Wall clock time and date at job start Wed Apr 1 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38340 * 120.01170 * 359.72565 * 3 2 1 5 5 C 1.39328 * 119.88102 * 179.70228 * 4 3 2 6 6 C 1.48431 * 120.04752 * 180.30319 * 5 4 3 7 7 N 1.34052 * 126.67483 * 359.97438 * 6 5 4 8 8 N 1.28990 * 107.26985 * 179.83904 * 7 6 5 9 9 N 1.28738 * 108.94147 * 0.43771 * 8 7 6 10 10 H 0.96997 * 125.33573 * 179.74044 * 9 8 7 11 11 N 1.28868 * 109.32356 * 359.72399 * 9 8 7 12 12 C 1.39325 * 119.90814 * 0.59267 * 5 4 3 13 13 C 1.38003 * 120.03242 * 359.68615 * 12 5 4 14 14 C 1.38662 * 120.12013 * 0.02562 * 13 12 5 15 15 O 1.35960 * 119.96372 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99460 * 0.02562 * 15 14 13 17 17 C 1.53002 * 109.46907 * 179.97438 * 16 15 14 18 18 C 1.52992 * 109.46817 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.47092 * 179.97438 * 18 17 16 20 20 O 1.21295 * 119.99860 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00107 * 179.97438 * 19 18 17 22 22 C 1.37104 * 120.00063 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99353 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00058 * 180.02562 * 22 21 19 25 25 N 1.31403 * 119.99739 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99640 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47182 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47228 * 119.99858 * 26 24 22 29 29 H 1.48506 * 109.46875 * 239.99565 * 26 24 22 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 33 33 H 1.07998 * 120.06486 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.98663 * 179.70155 * 12 5 4 35 35 H 1.08002 * 119.94844 * 180.02562 * 13 12 5 36 36 H 1.08999 * 109.47063 * 299.99799 * 16 15 14 37 37 H 1.08996 * 109.46786 * 60.00046 * 16 15 14 38 38 H 1.09004 * 109.46731 * 299.99983 * 17 16 15 39 39 H 1.08993 * 109.47010 * 60.00002 * 17 16 15 40 40 H 1.08997 * 109.47672 * 299.99589 * 18 17 16 41 41 H 1.09000 * 109.47594 * 60.00440 * 18 17 16 42 42 H 0.97003 * 120.00149 * 0.02562 * 21 19 18 43 43 H 0.97006 * 119.99751 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3721 -0.0057 5 6 1.9288 3.6120 0.0006 6 6 1.1243 4.8594 0.0012 7 7 -0.2132 4.9495 -0.0042 8 7 -0.5125 6.2042 0.0021 9 7 0.5750 6.8932 0.0019 10 1 0.6254 7.8619 0.0024 11 7 1.5861 6.0942 0.0013 12 6 3.3204 3.6795 0.0001 13 6 4.0681 2.5196 0.0000 14 6 3.4371 1.2849 -0.0002 15 8 4.1769 0.1442 -0.0009 16 6 5.5982 0.2928 -0.0007 17 6 6.2554 -1.0889 -0.0009 18 6 7.7770 -0.9297 -0.0001 19 6 8.4244 -2.2906 0.0004 20 8 7.7364 -3.2895 -0.0003 21 7 9.7679 -2.3978 0.0006 22 6 10.3569 -3.6358 0.0005 23 1 9.7441 -4.5252 -0.0001 24 6 11.7420 -3.7463 0.0013 25 7 12.4873 -2.6641 0.0016 26 14 12.5444 -5.4332 0.0005 27 1 11.4926 -6.4816 -0.0004 28 1 13.3899 -5.5786 -1.2117 29 1 13.3885 -5.5804 1.2134 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2148 2.3171 -0.0098 34 1 3.8142 4.6400 0.0001 35 1 5.1468 2.5735 0.0001 36 1 5.9061 0.8421 -0.8904 37 1 5.9060 0.8411 0.8896 38 1 5.9473 -1.6378 0.8891 39 1 5.9475 -1.6375 -0.8909 40 1 8.0855 -0.3807 -0.8897 41 1 8.0846 -0.3813 0.8903 42 1 10.3182 -1.5989 0.0008 43 1 13.4543 -2.7412 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605183680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:05 Heat of formation + Delta-G solvation = 31.371305 kcal Electronic energy + Delta-G solvation = -28215.900123 eV Core-core repulsion = 23879.040267 eV Total energy + Delta-G solvation = -4336.859856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.81672 -40.80003 -38.81562 -38.18548 -37.41711 -34.70490 -34.20452 -33.69554 -33.05657 -31.21395 -30.73002 -30.12522 -27.55265 -27.30123 -25.09884 -24.85181 -24.27866 -22.76165 -21.86706 -21.16689 -19.63004 -19.21515 -18.60429 -17.86869 -17.50922 -17.48979 -16.68476 -16.46743 -15.81363 -15.73799 -15.62697 -15.00936 -14.63366 -14.50173 -14.44064 -14.19216 -13.92447 -13.27395 -13.24651 -13.04708 -12.57015 -12.49709 -12.40768 -12.03488 -11.84135 -11.76305 -11.66161 -11.60385 -11.44697 -11.38453 -11.29932 -11.06337 -10.86565 -10.70328 -10.34120 -10.33876 -10.22181 -9.53241 -9.03648 -8.41650 -8.01557 -7.97867 -6.42680 -3.83417 0.38739 0.82650 1.02214 1.85589 2.02173 2.98598 3.03037 3.16263 3.27087 3.32668 3.34821 3.43605 3.82931 3.90431 4.17894 4.51612 4.67671 4.68530 4.85989 4.89112 4.97606 4.97841 5.02949 5.04421 5.14784 5.24570 5.25292 5.31969 5.32246 5.43659 5.62498 5.70961 5.75869 5.87514 5.95621 6.00312 6.06298 6.24808 6.42654 6.43997 6.61529 6.90564 7.38148 7.55036 7.76731 8.05469 8.59718 9.16993 9.53711 10.04886 10.75052 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.001572 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.256367 B =17804.002125 C =18955.204987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.300 6.300 3 C 0.095 3.905 4 C -0.131 4.131 5 C -0.031 4.031 6 C 0.230 3.770 7 N -0.272 5.272 8 N -0.050 5.050 9 N -0.228 5.228 10 H 0.475 0.525 11 N -0.295 5.295 12 C -0.069 4.069 13 C -0.181 4.181 14 C 0.136 3.864 15 O -0.295 6.295 16 C 0.055 3.945 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.440 3.560 20 O -0.595 6.595 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.393 0.607 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.531 21.121 0.001 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.213 6.213 3 C 0.049 3.951 4 C -0.152 4.152 5 C -0.034 4.034 6 C -0.050 4.050 7 N -0.145 5.145 8 N -0.046 5.046 9 N -0.074 5.074 10 H 0.330 0.670 11 N -0.147 5.147 12 C -0.089 4.089 13 C -0.200 4.200 14 C 0.088 3.912 15 O -0.208 6.208 16 C -0.019 4.019 17 C -0.135 4.135 18 C -0.168 4.168 19 C 0.226 3.774 20 O -0.480 6.480 21 N -0.198 5.198 22 C -0.431 4.431 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.226 0.774 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.317 20.401 -0.003 30.982 hybrid contribution 1.234 0.570 0.002 1.359 sum -22.083 20.971 -0.001 30.454 Atomic orbital electron populations 1.23123 0.78371 1.04260 1.01356 1.86251 1.21117 1.25061 1.88870 1.18037 0.89087 0.85223 1.02726 1.20969 1.00627 0.89839 1.03788 1.16758 0.91349 0.86726 1.08600 1.23611 0.88714 0.91758 1.00899 1.76072 1.12394 1.07963 1.18111 1.78909 1.12533 0.98418 1.14702 1.47724 1.00936 1.12643 1.46133 0.67036 1.74947 1.16028 1.01329 1.22384 1.20845 0.91573 0.98795 0.97724 1.21068 1.01046 0.90432 1.07431 1.18524 0.88430 0.86589 0.97671 1.86235 1.19518 1.27642 1.87356 1.23080 0.77208 1.00285 1.01363 1.21165 0.93284 0.93760 1.05248 1.21359 0.94661 0.97732 1.03019 1.19833 0.83100 0.90096 0.84353 1.90535 1.62717 1.38660 1.56097 1.41908 1.04654 1.09272 1.63997 1.19791 0.89989 0.85786 1.47491 0.87831 1.25269 0.96274 0.99121 0.97269 1.69618 1.05916 1.28110 1.50612 0.85799 0.79055 0.81788 0.77704 1.19190 1.20744 1.20748 0.87965 0.92559 0.92550 0.83542 0.84485 0.83619 0.91739 0.91746 0.90162 0.90159 0.90215 0.90221 0.77375 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.63 10.27 -34.37 -0.35 -3.99 16 3 C 0.10 1.12 6.69 -39.17 -0.26 0.85 16 4 C -0.13 -1.32 8.69 -39.14 -0.34 -1.66 16 5 C -0.03 -0.30 5.88 -104.89 -0.62 -0.92 16 6 C 0.23 2.27 7.93 -156.30 -1.24 1.04 16 7 N -0.27 -2.80 12.23 32.15 0.39 -2.41 16 8 N -0.05 -0.42 13.47 60.35 0.81 0.39 16 9 N -0.23 -1.31 7.90 60.35 0.48 -0.83 16 10 H 0.48 0.40 8.96 -340.37 -3.05 -2.65 16 11 N -0.30 -2.44 12.07 32.17 0.39 -2.05 16 12 C -0.07 -0.63 9.69 -39.26 -0.38 -1.01 16 13 C -0.18 -1.76 9.02 -39.51 -0.36 -2.12 16 14 C 0.14 1.65 6.70 -39.05 -0.26 1.39 16 15 O -0.30 -4.12 9.91 -34.27 -0.34 -4.46 16 16 C 0.06 0.67 4.74 37.16 0.18 0.84 16 17 C -0.10 -1.50 4.87 -26.73 -0.13 -1.63 16 18 C -0.13 -2.08 5.70 -27.88 -0.16 -2.24 16 19 C 0.44 10.25 7.78 -10.99 -0.09 10.17 16 20 O -0.59 -16.14 15.56 5.54 0.09 -16.06 16 21 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 26 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 33 H 0.15 1.27 6.11 -52.49 -0.32 0.95 16 34 H 0.14 1.02 7.87 -52.49 -0.41 0.61 16 35 H 0.15 1.14 6.28 -52.49 -0.33 0.81 16 36 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 37 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 38 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 39 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -35.43 377.16 -7.76 -43.19 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.65 Total: 4.60 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.90 Total: -2.15 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 2.74 Total: -42.80 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.61 Total: -24.50 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.43 -7.76 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605183680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.566 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds