109.47365 * 89.99471 * 14 13 12
16 16 O 1.21279 * 120.00137 * 0.02562 * 15 14 13
17 17 N 1.34777 * 120.00169 * 179.97438 * 15 14 13
18 18 C 1.47610 * 118.64114 * 3.69914 * 17 15 14
19 19 C 1.53600 * 112.33893 * 222.03311 * 18 17 15
20 20 C 1.50883 * 109.95134 * 40.83050 * 19 18 17
21 21 C 1.52562 * 109.35883 * 268.02240 * 20 19 18
22 22 C 1.47095 * 114.32710 * 85.01761 * 21 20 19
23 23 C 1.44582 * 118.64683 * 183.96036 * 17 15 14
24 24 H 1.09003 * 109.44792 * 209.26805 * 23 17 15
25 25 C 1.50697 * 109.45000 * 329.21733 * 23 17 15
26 26 O 1.20826 * 120.00293 * 137.39060 * 25 23 17
27 27 O 1.34237 * 119.99747 * 317.39354 * 25 23 17
28 28 C 1.38302 * 120.14057 * 359.97438 * 13 12 11
29 29 C 1.38100 * 120.06546 * 0.02562 * 28 13 12
30 30 H 0.96998 * 119.99453 * 359.97438 * 1 2 3
31 31 H 1.07999 * 120.03617 * 0.04205 * 11 10 9
32 32 H 1.08000 * 119.96964 * 180.25674 * 12 11 10
33 33 H 1.09005 * 109.46506 * 209.99848 * 14 13 12
34 34 H 1.08999 * 109.47041 * 329.98822 * 14 13 12
35 35 H 1.08999 * 108.94512 * 342.83485 * 18 17 15
36 36 H 1.09000 * 108.94973 * 101.46329 * 18 17 15
37 37 H 1.09005 * 109.50941 * 280.63936 * 19 18 17
38 38 H 1.08999 * 109.26287 * 160.87368 * 19 18 17
39 39 H 1.09008 * 109.48594 * 148.05636 * 20 19 18
40 40 H 1.08992 * 109.51128 * 28.00625 * 20 19 18
41 41 H 1.08993 * 108.51728 * 323.75822 * 21 20 19
42 42 H 1.09001 * 108.38820 * 206.17601 * 21 20 19
43 43 H 1.08998 * 109.32968 * 176.93506 * 22 21 20
44 44 H 1.09001 * 109.18841 * 57.36490 * 22 21 20
45 45 H 0.96704 * 116.99445 * 179.97438 * 27 25 23
46 46 H 1.08003 * 119.96624 * 180.02562 * 28 13 12
47 47 H 1.08002 * 120.03126 * 179.97438 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4972 2.0463 -1.4001
5 1 1.4471 2.6526 0.7001
6 1 3.5472 1.4401 0.7000
7 6 2.0089 -1.2008 -0.0005
8 1 1.4688 -2.1362 -0.0005
9 8 3.3571 -1.2009 -0.0011
10 6 3.9734 -2.4057 -0.1089
11 6 5.3551 -2.4719 -0.2320
12 6 5.9789 -3.6990 -0.3420
13 6 5.2293 -4.8612 -0.3292
14 6 5.9133 -6.1986 -0.4501
15 6 6.2654 -6.7087 0.9234
16 8 5.9878 -6.0513 1.9041
17 7 6.8879 -7.8961 1.0622
18 6 7.2847 -8.6333 -0.1534
19 6 6.9999 -10.1385 -0.0425
20 6 5.6654 -10.3622 0.6251
21 6 5.8715 -10.5140 2.1291
22 6 5.9235 -9.2415 2.8651
23 6 7.1343 -8.3978 2.3956
24 1 8.0293 -9.0200 2.3897
25 6 7.3346 -7.2395 3.3386
26 8 6.8223 -7.2556 4.4327
27 8 8.0822 -6.1898 2.9629
28 6 3.8532 -4.7985 -0.2057
29 6 3.2235 -3.5744 -0.0953
30 1 -0.4849 0.8401 0.0004
31 1 5.9411 -1.5648 -0.2414
32 1 7.0538 -3.7515 -0.4336
33 1 5.2440 -6.9059 -0.9400
34 1 6.8224 -6.0896 -1.0414
35 1 6.7368 -8.2314 -1.0057
36 1 8.3521 -8.4900 -0.3217
37 1 7.7834 -10.6148 0.5471
38 1 6.9825 -10.5758 -1.0408
39 1 5.2071 -11.2678 0.2275
40 1 5.0141 -9.5100 0.4315
41 1 6.8053 -11.0500 2.2982
42 1 5.0530 -11.1122 2.5297
43 1 6.0176 -9.4452 3.9318
44 1 5.0040 -8.6849 2.6839
45 1 8.1816 -5.4706 3.6017
46 1 3.2705 -5.7079 -0.1956
47 1 2.1488 -3.5262 0.0007
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601073877.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:32:15
Heat of formation + Delta-G solvation = -122.941237 kcal
Electronic energy + Delta-G solvation = -31232.345694 eV
Core-core repulsion = 26960.041936 eV
Total energy + Delta-G solvation = -4272.303758 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.37585 -39.46680 -38.98385 -37.93225 -36.60349 -35.93869 -34.27512 -33.29172
-32.44998 -31.48064 -30.21456 -28.21741 -26.62607 -26.25499 -24.84656 -22.77074
-22.17770 -22.00714 -20.92445 -20.45972 -19.05003 -17.93853 -17.86364 -17.55504
-17.24228 -16.85997 -16.08950 -15.58481 -15.42727 -14.92152 -14.81659 -14.68032
-14.45180 -14.15439 -13.99349 -13.74245 -13.58604 -13.47837 -13.25729 -12.96950
-12.80307 -12.64615 -12.39117 -12.19676 -12.11798 -11.70480 -11.50188 -11.33169
-11.28210 -11.15610 -11.09892 -10.95150 -10.87037 -10.72452 -10.65758 -10.44958
-10.13485 -9.78287 -9.36008 -8.97341 -8.83717 -8.21006 -7.28591 -6.39324
-4.05606 2.07072 2.18590 2.26586 2.58076 2.82943 3.05893 3.24133
3.27192 3.42839 4.18334 4.26042 4.31169 4.33919 4.43755 4.55293
4.63801 4.76305 4.85224 4.91888 5.04782 5.09715 5.15630 5.16916
5.18963 5.23964 5.27807 5.46436 5.49414 5.57827 5.66291 5.70173
5.72257 5.76975 5.78434 5.85697 5.98955 6.15570 6.23653 6.35282
6.58709 6.68192 6.81622 6.99614 7.10243 7.24328 7.33103 7.64215
7.82987 8.00486 8.06508 8.09341 8.96115 9.58927 10.68440
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.017756 B = 0.002541 C = 0.002467
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1576.567787 B =11018.401946 C =11347.042837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.063 3.937
3 Si 0.905 3.095
4 H -0.273 1.273
5 H -0.282 1.282
6 H -0.259 1.259
7 C -0.389 4.389
8 H 0.106 0.894
9 O -0.218 6.218
10 C 0.163 3.837
11 C -0.192 4.192
12 C -0.059 4.059
13 C -0.164 4.164
14 C -0.076 4.076
15 C 0.512 3.488
16 O -0.498 6.498
17 N -0.609 5.609
18 C 0.107 3.893
19 C -0.135 4.135
20 C -0.121 4.121
21 C -0.118 4.118
22 C -0.119 4.119
23 C 0.161 3.839
24 H 0.113 0.887
25 C 0.498 3.502
26 O -0.522 6.522
27 O -0.510 6.510
28 C -0.057 4.057
29 C -0.219 4.219
30 H 0.279 0.721
31 H 0.116 0.884
32 H 0.110 0.890
33 H 0.094 0.906
34 H 0.095 0.905
35 H 0.091 0.909
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.080 0.920
39 H 0.066 0.934
40 H 0.068 0.932
41 H 0.061 0.939
42 H 0.066 0.934
43 H 0.088 0.912
44 H 0.074 0.926
45 H 0.408 0.592
46 H 0.105 0.895
47 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.568 -22.958 -1.671 28.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.183 1.183
7 C -0.464 4.464
8 H 0.124 0.876
9 O -0.123 6.123
10 C 0.111 3.889
11 C -0.211 4.211
12 C -0.077 4.077
13 C -0.165 4.165
14 C -0.115 4.115
15 C 0.301 3.699
16 O -0.372 6.372
17 N -0.346 5.346
18 C -0.015 4.015
19 C -0.173 4.173
20 C -0.158 4.158
21 C -0.155 4.155
22 C -0.157 4.157
23 C 0.055 3.945
24 H 0.131 0.869
25 C 0.341 3.659
26 O -0.411 6.411
27 O -0.321 6.321
28 C -0.076 4.076
29 C -0.238 4.238
30 H 0.089 0.911
31 H 0.134 0.866
32 H 0.128 0.872
33 H 0.113 0.887
34 H 0.113 0.887
35 H 0.109 0.891
36 H 0.087 0.913
37 H 0.087 0.913
38 H 0.099 0.901
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.080 0.920
42 H 0.085 0.915
43 H 0.106 0.894
44 H 0.092 0.908
45 H 0.266 0.734
46 H 0.123 0.877
47 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 17.116 -22.547 -1.096 28.329
hybrid contribution 0.178 1.031 0.450 1.139
sum 17.295 -21.516 -0.646 27.613
Atomic orbital electron populations
1.69648 1.05573 1.28456 1.48160 1.24466 0.95024 0.98818 0.95701
0.86180 0.80377 0.81429 0.78916 1.19885 1.20799 1.18344 1.20775
0.76917 0.96631 1.52099 0.87647 1.83569 1.22605 1.25813 1.80272
1.19128 0.91717 0.85455 0.92608 1.20146 0.91957 0.97780 1.11207
1.20385 0.97989 0.91330 0.98019 1.18693 0.93429 0.92385 1.12005
1.20437 1.01616 0.96363 0.93118 1.21189 0.76196 0.79789 0.92747
1.90677 1.51244 1.55418 1.39896 1.47855 1.60779 1.20991 1.04954
1.22004 1.00749 0.92385 0.86314 1.21776 0.98229 0.95122 1.02144
1.21124 0.97310 1.02388 0.95008 1.20463 1.02477 0.97138 0.95427
1.21119 0.97440 0.95902 1.01284 1.20725 1.00518 0.91554 0.81694
0.86945 1.22734 0.74327 0.82731 0.86129 1.90693 1.46986 1.79842
1.23569 1.84453 1.66753 1.30076 1.50795 1.20550 0.93352 0.96644
0.97021 1.21215 1.01081 0.91823 1.09729 0.91076 0.86581 0.87178
0.88742 0.88687 0.89081 0.91337 0.91324 0.90148 0.91499 0.91305
0.92029 0.91513 0.89358 0.90755 0.73383 0.87650 0.85003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.84 13.96 55.48 0.77 -25.06 16
2 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16
3 Si 0.91 22.07 28.62 -169.99 -4.86 17.20 16
4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
6 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.39 -11.19 9.95 30.89 0.31 -10.89 16
8 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16
9 O -0.22 -5.89 8.59 0.05 0.00 -5.89 16
10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16
11 C -0.19 -3.91 9.99 -39.40 -0.39 -4.30 16
12 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16
13 C -0.16 -2.70 4.38 -104.57 -0.46 -3.16 16
14 C -0.08 -0.87 4.13 -29.04 -0.12 -0.99 16
15 C 0.51 6.62 6.97 -10.99 -0.08 6.54 16
16 O -0.50 -8.76 12.33 -20.03 -0.25 -9.00 16
17 N -0.61 -5.67 2.16 -166.45 -0.36 -6.03 16
18 C 0.11 0.59 5.93 -3.12 -0.02 0.57 16
19 C -0.13 -0.56 5.71 -27.48 -0.16 -0.71 16
20 C -0.12 -0.69 5.50 -28.02 -0.15 -0.84 16
21 C -0.12 -0.76 5.15 -29.79 -0.15 -0.91 16
22 C -0.12 -1.13 4.71 -28.58 -0.13 -1.26 16
23 C 0.16 1.58 2.52 -69.13 -0.17 1.41 16
24 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16
25 C 0.50 6.75 5.44 36.00 0.20 6.95 16
26 O -0.52 -8.73 16.53 -20.50 -0.34 -9.07 16
27 O -0.51 -6.46 11.33 -47.11 -0.53 -6.99 16
28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16
29 C -0.22 -4.89 9.17 -39.40 -0.36 -5.25 16
30 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16
31 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16
32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16
33 H 0.09 0.87 7.52 -51.93 -0.39 0.48 16
34 H 0.09 0.85 7.83 -51.93 -0.41 0.45 16
35 H 0.09 0.42 5.79 -51.93 -0.30 0.12 16
36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.07 0.25 7.32 -51.93 -0.38 -0.13 16
38 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16
39 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16
40 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16
41 H 0.06 0.32 7.36 -51.93 -0.38 -0.07 16
42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
43 H 0.09 0.89 7.49 -51.93 -0.39 0.50 16
44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.41 4.14 9.10 45.56 0.41 4.55 16
46 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16
47 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16
LS Contribution 378.13 15.07 5.70 5.70
Total: -1.00 -35.89 378.13 -8.43 -44.33
By element:
Atomic # 1 Polarization: 10.95 SS G_CDS: -5.74 Total: 5.21 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -2.82 Total: -10.39 kcal
Atomic # 7 Polarization: -31.51 SS G_CDS: 0.41 Total: -31.09 kcal
Atomic # 8 Polarization: -29.83 SS G_CDS: -1.12 Total: -30.95 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -35.89 -8.43 -44.33 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601073877.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.615 kcal
(2) G-P(sol) polarization free energy of solvation -35.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.941 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds