Wall clock time and date at job start Wed Apr 1 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00217 * 2 1 4 4 H 1.48497 * 109.46999 * 269.99864 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00312 * 3 2 1 6 6 H 1.48506 * 109.47180 * 150.00127 * 3 2 1 7 7 C 1.38658 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00172 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00040 * 185.09078 * 9 7 2 11 11 C 1.38876 * 120.06806 * 174.45231 * 10 9 7 12 12 C 1.38099 * 119.93026 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06723 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.92866 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47365 * 89.99471 * 14 13 12 16 16 O 1.21279 * 120.00137 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00169 * 179.97438 * 15 14 13 18 18 C 1.47610 * 118.64114 * 3.69914 * 17 15 14 19 19 C 1.53600 * 112.33893 * 222.03311 * 18 17 15 20 20 C 1.50883 * 109.95134 * 40.83050 * 19 18 17 21 21 C 1.52562 * 109.35883 * 268.02240 * 20 19 18 22 22 C 1.47095 * 114.32710 * 85.01761 * 21 20 19 23 23 C 1.44582 * 118.64683 * 183.96036 * 17 15 14 24 24 H 1.09003 * 109.44792 * 209.26805 * 23 17 15 25 25 C 1.50697 * 109.45000 * 329.21733 * 23 17 15 26 26 O 1.20826 * 120.00293 * 137.39060 * 25 23 17 27 27 O 1.34237 * 119.99747 * 317.39354 * 25 23 17 28 28 C 1.38302 * 120.14057 * 359.97438 * 13 12 11 29 29 C 1.38100 * 120.06546 * 0.02562 * 28 13 12 30 30 H 0.96998 * 119.99453 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.03617 * 0.04205 * 11 10 9 32 32 H 1.08000 * 119.96964 * 180.25674 * 12 11 10 33 33 H 1.09005 * 109.46506 * 209.99848 * 14 13 12 34 34 H 1.08999 * 109.47041 * 329.98822 * 14 13 12 35 35 H 1.08999 * 108.94512 * 342.83485 * 18 17 15 36 36 H 1.09000 * 108.94973 * 101.46329 * 18 17 15 37 37 H 1.09005 * 109.50941 * 280.63936 * 19 18 17 38 38 H 1.08999 * 109.26287 * 160.87368 * 19 18 17 39 39 H 1.09008 * 109.48594 * 148.05636 * 20 19 18 40 40 H 1.08992 * 109.51128 * 28.00625 * 20 19 18 41 41 H 1.08993 * 108.51728 * 323.75822 * 21 20 19 42 42 H 1.09001 * 108.38820 * 206.17601 * 21 20 19 43 43 H 1.08998 * 109.32968 * 176.93506 * 22 21 20 44 44 H 1.09001 * 109.18841 * 57.36490 * 22 21 20 45 45 H 0.96704 * 116.99445 * 179.97438 * 27 25 23 46 46 H 1.08003 * 119.96624 * 180.02562 * 28 13 12 47 47 H 1.08002 * 120.03126 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9734 -2.4057 -0.1089 11 6 5.3551 -2.4719 -0.2320 12 6 5.9789 -3.6990 -0.3420 13 6 5.2293 -4.8612 -0.3292 14 6 5.9133 -6.1986 -0.4501 15 6 6.2654 -6.7087 0.9234 16 8 5.9878 -6.0513 1.9041 17 7 6.8879 -7.8961 1.0622 18 6 7.2847 -8.6333 -0.1534 19 6 6.9999 -10.1385 -0.0425 20 6 5.6654 -10.3622 0.6251 21 6 5.8715 -10.5140 2.1291 22 6 5.9235 -9.2415 2.8651 23 6 7.1343 -8.3978 2.3956 24 1 8.0293 -9.0200 2.3897 25 6 7.3346 -7.2395 3.3386 26 8 6.8223 -7.2556 4.4327 27 8 8.0822 -6.1898 2.9629 28 6 3.8532 -4.7985 -0.2057 29 6 3.2235 -3.5744 -0.0953 30 1 -0.4849 0.8401 0.0004 31 1 5.9411 -1.5648 -0.2414 32 1 7.0538 -3.7515 -0.4336 33 1 5.2440 -6.9059 -0.9400 34 1 6.8224 -6.0896 -1.0414 35 1 6.7368 -8.2314 -1.0057 36 1 8.3521 -8.4900 -0.3217 37 1 7.7834 -10.6148 0.5471 38 1 6.9825 -10.5758 -1.0408 39 1 5.2071 -11.2678 0.2275 40 1 5.0141 -9.5100 0.4315 41 1 6.8053 -11.0500 2.2982 42 1 5.0530 -11.1122 2.5297 43 1 6.0176 -9.4452 3.9318 44 1 5.0040 -8.6849 2.6839 45 1 8.1816 -5.4706 3.6017 46 1 3.2705 -5.7079 -0.1956 47 1 2.1488 -3.5262 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:15 Heat of formation + Delta-G solvation = -122.941237 kcal Electronic energy + Delta-G solvation = -31232.345694 eV Core-core repulsion = 26960.041936 eV Total energy + Delta-G solvation = -4272.303758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37585 -39.46680 -38.98385 -37.93225 -36.60349 -35.93869 -34.27512 -33.29172 -32.44998 -31.48064 -30.21456 -28.21741 -26.62607 -26.25499 -24.84656 -22.77074 -22.17770 -22.00714 -20.92445 -20.45972 -19.05003 -17.93853 -17.86364 -17.55504 -17.24228 -16.85997 -16.08950 -15.58481 -15.42727 -14.92152 -14.81659 -14.68032 -14.45180 -14.15439 -13.99349 -13.74245 -13.58604 -13.47837 -13.25729 -12.96950 -12.80307 -12.64615 -12.39117 -12.19676 -12.11798 -11.70480 -11.50188 -11.33169 -11.28210 -11.15610 -11.09892 -10.95150 -10.87037 -10.72452 -10.65758 -10.44958 -10.13485 -9.78287 -9.36008 -8.97341 -8.83717 -8.21006 -7.28591 -6.39324 -4.05606 2.07072 2.18590 2.26586 2.58076 2.82943 3.05893 3.24133 3.27192 3.42839 4.18334 4.26042 4.31169 4.33919 4.43755 4.55293 4.63801 4.76305 4.85224 4.91888 5.04782 5.09715 5.15630 5.16916 5.18963 5.23964 5.27807 5.46436 5.49414 5.57827 5.66291 5.70173 5.72257 5.76975 5.78434 5.85697 5.98955 6.15570 6.23653 6.35282 6.58709 6.68192 6.81622 6.99614 7.10243 7.24328 7.33103 7.64215 7.82987 8.00486 8.06508 8.09341 8.96115 9.58927 10.68440 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002541 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.567787 B =11018.401946 C =11347.042837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.163 3.837 11 C -0.192 4.192 12 C -0.059 4.059 13 C -0.164 4.164 14 C -0.076 4.076 15 C 0.512 3.488 16 O -0.498 6.498 17 N -0.609 5.609 18 C 0.107 3.893 19 C -0.135 4.135 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.119 4.119 23 C 0.161 3.839 24 H 0.113 0.887 25 C 0.498 3.502 26 O -0.522 6.522 27 O -0.510 6.510 28 C -0.057 4.057 29 C -0.219 4.219 30 H 0.279 0.721 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.408 0.592 46 H 0.105 0.895 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.568 -22.958 -1.671 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.111 3.889 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.165 4.165 14 C -0.115 4.115 15 C 0.301 3.699 16 O -0.372 6.372 17 N -0.346 5.346 18 C -0.015 4.015 19 C -0.173 4.173 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.157 4.157 23 C 0.055 3.945 24 H 0.131 0.869 25 C 0.341 3.659 26 O -0.411 6.411 27 O -0.321 6.321 28 C -0.076 4.076 29 C -0.238 4.238 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.266 0.734 46 H 0.123 0.877 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.116 -22.547 -1.096 28.329 hybrid contribution 0.178 1.031 0.450 1.139 sum 17.295 -21.516 -0.646 27.613 Atomic orbital electron populations 1.69648 1.05573 1.28456 1.48160 1.24466 0.95024 0.98818 0.95701 0.86180 0.80377 0.81429 0.78916 1.19885 1.20799 1.18344 1.20775 0.76917 0.96631 1.52099 0.87647 1.83569 1.22605 1.25813 1.80272 1.19128 0.91717 0.85455 0.92608 1.20146 0.91957 0.97780 1.11207 1.20385 0.97989 0.91330 0.98019 1.18693 0.93429 0.92385 1.12005 1.20437 1.01616 0.96363 0.93118 1.21189 0.76196 0.79789 0.92747 1.90677 1.51244 1.55418 1.39896 1.47855 1.60779 1.20991 1.04954 1.22004 1.00749 0.92385 0.86314 1.21776 0.98229 0.95122 1.02144 1.21124 0.97310 1.02388 0.95008 1.20463 1.02477 0.97138 0.95427 1.21119 0.97440 0.95902 1.01284 1.20725 1.00518 0.91554 0.81694 0.86945 1.22734 0.74327 0.82731 0.86129 1.90693 1.46986 1.79842 1.23569 1.84453 1.66753 1.30076 1.50795 1.20550 0.93352 0.96644 0.97021 1.21215 1.01081 0.91823 1.09729 0.91076 0.86581 0.87178 0.88742 0.88687 0.89081 0.91337 0.91324 0.90148 0.91499 0.91305 0.92029 0.91513 0.89358 0.90755 0.73383 0.87650 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.48 0.77 -25.06 16 2 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 3 Si 0.91 22.07 28.62 -169.99 -4.86 17.20 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.39 -11.19 9.95 30.89 0.31 -10.89 16 8 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 9 O -0.22 -5.89 8.59 0.05 0.00 -5.89 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.19 -3.91 9.99 -39.40 -0.39 -4.30 16 12 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 13 C -0.16 -2.70 4.38 -104.57 -0.46 -3.16 16 14 C -0.08 -0.87 4.13 -29.04 -0.12 -0.99 16 15 C 0.51 6.62 6.97 -10.99 -0.08 6.54 16 16 O -0.50 -8.76 12.33 -20.03 -0.25 -9.00 16 17 N -0.61 -5.67 2.16 -166.45 -0.36 -6.03 16 18 C 0.11 0.59 5.93 -3.12 -0.02 0.57 16 19 C -0.13 -0.56 5.71 -27.48 -0.16 -0.71 16 20 C -0.12 -0.69 5.50 -28.02 -0.15 -0.84 16 21 C -0.12 -0.76 5.15 -29.79 -0.15 -0.91 16 22 C -0.12 -1.13 4.71 -28.58 -0.13 -1.26 16 23 C 0.16 1.58 2.52 -69.13 -0.17 1.41 16 24 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 25 C 0.50 6.75 5.44 36.00 0.20 6.95 16 26 O -0.52 -8.73 16.53 -20.50 -0.34 -9.07 16 27 O -0.51 -6.46 11.33 -47.11 -0.53 -6.99 16 28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 29 C -0.22 -4.89 9.17 -39.40 -0.36 -5.25 16 30 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.09 0.87 7.52 -51.93 -0.39 0.48 16 34 H 0.09 0.85 7.83 -51.93 -0.41 0.45 16 35 H 0.09 0.42 5.79 -51.93 -0.30 0.12 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.25 7.32 -51.93 -0.38 -0.13 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 41 H 0.06 0.32 7.36 -51.93 -0.38 -0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.89 7.49 -51.93 -0.39 0.50 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.41 4.14 9.10 45.56 0.41 4.55 16 46 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 47 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -35.89 378.13 -8.43 -44.33 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.74 Total: 5.21 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.82 Total: -10.39 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.41 Total: -31.09 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.12 Total: -30.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.89 -8.43 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.615 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds