Wall clock time and date at job start Wed Apr 1 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86805 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46722 * 275.38797 * 3 2 1 5 5 H 1.48501 * 109.47136 * 35.38903 * 3 2 1 6 6 H 1.48503 * 109.47111 * 155.38579 * 3 2 1 7 7 C 1.39950 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00100 * 342.09119 * 7 2 1 9 9 C 1.41401 * 119.99504 * 162.08641 * 7 2 1 10 10 C 1.40728 * 120.24610 * 329.77900 * 9 7 2 11 11 C 1.37600 * 119.74629 * 179.72514 * 10 9 7 12 12 C 1.38659 * 120.24526 * 0.25309 * 11 10 9 13 13 C 1.38617 * 120.50129 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.24891 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.12947 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47105 * 265.00368 * 15 14 13 17 17 O 1.21279 * 120.00227 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99810 * 179.97438 * 16 15 14 19 19 C 1.46919 * 120.63124 * 359.72211 * 18 16 15 20 20 C 1.53626 * 108.54413 * 126.36498 * 19 18 16 21 21 C 1.53043 * 109.24144 * 54.85507 * 20 19 18 22 22 C 1.53006 * 109.44712 * 178.49452 * 21 20 19 23 23 H 1.08995 * 109.46686 * 60.06476 * 22 21 20 24 24 O 1.42903 * 109.46588 * 180.02562 * 22 21 20 25 25 C 1.50698 * 109.47423 * 300.05993 * 22 21 20 26 26 O 1.20824 * 120.00414 * 245.00000 * 25 22 21 27 27 O 1.34235 * 119.99452 * 65.00275 * 25 22 21 28 28 C 1.53032 * 109.53971 * 298.50984 * 21 20 19 29 29 C 1.46934 * 120.62847 * 179.97438 * 18 16 15 30 30 H 0.97003 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.12968 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.87734 * 180.23091 * 11 10 9 33 33 H 1.07995 * 119.74684 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.87368 * 180.02562 * 13 12 11 35 35 H 1.09005 * 109.46973 * 24.99983 * 15 14 13 36 36 H 1.08996 * 109.47624 * 144.99827 * 15 14 13 37 37 H 1.09004 * 109.58826 * 246.19610 * 19 18 16 38 38 H 1.09001 * 109.58685 * 6.62444 * 19 18 16 39 39 H 1.09001 * 109.63677 * 294.86425 * 20 19 18 40 40 H 1.09001 * 109.46085 * 174.73900 * 20 19 18 41 41 H 1.09000 * 109.45864 * 58.53649 * 21 20 19 42 42 H 0.96698 * 113.99940 * 60.00375 * 24 22 21 43 43 H 0.96701 * 116.99209 * 179.97438 * 27 25 22 44 44 H 1.08994 * 109.49920 * 301.41924 * 28 21 20 45 45 H 1.08997 * 109.52692 * 181.32711 * 28 21 20 46 46 H 1.09001 * 109.58465 * 353.37760 * 29 18 16 47 47 H 1.08997 * 109.58455 * 113.66070 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3759 2.1121 -1.3939 5 1 1.5013 2.6172 0.8108 6 1 3.5921 1.4100 0.5831 7 6 2.0079 -1.2120 0.0005 8 1 1.5072 -2.1245 0.2885 9 6 3.3705 -1.2418 -0.3761 10 6 3.8685 -0.3134 -1.3091 11 6 5.1975 -0.3481 -1.6641 12 6 6.0438 -1.2965 -1.1100 13 6 5.5629 -2.2194 -0.1944 14 6 4.2372 -2.2033 0.1752 15 6 3.7171 -3.2084 1.1704 16 6 3.1250 -4.3831 0.4352 17 8 3.1249 -4.4021 -0.7774 18 7 2.5956 -5.4126 1.1254 19 6 2.5939 -5.4068 2.5946 20 6 1.1557 -5.6389 3.0824 21 6 0.6133 -6.9269 2.4587 22 6 -0.8057 -7.1826 2.9708 23 1 -1.4481 -6.3469 2.6934 24 8 -1.3124 -8.3855 2.3891 25 6 -0.7810 -7.3209 4.4712 26 8 -1.0722 -8.3747 4.9857 27 8 -0.4355 -6.2733 5.2361 28 6 0.5879 -6.7865 0.9350 29 6 2.0141 -6.5646 0.4228 30 1 -0.4850 0.8401 -0.0004 31 1 3.2112 0.4266 -1.7413 32 1 5.5827 0.3657 -2.3770 33 1 7.0854 -1.3166 -1.3946 34 1 6.2312 -2.9534 0.2311 35 1 4.5363 -3.5509 1.8027 36 1 2.9502 -2.7432 1.7896 37 1 3.2408 -6.2025 2.9640 38 1 2.9530 -4.4434 2.9566 39 1 0.5281 -4.7986 2.7856 40 1 1.1510 -5.7306 4.1685 41 1 1.2554 -7.7630 2.7358 42 1 -0.7889 -9.1723 2.5941 43 1 -0.4346 -6.4102 6.1934 44 1 -0.0342 -5.9354 0.6584 45 1 0.1795 -7.6949 0.4922 46 1 1.9907 -6.3654 -0.6486 47 1 2.6161 -7.4524 0.6163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:07 Heat of formation + Delta-G solvation = -163.920389 kcal Electronic energy + Delta-G solvation = -31208.347880 eV Core-core repulsion = 26934.267133 eV Total energy + Delta-G solvation = -4274.080747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.04728 -39.80480 -38.24684 -37.51423 -36.77161 -35.94184 -33.56009 -33.08992 -32.07157 -30.92732 -30.28149 -28.51918 -26.99783 -24.99347 -24.21676 -23.28443 -21.89392 -21.37339 -20.97050 -19.90647 -18.75378 -18.46342 -17.93032 -17.31538 -16.88120 -16.29437 -16.01830 -15.85409 -15.37478 -15.15684 -14.76293 -14.42947 -14.16144 -14.04721 -13.76658 -13.64986 -13.52805 -12.98917 -12.85075 -12.65597 -12.53244 -12.48205 -12.10625 -11.96874 -11.91443 -11.83284 -11.38086 -11.29281 -11.13977 -11.03532 -10.83774 -10.78015 -10.69899 -10.62871 -10.25882 -10.21827 -9.68445 -9.52603 -9.14756 -9.10019 -8.35544 -7.56622 -7.46825 -6.91030 -4.44763 1.75518 2.57920 2.58861 2.74649 3.14330 3.20602 3.28732 3.34177 3.39469 3.77459 4.01009 4.22854 4.45590 4.53882 4.70474 4.76544 4.92546 5.08119 5.16973 5.25135 5.26015 5.42290 5.57234 5.58719 5.63851 5.78606 5.81880 5.86249 5.93526 6.06179 6.09881 6.10673 6.13125 6.21535 6.24284 6.29781 6.60342 6.75008 6.83159 6.98263 7.01372 7.23745 7.45579 7.50072 7.69100 7.75942 7.82269 7.94314 8.17650 8.38958 8.71524 8.81683 8.85670 10.11102 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.003076 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.710375 B = 9099.218132 C =10129.441118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.070 4.070 14 C -0.166 4.166 15 C -0.073 4.073 16 C 0.520 3.480 17 O -0.520 6.520 18 N -0.626 5.626 19 C 0.113 3.887 20 C -0.141 4.141 21 C -0.109 4.109 22 C 0.123 3.877 23 H 0.141 0.859 24 O -0.528 6.528 25 C 0.454 3.546 26 O -0.514 6.514 27 O -0.504 6.504 28 C -0.123 4.123 29 C 0.114 3.886 30 H 0.283 0.717 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.384 0.616 43 H 0.407 0.593 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -12.068 10.493 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.252 4.252 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.088 4.088 14 C -0.168 4.168 15 C -0.112 4.112 16 C 0.310 3.690 17 O -0.394 6.394 18 N -0.363 5.363 19 C -0.011 4.011 20 C -0.179 4.179 21 C -0.128 4.128 22 C 0.062 3.938 23 H 0.158 0.842 24 O -0.334 6.334 25 C 0.295 3.705 26 O -0.402 6.402 27 O -0.316 6.316 28 C -0.161 4.161 29 C -0.009 4.009 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.233 0.767 43 H 0.267 0.733 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.103 -11.802 9.312 15.033 hybrid contribution 0.489 0.234 0.918 1.066 sum 0.386 -11.568 10.229 15.447 Atomic orbital electron populations 1.69705 1.08046 1.30048 1.35638 1.26138 0.94654 1.01606 0.90889 0.86363 0.81322 0.79976 0.78823 1.19786 1.22010 1.16704 1.19399 0.92962 0.95685 1.39154 0.89331 1.17481 0.92660 0.90136 0.89068 1.21000 0.95471 1.04723 1.04047 1.20598 0.93906 0.97281 0.98101 1.20328 0.98105 1.01790 1.05920 1.20425 0.94574 0.96916 0.96898 1.19079 0.93041 1.01403 1.03262 1.20321 1.00476 0.92626 0.97806 1.21122 0.77029 0.82701 0.88193 1.90679 1.56016 1.78580 1.14113 1.48233 1.61350 1.20376 1.06296 1.21728 0.96167 1.02950 0.80240 1.22259 0.97071 0.97085 1.01506 1.21769 0.93686 0.99821 0.97562 1.21702 0.98182 0.90387 0.83562 0.84200 1.86690 1.56377 1.17222 1.73066 1.24680 0.72135 0.81320 0.92323 1.90734 1.44766 1.29487 1.75260 1.84668 1.80328 1.42015 1.24596 1.21895 0.97850 1.03389 0.93015 1.21434 0.92382 0.88124 0.98959 0.90627 0.88354 0.89044 0.89044 0.89163 0.90482 0.88163 0.91981 0.88954 0.90131 0.88930 0.90357 0.76709 0.73314 0.90578 0.90097 0.88782 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.37 13.93 55.55 0.77 -20.60 16 2 C 0.09 2.22 5.41 -17.34 -0.09 2.13 16 3 Si 0.91 20.73 24.52 -169.99 -4.17 16.56 16 4 H -0.27 -6.14 6.71 56.52 0.38 -5.76 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 7 C -0.44 -11.77 8.56 -37.74 -0.32 -12.10 16 8 H 0.09 2.47 7.00 -52.49 -0.37 2.10 16 9 C 0.11 2.79 5.10 -106.82 -0.54 2.24 16 10 C -0.23 -5.82 7.17 -38.87 -0.28 -6.10 16 11 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 12 C -0.24 -5.22 10.05 -39.29 -0.39 -5.61 16 13 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 14 C -0.17 -3.79 4.43 -103.91 -0.46 -4.25 16 15 C -0.07 -1.36 3.54 -29.04 -0.10 -1.46 16 16 C 0.52 9.97 7.33 -10.99 -0.08 9.89 16 17 O -0.52 -12.36 15.45 5.56 0.09 -12.28 16 18 N -0.63 -9.02 2.97 -172.52 -0.51 -9.53 16 19 C 0.11 1.19 6.37 -3.49 -0.02 1.17 16 20 C -0.14 -1.32 4.90 -26.38 -0.13 -1.45 16 21 C -0.11 -0.93 1.91 -90.58 -0.17 -1.11 16 22 C 0.12 1.07 3.09 -27.88 -0.09 0.98 16 23 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 24 O -0.53 -4.87 12.30 -55.12 -0.68 -5.55 16 25 C 0.45 4.09 7.50 36.00 0.27 4.36 16 26 O -0.51 -6.11 17.08 -25.46 -0.43 -6.55 16 27 O -0.50 -3.41 10.62 -39.27 -0.42 -3.82 16 28 C -0.12 -1.29 5.23 -26.63 -0.14 -1.43 16 29 C 0.11 1.45 6.43 -3.72 -0.02 1.42 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.10 2.45 4.77 -52.49 -0.25 2.20 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 36 H 0.10 1.86 6.68 -51.93 -0.35 1.51 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.72 5.44 -51.93 -0.28 0.44 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.38 2.48 8.79 45.56 0.40 2.88 16 43 H 0.41 1.18 9.10 45.56 0.41 1.59 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 0.75 7.64 -51.93 -0.40 0.35 16 46 H 0.09 1.44 7.01 -51.93 -0.36 1.08 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -34.32 375.77 -7.93 -42.25 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.88 Total: 9.26 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.36 Total: -15.40 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 0.26 Total: -30.13 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.44 Total: -28.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.32 -7.93 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.668 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds