Wall clock time and date at job start Wed Apr 1 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48507 * 109.47254 * 240.00318 * 3 2 1 5 5 H 1.48496 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47046 * 120.00413 * 3 2 1 7 7 C 1.39895 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 199.40261 * 7 2 1 9 9 C 1.41217 * 119.99769 * 19.39947 * 7 2 1 10 10 C 1.40832 * 120.18067 * 24.97465 * 9 7 2 11 11 C 1.36427 * 119.81123 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18820 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.82317 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00329 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47330 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.46948 * 54.99472 * 15 14 13 17 17 O 1.42903 * 109.46996 * 295.00298 * 15 14 13 18 18 C 1.52995 * 109.47334 * 174.99975 * 15 14 13 19 19 N 1.46904 * 109.47198 * 187.06698 * 18 15 14 20 20 C 1.49607 * 110.99835 * 291.64395 * 19 18 15 21 21 C 1.56738 * 99.23695 * 242.11034 * 20 19 18 22 22 C 1.55993 * 106.43400 * 42.22745 * 21 20 19 23 23 C 1.50234 * 110.99891 * 180.18011 * 19 18 15 24 24 C 1.50699 * 117.57508 * 296.57272 * 23 19 18 25 25 O 1.20824 * 120.00138 * 215.48540 * 24 23 19 26 26 O 1.34231 * 120.00272 * 35.48587 * 24 23 19 27 27 C 1.54886 * 103.48640 * 161.77195 * 23 19 18 28 28 C 1.39319 * 120.36216 * 0.25713 * 12 11 10 29 29 C 1.36442 * 120.18238 * 359.48620 * 28 12 11 30 30 H 0.96996 * 120.00471 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.09009 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91263 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47352 * 60.00336 * 14 13 12 34 34 H 1.09002 * 109.47330 * 300.00144 * 14 13 12 35 35 H 0.96700 * 113.99997 * 304.37427 * 17 15 14 36 36 H 1.09000 * 109.47218 * 307.06467 * 18 15 14 37 37 H 1.08998 * 109.47045 * 67.06814 * 18 15 14 38 38 H 1.09001 * 111.44354 * 359.61937 * 20 19 18 39 39 H 1.09001 * 111.44465 * 124.60238 * 20 19 18 40 40 H 1.08996 * 118.44356 * 181.30893 * 21 20 19 41 41 H 1.08998 * 114.52230 * 54.77123 * 22 21 20 42 42 H 1.08997 * 114.52439 * 188.44908 * 22 21 20 43 43 H 0.96699 * 117.00516 * 179.97438 * 26 24 23 44 44 H 1.08995 * 114.44144 * 181.54935 * 27 23 19 45 45 H 1.08992 * 114.47851 * 48.13434 * 27 23 19 46 46 H 1.08000 * 119.90672 * 179.72040 * 28 12 11 47 47 H 1.07996 * 120.08939 * 180.25566 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0422 -1.2381 0.3101 9 6 1.3623 -2.3996 -0.4073 10 6 0.2577 -2.3421 -1.2790 11 6 -0.3610 -3.4945 -1.6667 12 6 0.0972 -4.7258 -1.2033 13 8 -0.5239 -5.8672 -1.5932 14 6 -0.0045 -7.0960 -1.0812 15 6 -0.8271 -8.2646 -1.6276 16 1 -0.8434 -8.2196 -2.7166 17 8 -2.1632 -8.1814 -1.1275 18 6 -0.1967 -9.5851 -1.1809 19 7 -0.8830 -10.7035 -1.8412 20 6 -2.2841 -10.8460 -1.3363 21 6 -2.1827 -12.2812 -0.7144 22 6 -0.8150 -12.3426 0.0332 23 6 -0.2927 -12.0201 -1.4226 24 6 1.1462 -12.2857 -1.7834 25 8 1.4984 -13.4028 -2.0796 26 8 2.0365 -11.2812 -1.7758 27 6 -1.3883 -13.0455 -1.8062 28 6 1.1863 -4.7911 -0.3369 29 6 1.8196 -3.6483 0.0564 30 1 -0.4850 0.8400 0.0004 31 1 -0.0990 -1.3883 -1.6389 32 1 -1.2085 -3.4523 -2.3349 33 1 -0.0611 -7.0890 0.0073 34 1 1.0348 -7.2080 -1.3902 35 1 -2.2208 -8.1479 -0.1628 36 1 0.8586 -9.5945 -1.4537 37 1 -0.2935 -9.6866 -0.1000 38 1 -2.5121 -10.0978 -0.5771 39 1 -3.0067 -10.8151 -2.1518 40 1 -3.0743 -12.7150 -0.2618 41 1 -0.6664 -11.5533 0.7701 42 1 -0.5415 -13.3335 0.3955 43 1 2.9477 -11.5003 -2.0140 44 1 -1.1493 -14.0777 -1.5504 45 1 -1.7826 -12.9288 -2.8156 46 1 1.5326 -5.7493 0.0215 47 1 2.6662 -3.7010 0.7247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:08 Heat of formation + Delta-G solvation = -86.210650 kcal Electronic energy + Delta-G solvation = -30082.532330 eV Core-core repulsion = 25811.821330 eV Total energy + Delta-G solvation = -4270.711000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10253 -39.93238 -39.02808 -37.58049 -36.52083 -36.06472 -33.34639 -33.31150 -30.49395 -29.56399 -29.05745 -28.78497 -26.30949 -25.43930 -24.58932 -23.72463 -22.06503 -20.86097 -20.68670 -20.57232 -19.79153 -18.40440 -17.65968 -17.35628 -16.95019 -16.53375 -16.23377 -16.03610 -15.63731 -15.20131 -14.91579 -14.73199 -14.35296 -14.18534 -13.94979 -13.69959 -13.24595 -13.15369 -12.89598 -12.40463 -12.38171 -12.26454 -12.14750 -12.02016 -11.94122 -11.84097 -11.75533 -11.40984 -11.27346 -11.13420 -11.00080 -10.79937 -10.78337 -10.70973 -10.58581 -9.99260 -9.89335 -9.80633 -9.34516 -9.02043 -8.99500 -7.65716 -7.04722 -6.74181 -4.26081 1.66721 2.56547 2.78260 2.93763 3.07447 3.09632 3.20281 3.21800 3.62004 3.77395 3.84989 3.94298 4.04519 4.25721 4.37303 4.60220 4.76095 4.84464 4.94534 4.97307 5.10161 5.16425 5.17563 5.30109 5.37153 5.42024 5.47508 5.52680 5.60098 5.61406 5.66177 5.76764 6.00822 6.04767 6.05401 6.13497 6.21926 6.53263 6.71536 6.96477 7.10024 7.16976 7.43820 7.51306 7.53850 7.56690 7.77837 7.99358 8.18809 8.43749 8.64011 8.88637 8.97649 10.20715 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.001895 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.663397 B =14773.616846 C =15468.707195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.090 3.910 10 C -0.134 4.134 11 C -0.118 4.118 12 C -0.010 4.010 13 O -0.317 6.317 14 C 0.040 3.960 15 C 0.117 3.883 16 H 0.115 0.885 17 O -0.548 6.548 18 C 0.003 3.997 19 N -0.463 5.463 20 C 0.041 3.959 21 C -0.143 4.143 22 C -0.138 4.138 23 C 0.037 3.963 24 C 0.526 3.474 25 O -0.510 6.510 26 O -0.506 6.506 27 C -0.106 4.106 28 C -0.167 4.167 29 C -0.199 4.199 30 H 0.281 0.719 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.369 0.631 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.411 0.589 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -22.230 -0.035 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.087 3.913 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.053 4.053 13 O -0.233 6.233 14 C -0.037 4.037 15 C 0.057 3.943 16 H 0.133 0.867 17 O -0.353 6.353 18 C -0.125 4.125 19 N -0.188 5.188 20 C -0.086 4.086 21 C -0.162 4.162 22 C -0.177 4.177 23 C -0.054 4.054 24 C 0.367 3.633 25 O -0.397 6.397 26 O -0.318 6.318 27 C -0.144 4.144 28 C -0.186 4.186 29 C -0.219 4.219 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.216 0.784 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.271 0.729 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.374 -22.164 -1.388 22.462 hybrid contribution 1.503 0.487 1.595 2.245 sum -1.871 -21.676 0.207 21.758 Atomic orbital electron populations 1.69832 1.07533 1.29328 1.35559 1.25876 0.94690 1.01211 0.92337 0.86400 0.80176 0.80397 0.79921 1.18857 1.20393 1.19112 1.19416 0.98667 0.91466 1.40000 0.90572 1.17583 0.91724 0.92087 0.89879 1.20923 0.98844 0.96287 0.99301 1.19829 1.00950 0.90185 1.02701 1.18599 0.97572 0.84880 1.04235 1.85881 1.56128 1.11953 1.69328 1.23063 0.97747 0.84941 0.97943 1.21875 0.81751 0.89875 1.00776 0.86739 1.86672 1.26518 1.96143 1.25932 1.23109 1.00993 0.91331 0.97109 1.66820 1.02665 0.98728 1.50541 1.24053 0.90444 0.94143 0.99958 1.24741 0.96694 0.97637 0.97081 1.24803 0.96093 1.03142 0.93671 1.24246 0.87899 0.94700 0.98569 1.22026 0.86849 0.81950 0.72429 1.90729 1.80016 1.24407 1.44521 1.84569 1.24077 1.41545 1.81641 1.23735 0.93175 0.97104 1.00391 1.20393 0.98389 0.97711 1.02080 1.20552 1.03527 0.92526 1.05310 0.90826 0.85925 0.88428 0.93060 0.92215 0.78369 0.87487 0.93651 0.89219 0.88356 0.86353 0.90250 0.87825 0.72949 0.88292 0.89637 0.88968 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.59 11.08 55.55 0.62 -19.97 16 2 C 0.08 1.91 5.09 -17.34 -0.09 1.82 16 3 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.47 -12.30 9.03 -37.83 -0.34 -12.65 16 8 H 0.08 1.93 7.92 -52.49 -0.42 1.51 16 9 C 0.09 2.38 5.56 -106.80 -0.59 1.79 16 10 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 11 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 13 O -0.32 -6.38 10.09 -23.57 -0.24 -6.61 16 14 C 0.04 0.60 4.33 37.16 0.16 0.76 16 15 C 0.12 1.41 3.41 -26.73 -0.09 1.32 16 16 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 17 O -0.55 -6.57 10.60 -40.08 -0.42 -7.00 16 18 C 0.00 0.03 4.31 -3.82 -0.02 0.01 16 19 N -0.46 -4.45 5.60 -215.50 -1.21 -5.66 16 20 C 0.04 0.33 5.92 -0.29 0.00 0.33 16 21 C -0.14 -0.91 6.32 -91.84 -0.58 -1.49 16 22 C -0.14 -0.94 7.54 -26.00 -0.20 -1.14 16 23 C 0.04 0.33 1.68 -133.12 -0.22 0.11 16 24 C 0.53 5.25 8.16 36.01 0.29 5.54 16 25 O -0.51 -6.26 17.55 -18.75 -0.33 -6.59 16 26 O -0.51 -4.06 10.86 -39.26 -0.43 -4.48 16 27 C -0.11 -0.81 7.06 -28.21 -0.20 -1.01 16 28 C -0.17 -3.71 8.96 -39.83 -0.36 -4.07 16 29 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.12 3.27 6.25 -52.49 -0.33 2.94 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 34 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 35 H 0.37 3.30 8.62 45.56 0.39 3.69 16 36 H 0.11 1.08 5.71 -51.93 -0.30 0.79 16 37 H 0.05 0.40 6.94 -51.93 -0.36 0.03 16 38 H 0.09 0.71 5.42 -51.93 -0.28 0.43 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.53 7.17 -51.93 -0.37 0.16 16 42 H 0.10 0.62 7.90 -51.93 -0.41 0.20 16 43 H 0.41 1.60 9.10 45.56 0.41 2.02 16 44 H 0.10 0.69 7.90 -51.93 -0.41 0.28 16 45 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.09 1.75 6.27 -52.49 -0.33 1.43 16 47 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -31.89 380.52 -9.78 -41.67 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.86 Total: 10.84 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.61 Total: -21.49 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: -0.59 Total: -25.63 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -1.42 Total: -24.69 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.89 -9.78 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.544 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds