Wall clock time and date at job start Wed Apr 1 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48507 * 109.47254 * 240.00318 * 3 2 1 5 5 H 1.48496 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47046 * 120.00413 * 3 2 1 7 7 C 1.39895 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 199.40261 * 7 2 1 9 9 C 1.41217 * 119.99769 * 19.39947 * 7 2 1 10 10 C 1.40832 * 120.18067 * 24.97465 * 9 7 2 11 11 C 1.36427 * 119.81123 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18820 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.82317 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00329 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47330 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.46948 * 54.99472 * 15 14 13 17 17 O 1.42903 * 109.46996 * 295.00298 * 15 14 13 18 18 C 1.52995 * 109.47334 * 174.99975 * 15 14 13 19 19 N 1.46904 * 109.47198 * 187.06698 * 18 15 14 20 20 C 1.49607 * 110.99835 * 291.64395 * 19 18 15 21 21 C 1.56738 * 99.23695 * 242.11034 * 20 19 18 22 22 C 1.55993 * 106.43400 * 42.22745 * 21 20 19 23 23 C 1.50234 * 110.99891 * 180.18011 * 19 18 15 24 24 C 1.50699 * 117.57508 * 296.57272 * 23 19 18 25 25 O 1.20824 * 120.00138 * 215.48540 * 24 23 19 26 26 O 1.34231 * 120.00272 * 35.48587 * 24 23 19 27 27 C 1.54886 * 103.48640 * 161.77195 * 23 19 18 28 28 C 1.39319 * 120.36216 * 0.25713 * 12 11 10 29 29 C 1.36442 * 120.18238 * 359.48620 * 28 12 11 30 30 H 0.96996 * 120.00471 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.09009 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91263 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47352 * 60.00336 * 14 13 12 34 34 H 1.09002 * 109.47330 * 300.00144 * 14 13 12 35 35 H 0.96700 * 113.99997 * 304.37427 * 17 15 14 36 36 H 1.09000 * 109.47218 * 307.06467 * 18 15 14 37 37 H 1.08998 * 109.47045 * 67.06814 * 18 15 14 38 38 H 1.09001 * 111.44354 * 359.61937 * 20 19 18 39 39 H 1.09001 * 111.44465 * 124.60238 * 20 19 18 40 40 H 1.08996 * 118.44356 * 181.30893 * 21 20 19 41 41 H 1.08998 * 114.52230 * 54.77123 * 22 21 20 42 42 H 1.08997 * 114.52439 * 188.44908 * 22 21 20 43 43 H 0.96699 * 117.00516 * 179.97438 * 26 24 23 44 44 H 1.08995 * 114.44144 * 181.54935 * 27 23 19 45 45 H 1.08992 * 114.47851 * 48.13434 * 27 23 19 46 46 H 1.08000 * 119.90672 * 179.72040 * 28 12 11 47 47 H 1.07996 * 120.08939 * 180.25566 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0422 -1.2381 0.3101 9 6 1.3623 -2.3996 -0.4073 10 6 0.2577 -2.3421 -1.2790 11 6 -0.3610 -3.4945 -1.6667 12 6 0.0972 -4.7258 -1.2033 13 8 -0.5239 -5.8672 -1.5932 14 6 -0.0045 -7.0960 -1.0812 15 6 -0.8271 -8.2646 -1.6276 16 1 -0.8434 -8.2196 -2.7166 17 8 -2.1632 -8.1814 -1.1275 18 6 -0.1967 -9.5851 -1.1809 19 7 -0.8830 -10.7035 -1.8412 20 6 -2.2841 -10.8460 -1.3363 21 6 -2.1827 -12.2812 -0.7144 22 6 -0.8150 -12.3426 0.0332 23 6 -0.2927 -12.0201 -1.4226 24 6 1.1462 -12.2857 -1.7834 25 8 1.4984 -13.4028 -2.0796 26 8 2.0365 -11.2812 -1.7758 27 6 -1.3883 -13.0455 -1.8062 28 6 1.1863 -4.7911 -0.3369 29 6 1.8196 -3.6483 0.0564 30 1 -0.4850 0.8400 0.0004 31 1 -0.0990 -1.3883 -1.6389 32 1 -1.2085 -3.4523 -2.3349 33 1 -0.0611 -7.0890 0.0073 34 1 1.0348 -7.2080 -1.3902 35 1 -2.2208 -8.1479 -0.1628 36 1 0.8586 -9.5945 -1.4537 37 1 -0.2935 -9.6866 -0.1000 38 1 -2.5121 -10.0978 -0.5771 39 1 -3.0067 -10.8151 -2.1518 40 1 -3.0743 -12.7150 -0.2618 41 1 -0.6664 -11.5533 0.7701 42 1 -0.5415 -13.3335 0.3955 43 1 2.9477 -11.5003 -2.0140 44 1 -1.1493 -14.0777 -1.5504 45 1 -1.7826 -12.9288 -2.8156 46 1 1.5326 -5.7493 0.0215 47 1 2.6662 -3.7010 0.7247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:07 Heat of formation + Delta-G solvation = -109.018801 kcal Electronic energy + Delta-G solvation = -30083.521366 eV Core-core repulsion = 25811.821330 eV Total energy + Delta-G solvation = -4271.700036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.73492 -40.72763 -40.52025 -38.84904 -37.65271 -37.20295 -35.17807 -34.08474 -31.93994 -31.13113 -30.64143 -29.56847 -27.24268 -26.54931 -25.91614 -24.54989 -23.24905 -22.47465 -22.21756 -21.38110 -20.43692 -19.25390 -19.11162 -18.75291 -18.15163 -17.59906 -17.15810 -16.99827 -16.91165 -16.35942 -15.85529 -15.72401 -15.66453 -15.55631 -15.11196 -14.93132 -14.49917 -14.12985 -14.04328 -13.94053 -13.75262 -13.55565 -13.12241 -12.99292 -12.94574 -12.78948 -12.70835 -12.64357 -12.54480 -12.42753 -12.36162 -11.96474 -11.85904 -11.71082 -11.57745 -11.48088 -11.29876 -11.16474 -10.86777 -10.73954 -9.65410 -9.55580 -8.92165 -8.59912 -6.21603 0.94683 0.96415 1.03234 1.40063 1.50681 1.55350 1.96500 2.22901 2.29530 2.72669 2.86916 3.03940 3.27619 3.30091 3.43529 3.69437 3.70580 3.95619 3.99267 4.02950 4.18917 4.27939 4.30440 4.36590 4.41067 4.48101 4.63763 4.69318 4.77711 4.82499 4.87336 4.88383 4.95141 4.99267 5.03962 5.08548 5.14913 5.22490 5.28485 5.40786 5.51679 5.58791 5.65044 5.84888 5.89192 6.06337 6.26766 6.56802 6.76429 6.82664 6.89507 6.95495 7.11070 8.36884 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.001895 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.663397 B =14773.616846 C =15468.707195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.056 3.944 10 C -0.154 4.154 11 C -0.134 4.134 12 C 0.001 3.999 13 O -0.330 6.330 14 C 0.032 3.968 15 C 0.130 3.870 16 H 0.095 0.905 17 O -0.559 6.559 18 C 0.014 3.986 19 N -0.479 5.479 20 C 0.037 3.963 21 C -0.126 4.126 22 C -0.129 4.129 23 C 0.021 3.979 24 C 0.527 3.473 25 O -0.540 6.540 26 O -0.506 6.506 27 C -0.109 4.109 28 C -0.163 4.163 29 C -0.208 4.208 30 H 0.288 0.712 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.384 0.616 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.427 0.573 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.130 0.870 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -23.506 1.100 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.054 3.946 10 C -0.173 4.173 11 C -0.152 4.152 12 C -0.043 4.043 13 O -0.246 6.246 14 C -0.044 4.044 15 C 0.070 3.930 16 H 0.113 0.887 17 O -0.366 6.366 18 C -0.114 4.114 19 N -0.204 5.204 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.070 4.070 24 C 0.369 3.631 25 O -0.430 6.430 26 O -0.320 6.320 27 C -0.146 4.146 28 C -0.182 4.182 29 C -0.228 4.228 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.289 0.711 44 H 0.124 0.876 45 H 0.094 0.906 46 H 0.148 0.852 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.186 -23.457 -0.243 23.674 hybrid contribution 1.404 0.705 1.202 1.978 sum -1.782 -22.753 0.959 22.842 Atomic orbital electron populations 1.69889 1.08996 1.30589 1.36163 1.26733 0.95445 1.04478 0.91345 0.85279 0.78782 0.75783 0.80013 1.18621 1.19385 1.18315 1.19673 0.98974 0.92638 1.41802 0.90532 1.17941 0.92537 0.93377 0.90781 1.20838 0.99759 0.96335 1.00382 1.19995 1.01358 0.90702 1.03191 1.18659 0.97085 0.85516 1.03002 1.85875 1.56346 1.12716 1.69678 1.23445 0.98699 0.83297 0.98959 1.21669 0.81647 0.90007 0.99639 0.88659 1.86649 1.26343 1.96167 1.27427 1.22938 1.00470 0.90081 0.97934 1.66765 1.03451 0.98978 1.51220 1.24068 0.89463 0.95499 0.99919 1.24701 0.97337 0.96145 0.96214 1.24831 0.95621 1.03887 0.92387 1.24429 0.87506 0.94546 1.00520 1.22286 0.87494 0.81668 0.71604 1.90714 1.80645 1.25545 1.46083 1.84533 1.25211 1.41000 1.81226 1.23787 0.93057 0.97358 1.00436 1.20698 0.97572 0.98691 1.01189 1.20809 1.04021 0.92550 1.05431 0.90192 0.87583 0.87594 0.91503 0.91344 0.76681 0.87792 0.92054 0.88791 0.89137 0.84097 0.89709 0.86740 0.71071 0.87627 0.90625 0.85243 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.91 11.08 21.82 0.24 -43.67 16 2 C 0.03 1.74 5.09 85.24 0.43 2.17 16 3 Si 0.98 38.34 29.60 68.60 2.03 40.37 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -27.08 9.03 23.40 0.21 -26.87 16 8 H 0.08 3.96 7.92 -2.91 -0.02 3.93 16 9 C 0.06 3.03 5.56 -21.28 -0.12 2.91 16 10 C -0.15 -8.27 8.64 22.48 0.19 -8.08 16 11 C -0.13 -6.57 9.92 22.11 0.22 -6.35 16 12 C 0.00 0.06 6.71 22.79 0.15 0.21 16 13 O -0.33 -12.79 10.09 -85.26 -0.86 -13.65 16 14 C 0.03 0.88 4.33 71.98 0.31 1.19 16 15 C 0.13 2.91 3.41 30.59 0.10 3.01 16 16 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 17 O -0.56 -12.31 10.60 -144.34 -1.53 -13.84 16 18 C 0.01 0.25 4.31 86.30 0.37 0.62 16 19 N -0.48 -8.41 5.60 -835.72 -4.68 -13.08 16 20 C 0.04 0.53 5.92 87.08 0.52 1.04 16 21 C -0.13 -1.26 6.32 -11.58 -0.07 -1.33 16 22 C -0.13 -1.38 7.54 31.07 0.23 -1.15 16 23 C 0.02 0.34 1.68 0.68 0.00 0.34 16 24 C 0.53 9.85 8.16 71.24 0.58 10.43 16 25 O -0.54 -12.90 17.55 21.97 0.39 -12.51 16 26 O -0.51 -7.33 10.86 -51.42 -0.56 -7.89 16 27 C -0.11 -1.48 7.06 29.64 0.21 -1.27 16 28 C -0.16 -6.98 8.96 22.11 0.20 -6.78 16 29 C -0.21 -10.09 9.74 22.48 0.22 -9.87 16 30 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 31 H 0.11 5.94 6.25 -2.91 -0.02 5.92 16 32 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.07 1.64 7.64 -2.39 -0.02 1.62 16 34 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 35 H 0.38 5.85 8.62 -74.06 -0.64 5.21 16 36 H 0.10 1.87 5.71 -2.39 -0.01 1.86 16 37 H 0.06 0.86 6.94 -2.39 -0.02 0.85 16 38 H 0.09 1.24 5.42 -2.39 -0.01 1.23 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.84 7.17 -2.39 -0.02 0.83 16 42 H 0.11 1.02 7.90 -2.39 -0.02 1.00 16 43 H 0.43 2.74 9.10 -74.06 -0.67 2.07 16 44 H 0.11 1.29 7.90 -2.39 -0.02 1.27 16 45 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 46 H 0.13 4.49 6.27 -2.91 -0.02 4.47 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -69.76 380.52 -1.48 -71.24 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.28 Total: 32.80 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.77 Total: -39.78 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -4.43 Total: -56.75 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -2.56 Total: -47.89 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -69.76 -1.48 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.780 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds