Wall clock time and date at job start Wed Apr 1 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00217 * 2 1 4 4 H 1.48497 * 109.46999 * 269.99864 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00312 * 3 2 1 6 6 H 1.48506 * 109.47180 * 150.00127 * 3 2 1 7 7 C 1.38658 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00172 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00040 * 185.09078 * 9 7 2 11 11 C 1.38876 * 120.06806 * 174.45231 * 10 9 7 12 12 C 1.38099 * 119.93026 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06723 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.92866 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47365 * 89.99471 * 14 13 12 16 16 O 1.21279 * 120.00137 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00169 * 179.97438 * 15 14 13 18 18 C 1.47610 * 118.64114 * 3.69914 * 17 15 14 19 19 C 1.53600 * 112.33893 * 222.03311 * 18 17 15 20 20 C 1.50883 * 109.95134 * 40.83050 * 19 18 17 21 21 C 1.52562 * 109.35883 * 268.02240 * 20 19 18 22 22 C 1.47095 * 114.32710 * 85.01761 * 21 20 19 23 23 C 1.44582 * 118.64683 * 183.96036 * 17 15 14 24 24 H 1.09003 * 109.44792 * 209.26805 * 23 17 15 25 25 C 1.50697 * 109.45000 * 329.21733 * 23 17 15 26 26 O 1.20826 * 120.00293 * 137.39060 * 25 23 17 27 27 O 1.34237 * 119.99747 * 317.39354 * 25 23 17 28 28 C 1.38302 * 120.14057 * 359.97438 * 13 12 11 29 29 C 1.38100 * 120.06546 * 0.02562 * 28 13 12 30 30 H 0.96998 * 119.99453 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.03617 * 0.04205 * 11 10 9 32 32 H 1.08000 * 119.96964 * 180.25674 * 12 11 10 33 33 H 1.09005 * 109.46506 * 209.99848 * 14 13 12 34 34 H 1.08999 * 109.47041 * 329.98822 * 14 13 12 35 35 H 1.08999 * 108.94512 * 342.83485 * 18 17 15 36 36 H 1.09000 * 108.94973 * 101.46329 * 18 17 15 37 37 H 1.09005 * 109.50941 * 280.63936 * 19 18 17 38 38 H 1.08999 * 109.26287 * 160.87368 * 19 18 17 39 39 H 1.09008 * 109.48594 * 148.05636 * 20 19 18 40 40 H 1.08992 * 109.51128 * 28.00625 * 20 19 18 41 41 H 1.08993 * 108.51728 * 323.75822 * 21 20 19 42 42 H 1.09001 * 108.38820 * 206.17601 * 21 20 19 43 43 H 1.08998 * 109.32968 * 176.93506 * 22 21 20 44 44 H 1.09001 * 109.18841 * 57.36490 * 22 21 20 45 45 H 0.96704 * 116.99445 * 179.97438 * 27 25 23 46 46 H 1.08003 * 119.96624 * 180.02562 * 28 13 12 47 47 H 1.08002 * 120.03126 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9734 -2.4057 -0.1089 11 6 5.3551 -2.4719 -0.2320 12 6 5.9789 -3.6990 -0.3420 13 6 5.2293 -4.8612 -0.3292 14 6 5.9133 -6.1986 -0.4501 15 6 6.2654 -6.7087 0.9234 16 8 5.9878 -6.0513 1.9041 17 7 6.8879 -7.8961 1.0622 18 6 7.2847 -8.6333 -0.1534 19 6 6.9999 -10.1385 -0.0425 20 6 5.6654 -10.3622 0.6251 21 6 5.8715 -10.5140 2.1291 22 6 5.9235 -9.2415 2.8651 23 6 7.1343 -8.3978 2.3956 24 1 8.0293 -9.0200 2.3897 25 6 7.3346 -7.2395 3.3386 26 8 6.8223 -7.2556 4.4327 27 8 8.0822 -6.1898 2.9629 28 6 3.8532 -4.7985 -0.2057 29 6 3.2235 -3.5744 -0.0953 30 1 -0.4849 0.8401 0.0004 31 1 5.9411 -1.5648 -0.2414 32 1 7.0538 -3.7515 -0.4336 33 1 5.2440 -6.9059 -0.9400 34 1 6.8224 -6.0896 -1.0414 35 1 6.7368 -8.2314 -1.0057 36 1 8.3521 -8.4900 -0.3217 37 1 7.7834 -10.6148 0.5471 38 1 6.9825 -10.5758 -1.0408 39 1 5.2071 -11.2678 0.2275 40 1 5.0141 -9.5100 0.4315 41 1 6.8053 -11.0500 2.2982 42 1 5.0530 -11.1122 2.5297 43 1 6.0176 -9.4452 3.9318 44 1 5.0040 -8.6849 2.6839 45 1 8.1816 -5.4706 3.6017 46 1 3.2705 -5.7079 -0.1956 47 1 2.1488 -3.5262 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:14 Heat of formation + Delta-G solvation = -145.986768 kcal Electronic energy + Delta-G solvation = -31233.345023 eV Core-core repulsion = 26960.041936 eV Total energy + Delta-G solvation = -4273.303087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.27213 -40.93958 -40.23631 -38.88286 -38.12510 -36.97727 -35.02136 -34.54331 -33.92768 -32.75579 -31.81234 -29.26595 -27.84564 -27.01935 -26.54393 -23.72900 -23.47728 -23.16717 -21.93828 -21.31426 -20.02466 -19.77308 -19.10895 -18.91859 -18.44386 -17.71177 -16.96082 -16.75516 -16.38970 -16.26237 -16.11706 -15.75473 -15.66610 -15.38646 -15.24413 -15.08833 -14.90291 -14.48189 -14.34058 -14.17416 -14.07544 -14.02021 -13.60010 -13.30814 -13.05025 -12.87788 -12.79785 -12.50666 -12.44832 -12.36738 -12.32290 -12.00857 -11.92401 -11.68672 -11.60900 -11.48486 -11.29681 -11.27590 -10.95493 -10.77350 -9.79429 -9.72690 -8.98828 -8.52036 -6.24643 0.58178 0.60590 1.22580 1.28913 1.33663 1.50323 1.63259 1.97262 2.21607 2.26648 2.75373 3.05617 3.13982 3.57460 3.64429 3.78040 3.90446 4.02065 4.03816 4.09106 4.15421 4.22063 4.32323 4.42184 4.44166 4.55676 4.60507 4.62825 4.68205 4.79006 4.80341 4.96197 5.02332 5.04012 5.22768 5.24923 5.26554 5.28534 5.36690 5.39530 5.43505 5.55668 5.62252 5.73140 5.73484 5.78729 5.90093 6.20257 6.30830 6.82250 7.02067 7.17351 7.57156 8.59964 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002541 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.567787 B =11018.401946 C =11347.042837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.118 3.882 11 C -0.193 4.193 12 C -0.054 4.054 13 C -0.136 4.136 14 C -0.074 4.074 15 C 0.508 3.492 16 O -0.557 6.557 17 N -0.595 5.595 18 C 0.097 3.903 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.111 4.111 23 C 0.162 3.838 24 H 0.151 0.849 25 C 0.492 3.508 26 O -0.567 6.567 27 O -0.509 6.509 28 C -0.065 4.065 29 C -0.240 4.240 30 H 0.285 0.715 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.414 0.586 46 H 0.129 0.871 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.704 -25.804 -3.760 33.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.477 4.477 8 H 0.095 0.905 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.212 4.212 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.113 4.113 15 C 0.298 3.702 16 O -0.436 6.436 17 N -0.330 5.330 18 C -0.023 4.023 19 C -0.167 4.167 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.150 4.150 23 C 0.056 3.944 24 H 0.169 0.831 25 C 0.337 3.663 26 O -0.459 6.459 27 O -0.321 6.321 28 C -0.083 4.083 29 C -0.259 4.259 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.273 0.727 46 H 0.147 0.853 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.308 -25.472 -3.236 33.366 hybrid contribution -0.902 1.542 1.100 2.098 sum 20.405 -23.930 -2.136 31.521 Atomic orbital electron populations 1.69734 1.06934 1.29626 1.50270 1.25308 0.95916 1.02220 0.95474 0.85191 0.78649 0.77224 0.79464 1.18603 1.19132 1.18990 1.20703 0.78192 0.96071 1.52708 0.90491 1.83506 1.21167 1.27503 1.83234 1.19690 0.93326 0.84996 0.95035 1.20510 0.90470 0.99940 1.10326 1.20924 1.00179 0.90111 0.96008 1.19291 0.92522 0.95088 1.06801 1.20589 1.03696 0.93721 0.93275 1.21359 0.75952 0.80541 0.92350 1.90686 1.53879 1.57469 1.41567 1.47875 1.59081 1.20080 1.05964 1.22426 1.02421 0.92927 0.84548 1.21784 0.97231 0.94232 1.03469 1.21133 0.98288 1.02166 0.94280 1.20465 1.03656 0.95284 0.95940 1.21052 0.95802 0.96956 1.01173 1.20897 1.01968 0.90330 0.81181 0.83138 1.23554 0.73229 0.83381 0.86112 1.90669 1.48692 1.80824 1.25693 1.84426 1.66354 1.30265 1.51029 1.20878 0.95014 0.95874 0.96540 1.21229 1.00002 0.93469 1.11229 0.90537 0.85438 0.82799 0.85559 0.84395 0.87568 0.88951 0.90092 0.87901 0.90370 0.93254 0.89757 0.91707 0.90680 0.94293 0.72656 0.85327 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.06 13.96 21.61 0.30 -56.76 16 2 C 0.01 0.53 5.49 84.83 0.47 1.00 16 3 Si 0.97 47.07 28.62 68.60 1.96 49.03 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.40 -24.73 9.95 67.92 0.68 -24.06 16 8 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 9 O -0.25 -14.10 8.59 -22.75 -0.20 -14.29 16 10 C 0.12 5.88 6.65 22.57 0.15 6.03 16 11 C -0.19 -7.77 9.99 22.39 0.22 -7.55 16 12 C -0.05 -1.71 9.69 22.25 0.22 -1.50 16 13 C -0.14 -4.07 4.38 -19.83 -0.09 -4.16 16 14 C -0.07 -1.32 4.13 29.10 0.12 -1.20 16 15 C 0.51 11.44 6.97 87.65 0.61 12.06 16 16 O -0.56 -18.91 12.33 21.44 0.26 -18.65 16 17 N -0.60 -8.68 2.16 -798.91 -1.73 -10.41 16 18 C 0.10 0.47 5.93 86.37 0.51 0.98 16 19 C -0.13 -0.32 5.71 30.11 0.17 -0.15 16 20 C -0.12 -0.92 5.50 29.76 0.16 -0.75 16 21 C -0.12 -1.18 5.15 28.61 0.15 -1.03 16 22 C -0.11 -2.00 4.71 29.39 0.14 -1.86 16 23 C 0.16 2.76 2.52 45.24 0.11 2.87 16 24 H 0.15 1.44 8.07 -2.39 -0.02 1.42 16 25 C 0.49 12.96 5.44 71.24 0.39 13.35 16 26 O -0.57 -19.47 16.53 23.64 0.39 -19.08 16 27 O -0.51 -12.22 11.33 -43.99 -0.50 -12.72 16 28 C -0.06 -2.38 9.69 22.25 0.22 -2.17 16 29 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 30 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 31 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.13 1.58 7.52 -2.38 -0.02 1.56 16 34 H 0.14 1.42 7.83 -2.39 -0.02 1.40 16 35 H 0.11 0.24 5.79 -2.39 -0.01 0.23 16 36 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.08 0.07 7.32 -2.38 -0.02 0.05 16 38 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.05 0.58 7.48 -2.39 -0.02 0.56 16 41 H 0.08 0.51 7.36 -2.39 -0.02 0.49 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.07 1.53 7.49 -2.39 -0.02 1.51 16 44 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.41 8.30 9.10 -74.05 -0.67 7.62 16 46 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 47 H 0.10 5.36 5.64 -2.91 -0.02 5.34 16 Total: -1.00 -87.45 378.13 5.27 -82.18 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.34 Total: 19.95 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.43 Total: -19.25 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.43 Total: -67.17 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -0.04 Total: -64.75 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.96 Total: 49.03 kcal Total: -87.45 5.27 -82.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.806 kcal (2) G-P(sol) polarization free energy of solvation -87.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds