Wall clock time and date at job start Wed Apr 1 2020 04:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47187 * 59.99733 * 3 2 1 6 6 H 1.48496 * 109.47149 * 299.99890 * 3 2 1 7 7 C 1.38700 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99805 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.35521 * 117.00136 * 174.85870 * 9 7 2 11 11 C 1.38831 * 120.15610 * 5.93001 * 10 9 7 12 12 C 1.38035 * 120.07140 * 179.97438 * 11 10 9 13 13 C 1.38579 * 120.39649 * 359.97388 * 12 11 10 14 14 C 1.37824 * 120.32390 * 0.02562 * 13 12 11 15 15 C 1.39660 * 119.92296 * 359.78918 * 14 13 12 16 16 C 1.47534 * 120.20154 * 180.25159 * 15 14 13 17 17 O 1.21591 * 120.00401 * 233.70748 * 16 15 14 18 18 N 1.34776 * 119.99696 * 53.70239 * 16 15 14 19 19 C 1.46927 * 120.63054 * 355.84471 * 18 16 15 20 20 C 1.53631 * 108.54354 * 126.36976 * 19 18 16 21 21 C 1.53043 * 109.24121 * 54.85415 * 20 19 18 22 22 C 1.53039 * 109.53888 * 298.51710 * 21 20 19 23 23 H 1.08999 * 109.49438 * 301.40910 * 22 21 20 24 24 C 1.53004 * 109.52422 * 181.33446 * 22 21 20 25 25 C 1.52998 * 109.47337 * 175.14248 * 24 22 21 26 26 C 1.50692 * 109.47154 * 179.97438 * 25 24 22 27 27 O 1.20826 * 120.00193 * 359.97438 * 26 25 24 28 28 O 1.34236 * 120.00060 * 179.97438 * 26 25 24 29 29 C 1.46925 * 120.63052 * 176.12731 * 18 16 15 30 30 H 0.96998 * 119.99896 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.96925 * 359.95078 * 11 10 9 32 32 H 1.07999 * 119.80003 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.83199 * 180.02562 * 13 12 11 34 34 H 1.08002 * 120.03685 * 180.02562 * 14 13 12 35 35 H 1.09002 * 109.59039 * 246.19914 * 19 18 16 36 36 H 1.08997 * 109.58966 * 6.62719 * 19 18 16 37 37 H 1.08995 * 109.63243 * 294.86666 * 20 19 18 38 38 H 1.08994 * 109.45706 * 174.73843 * 20 19 18 39 39 H 1.08996 * 109.45709 * 178.49133 * 21 20 19 40 40 H 1.09006 * 109.44387 * 58.52897 * 21 20 19 41 41 H 1.09001 * 109.46788 * 295.14526 * 24 22 21 42 42 H 1.09000 * 109.47239 * 55.13833 * 24 22 21 43 43 H 1.09004 * 109.46691 * 299.99818 * 25 24 22 44 44 H 1.09000 * 109.46936 * 59.99215 * 25 24 22 45 45 H 0.96700 * 116.99771 * 180.02562 * 28 26 25 46 46 H 1.08999 * 109.59038 * 353.37191 * 29 18 16 47 47 H 1.09006 * 109.59060 * 113.80086 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8904 2.3964 -1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0686 -3.5028 -0.1071 11 6 3.4554 -3.4407 -0.0874 12 6 4.2012 -4.5971 -0.1966 13 6 3.5743 -5.8261 -0.3260 14 6 2.1986 -5.9068 -0.3476 15 6 1.4308 -4.7457 -0.2341 16 6 -0.0423 -4.8254 -0.2508 17 8 -0.6787 -4.1534 -1.0393 18 7 -0.6826 -5.6433 0.6079 19 6 0.0740 -6.5286 1.5038 20 6 -0.3958 -6.2819 2.9456 21 6 -1.9138 -6.4622 3.0192 22 6 -2.5955 -5.4382 2.1089 23 1 -2.3139 -4.4317 2.4185 24 6 -4.1141 -5.5968 2.2081 25 6 -4.7962 -4.4962 1.3931 26 6 -6.2918 -4.6528 1.4904 27 8 -6.7638 -5.5526 2.1441 28 8 -7.0998 -3.7926 0.8507 29 6 -2.1506 -5.6712 0.6616 30 1 -0.4850 -0.8400 0.0004 31 1 3.9513 -2.4866 0.0132 32 1 5.2798 -4.5436 -0.1811 33 1 4.1667 -6.7252 -0.4104 34 1 1.7148 -6.8671 -0.4482 35 1 -0.1081 -7.5678 1.2301 36 1 1.1384 -6.3081 1.4221 37 1 -0.1349 -5.2675 3.2473 38 1 0.0881 -6.9956 3.6123 39 1 -2.2476 -6.3142 4.0462 40 1 -2.1758 -7.4689 2.6936 41 1 -4.4039 -6.5717 1.8163 42 1 -4.4201 -5.5189 3.2514 43 1 -4.5063 -3.5212 1.7850 44 1 -4.4901 -4.5740 0.3498 45 1 -8.0520 -3.9332 0.9431 46 1 -2.5546 -4.8849 0.0240 47 1 -2.5104 -6.6420 0.3206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:55 Heat of formation + Delta-G solvation = -168.889836 kcal Electronic energy + Delta-G solvation = -31100.873808 eV Core-core repulsion = 26826.577569 eV Total energy + Delta-G solvation = -4274.296238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74492 -41.29965 -40.40200 -38.70719 -38.19879 -37.22635 -35.66009 -34.35178 -33.33331 -32.32838 -30.78479 -30.64369 -27.15946 -26.79605 -26.30897 -24.14777 -23.50562 -23.21749 -21.80480 -21.32111 -20.46982 -20.26515 -19.15241 -18.70504 -18.05627 -17.50071 -17.42727 -17.14057 -16.86150 -16.09954 -16.04581 -15.75897 -15.59644 -15.46301 -15.34750 -15.04120 -14.81848 -14.65953 -14.37232 -14.30666 -13.91766 -13.76925 -13.55889 -13.10554 -12.96274 -12.82783 -12.59781 -12.52297 -12.50760 -12.38596 -12.23976 -11.99082 -11.92347 -11.80690 -11.69747 -11.60142 -11.48759 -11.36971 -10.81303 -10.79408 -9.84937 -9.62132 -9.14973 -8.96989 -6.27560 0.17193 0.62204 1.13148 1.45430 1.60900 1.66690 1.73205 2.06378 2.11555 2.32502 2.79580 3.07284 3.26663 3.51133 3.69868 3.75314 3.77290 4.02894 4.03804 4.05879 4.14476 4.20120 4.24581 4.31711 4.46637 4.51641 4.54008 4.57918 4.59678 4.74906 4.79534 4.81935 4.86558 4.88275 5.01302 5.03626 5.09706 5.17290 5.17722 5.23839 5.43901 5.44828 5.54160 5.56948 5.62817 5.64174 5.99308 6.21121 6.36360 6.83542 6.94730 7.19824 7.59518 8.46082 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.003646 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.935727 B = 7677.922071 C =10083.968699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.044 4.044 3 Si 1.151 2.849 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.097 0.903 9 O -0.235 6.235 10 C 0.149 3.851 11 C -0.248 4.248 12 C -0.047 4.047 13 C -0.187 4.187 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.565 3.435 17 O -0.588 6.588 18 N -0.605 5.605 19 C 0.094 3.906 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.097 4.097 23 H 0.048 0.952 24 C -0.085 4.085 25 C -0.126 4.126 26 C 0.490 3.510 27 O -0.545 6.545 28 O -0.518 6.518 29 C 0.111 3.889 30 H 0.258 0.742 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.427 0.573 46 H 0.061 0.939 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -16.880 6.308 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.241 4.241 3 Si 0.966 3.034 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.114 0.886 9 O -0.140 6.140 10 C 0.097 3.903 11 C -0.267 4.267 12 C -0.065 4.065 13 C -0.205 4.205 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.355 3.645 17 O -0.468 6.468 18 N -0.338 5.338 19 C -0.028 4.028 20 C -0.171 4.171 21 C -0.143 4.143 22 C -0.116 4.116 23 H 0.067 0.933 24 C -0.123 4.123 25 C -0.163 4.163 26 C 0.334 3.666 27 O -0.436 6.436 28 O -0.332 6.332 29 C -0.011 4.011 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.289 0.711 46 H 0.079 0.921 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.874 -15.022 6.058 16.306 hybrid contribution -0.838 -0.979 -0.191 1.303 sum -2.712 -16.002 5.868 17.258 Atomic orbital electron populations 1.70603 1.07970 1.30084 1.45829 1.28494 0.96814 1.05129 0.93688 0.82513 0.74121 0.68477 0.78240 1.17733 1.19345 1.19834 1.22737 0.93753 0.82846 1.57318 0.88605 1.83683 1.36837 1.13127 1.80370 1.19748 0.91565 0.86414 0.92610 1.21306 0.92281 1.00986 1.12172 1.21425 1.00799 0.91133 0.93135 1.21204 0.93662 0.98546 1.07103 1.21223 0.94391 0.95408 0.94601 1.19132 0.92505 0.92855 1.18701 1.18543 0.87960 0.77997 0.79955 1.90729 1.69153 1.45496 1.41437 1.48065 1.07194 1.40633 1.37876 1.22363 0.97132 0.94200 0.89067 1.22001 0.97048 1.01901 0.96169 1.21541 0.93888 0.99183 0.99674 1.21483 0.95201 1.00083 0.94858 0.93325 1.21316 0.92045 0.98108 1.00865 1.21561 0.86505 1.03354 1.04900 1.23563 0.91108 0.77693 0.74219 1.90691 1.78150 1.34103 1.40633 1.84562 1.25086 1.54922 1.68615 1.21810 0.79076 1.02797 0.97423 0.93360 0.86093 0.82713 0.81523 0.82611 0.87816 0.89230 0.94511 0.87515 0.90330 0.89178 0.89592 0.90085 0.87727 0.87430 0.71088 0.92053 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.97 13.70 21.62 0.30 -59.67 16 2 C -0.04 -2.65 5.49 84.85 0.47 -2.18 16 3 Si 1.15 49.58 29.92 68.60 2.05 51.63 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.49 -29.54 9.49 67.93 0.64 -28.90 16 8 H 0.10 5.28 5.21 -2.91 -0.02 5.27 16 9 O -0.23 -14.54 8.35 -16.41 -0.14 -14.67 16 10 C 0.15 7.53 6.64 22.91 0.15 7.69 16 11 C -0.25 -10.52 9.16 22.36 0.20 -10.31 16 12 C -0.05 -1.42 10.03 22.30 0.22 -1.20 16 13 C -0.19 -4.82 10.02 22.25 0.22 -4.60 16 14 C -0.04 -1.14 7.41 22.52 0.17 -0.97 16 15 C -0.23 -9.69 4.92 -19.99 -0.10 -9.79 16 16 C 0.57 25.23 6.87 86.70 0.60 25.83 16 17 O -0.59 -32.65 16.16 -0.39 -0.01 -32.65 16 18 N -0.61 -19.73 2.97 -821.81 -2.44 -22.17 16 19 C 0.09 2.13 5.53 86.51 0.48 2.60 16 20 C -0.13 -2.69 6.10 30.82 0.19 -2.50 16 21 C -0.11 -1.87 5.17 30.62 0.16 -1.71 16 22 C -0.10 -2.28 2.34 -10.72 -0.03 -2.30 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 C -0.09 -1.71 3.98 30.59 0.12 -1.59 16 25 C -0.13 -2.81 5.57 29.84 0.17 -2.64 16 26 C 0.49 11.04 8.33 71.23 0.59 11.63 16 27 O -0.54 -14.49 16.74 21.96 0.37 -14.12 16 28 O -0.52 -9.87 13.42 -51.48 -0.69 -10.57 16 29 C 0.11 3.13 5.31 86.36 0.46 3.59 16 30 H 0.26 18.24 7.97 -92.71 -0.74 17.50 16 31 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.16 3.46 7.32 -2.91 -0.02 3.43 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.18 4.70 -2.39 -0.01 2.17 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 43 H 0.10 2.45 8.14 -2.38 -0.02 2.44 16 44 H 0.11 2.48 6.70 -2.39 -0.02 2.47 16 45 H 0.43 4.07 9.10 -74.06 -0.67 3.40 16 46 H 0.06 2.14 5.74 -2.39 -0.01 2.12 16 47 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -90.71 384.76 4.53 -86.18 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.37 Total: 33.39 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.72 Total: -17.35 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.14 Total: -81.84 kcal Atomic # 8 Polarization: -71.55 SS G_CDS: -0.47 Total: -72.01 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Total: -90.71 4.53 -86.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.710 kcal (2) G-P(sol) polarization free energy of solvation -90.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds