Wall clock time and date at job start Wed Apr 1 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48504 * 109.46994 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47257 * 29.99714 * 3 2 1 6 6 H 1.48498 * 109.47236 * 150.00140 * 3 2 1 7 7 C 1.38656 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99273 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00297 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99713 * 185.06031 * 9 7 2 11 11 C 1.38894 * 120.07232 * 354.48446 * 10 9 7 12 12 C 1.38081 * 119.93278 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06919 * 359.74788 * 12 11 10 14 14 C 1.38282 * 120.13621 * 0.50947 * 13 12 11 15 15 C 1.50698 * 119.96775 * 179.76892 * 14 13 12 16 16 C 1.50701 * 109.47124 * 269.72620 * 15 14 13 17 17 O 1.21284 * 119.99788 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00187 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00120 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47182 * 179.97438 * 19 18 16 21 21 H 1.09009 * 109.47090 * 55.00132 * 20 19 18 22 22 C 1.50704 * 109.47362 * 295.00309 * 20 19 18 23 23 O 1.20824 * 119.99902 * 240.00023 * 22 20 19 24 24 O 1.34228 * 119.99967 * 59.99883 * 22 20 19 25 25 C 1.52998 * 109.47525 * 175.00035 * 20 19 18 26 26 C 1.53786 * 113.61477 * 300.00666 * 25 20 19 27 27 C 1.53780 * 87.07934 * 220.01614 * 26 25 20 28 28 C 1.53780 * 87.17570 * 25.38689 * 27 26 25 29 29 C 1.38127 * 120.06721 * 359.48841 * 14 13 12 30 30 H 0.96999 * 119.99756 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.03403 * 359.96032 * 11 10 9 32 32 H 1.08003 * 119.96264 * 179.97438 * 12 11 10 33 33 H 1.07990 * 119.93196 * 180.27814 * 13 12 11 34 34 H 1.09003 * 109.47050 * 149.72029 * 15 14 13 35 35 H 1.09001 * 109.46622 * 29.72090 * 15 14 13 36 36 H 0.97004 * 119.99908 * 0.02562 * 18 16 15 37 37 H 1.08998 * 109.46767 * 60.00319 * 19 18 16 38 38 H 1.09001 * 109.47414 * 299.99784 * 19 18 16 39 39 H 0.96696 * 117.00103 * 180.02562 * 24 22 20 40 40 H 1.09005 * 112.84752 * 71.19191 * 25 20 19 41 41 H 1.08997 * 113.61795 * 105.46257 * 26 25 20 42 42 H 1.08998 * 113.61071 * 334.56023 * 26 25 20 43 43 H 1.08994 * 113.61977 * 139.98275 * 27 26 25 44 44 H 1.09004 * 113.60841 * 270.79809 * 27 26 25 45 45 H 1.08995 * 113.61497 * 89.16188 * 28 27 26 46 46 H 1.09002 * 113.61630 * 220.06472 * 28 27 26 47 47 H 1.07995 * 120.03390 * 180.23404 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5046 0.1078 11 6 3.4573 -3.4394 0.0958 12 6 4.2024 -4.5968 0.2056 13 6 3.5685 -5.8197 0.3326 14 6 2.1874 -5.8884 0.3395 15 6 1.5008 -7.2232 0.4729 16 6 1.2659 -7.8063 -0.8967 17 8 1.6206 -7.1976 -1.8839 18 7 0.6616 -9.0042 -1.0246 19 6 0.4327 -9.5707 -2.3560 20 6 -0.2632 -10.9266 -2.2205 21 1 -1.1753 -10.8100 -1.6351 22 6 0.6581 -11.8970 -1.5272 23 8 0.9990 -12.9118 -2.0875 24 8 1.0999 -11.6340 -0.2873 25 6 -0.6142 -11.4609 -3.6106 26 6 -1.5548 -10.5396 -4.4052 27 6 -2.2680 -11.8140 -4.8869 28 6 -1.7563 -12.4932 -3.6057 29 6 1.4366 -4.7342 0.2301 30 1 -0.4850 0.8401 -0.0004 31 1 3.9529 -2.4845 0.0005 32 1 5.2812 -4.5467 0.1959 33 1 4.1534 -6.7229 0.4229 34 1 0.5453 -7.0911 0.9805 35 1 2.1298 -7.8989 1.0525 36 1 0.3775 -9.4908 -0.2350 37 1 1.3880 -9.7022 -2.8640 38 1 -0.1969 -8.8951 -2.9351 39 1 1.6891 -12.2859 0.1162 40 1 0.2619 -11.7815 -4.1744 41 1 -1.0560 -9.9900 -5.2035 42 1 -2.1765 -9.9028 -3.7759 43 1 -3.3530 -11.7186 -4.9271 44 1 -1.8456 -12.2316 -5.8010 45 1 -2.4331 -12.3916 -2.7574 46 1 -1.4198 -13.5186 -3.7594 47 1 0.3580 -4.7881 0.2394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605586359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:41 Heat of formation + Delta-G solvation = -145.029678 kcal Electronic energy + Delta-G solvation = -29487.408229 eV Core-core repulsion = 25214.146645 eV Total energy + Delta-G solvation = -4273.261584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79555 -41.00337 -40.27861 -39.56366 -38.19076 -37.07526 -36.11824 -34.32644 -33.56718 -32.35952 -30.84370 -28.68296 -27.30150 -26.77775 -25.79722 -25.08715 -23.25998 -22.73593 -21.73622 -21.43769 -20.35594 -19.50134 -19.02707 -18.75605 -17.97266 -17.86710 -17.26248 -16.81228 -16.57617 -16.44780 -16.08903 -16.04347 -15.88948 -15.52960 -15.45517 -14.98386 -14.66291 -14.58709 -14.29448 -13.96157 -13.72858 -13.61044 -13.53806 -13.29219 -12.95601 -12.81968 -12.73417 -12.55840 -12.45351 -12.40815 -12.36183 -12.19827 -12.09015 -11.71896 -11.50751 -11.24924 -11.18453 -11.14673 -10.89388 -10.77427 -10.08670 -9.60753 -8.95425 -8.45703 -6.13943 0.54854 0.78298 1.16976 1.34759 1.44465 1.52617 1.72202 2.03658 2.18300 2.20974 2.86710 3.19933 3.39430 3.46792 3.58076 3.72842 3.84301 3.90654 3.99701 4.07214 4.13157 4.23128 4.23612 4.34679 4.43430 4.49089 4.60965 4.63205 4.69991 4.76523 4.76945 4.84937 4.89432 4.95235 5.09715 5.11440 5.13731 5.14960 5.30188 5.33608 5.43507 5.57474 5.63602 5.67659 5.75359 5.78200 6.04617 6.26217 6.61085 6.98979 6.99563 7.35106 7.80957 8.77878 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.001971 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.797957 B =14206.119085 C =15340.942658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.248 4.248 12 C -0.075 4.075 13 C -0.181 4.181 14 C -0.025 4.025 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.579 6.579 18 N -0.714 5.714 19 C 0.131 3.869 20 C -0.072 4.072 21 H 0.142 0.858 22 C 0.488 3.512 23 O -0.542 6.542 24 O -0.508 6.508 25 C -0.098 4.098 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.130 4.130 29 C -0.192 4.192 30 H 0.272 0.728 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.421 0.579 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.429 0.571 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -27.720 -0.591 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.267 4.267 12 C -0.093 4.093 13 C -0.200 4.200 14 C -0.026 4.026 15 C -0.130 4.130 16 C 0.303 3.697 17 O -0.458 6.458 18 N -0.369 5.369 19 C 0.007 3.993 20 C -0.092 4.092 21 H 0.159 0.841 22 C 0.332 3.668 23 O -0.432 6.432 24 O -0.322 6.322 25 C -0.117 4.117 26 C -0.174 4.174 27 C -0.177 4.177 28 C -0.167 4.167 29 C -0.211 4.211 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.291 0.709 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.342 -27.131 -1.625 27.213 hybrid contribution 0.543 0.416 0.280 0.739 sum -0.799 -26.715 -1.344 26.761 Atomic orbital electron populations 1.70192 1.07985 1.28725 1.49134 1.26604 0.96906 1.02717 0.95958 0.84580 0.77828 0.74544 0.79191 1.18974 1.19366 1.17639 1.21812 0.92468 0.81537 1.53121 0.88319 1.83934 1.35863 1.12538 1.81758 1.19893 0.91643 0.87989 0.94372 1.21289 0.93197 1.00180 1.12013 1.21128 1.00173 0.91576 0.96438 1.20976 0.93624 0.97962 1.07402 1.19214 0.93697 0.92986 0.96658 1.20699 1.04368 0.93459 0.94468 1.20897 0.76511 0.80763 0.91557 1.90766 1.51995 1.61401 1.41673 1.45856 1.61331 1.20048 1.09666 1.21169 1.00282 0.92414 0.85449 1.21426 0.98560 0.91442 0.97733 0.84088 1.23465 0.78499 0.85219 0.79658 1.90727 1.56799 1.29046 1.66600 1.84408 1.63210 1.54627 1.29939 1.22462 0.98390 0.98188 0.92616 1.23020 0.97866 0.96747 0.99765 1.22792 1.00985 0.96290 0.97641 1.22987 0.96643 0.98028 0.99088 1.20238 0.99374 0.90402 1.11120 0.91870 0.86572 0.83859 0.83578 0.85820 0.83864 0.73996 0.92582 0.90020 0.70859 0.89353 0.91347 0.88783 0.90327 0.90151 0.88797 0.91901 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.94 13.67 21.61 0.30 -57.64 16 2 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 3 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.41 -25.00 9.49 67.92 0.64 -24.35 16 8 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 9 O -0.23 -14.71 9.76 -22.70 -0.22 -14.93 16 10 C 0.11 5.85 6.65 22.58 0.15 6.00 16 11 C -0.25 -11.50 9.17 22.39 0.21 -11.29 16 12 C -0.08 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.18 -5.94 9.70 22.30 0.22 -5.73 16 14 C -0.02 -0.86 4.37 -19.88 -0.09 -0.95 16 15 C -0.09 -2.01 5.83 29.10 0.17 -1.84 16 16 C 0.52 13.18 7.82 87.66 0.69 13.86 16 17 O -0.58 -21.74 16.03 -3.04 -0.05 -21.79 16 18 N -0.71 -11.71 5.06 -463.08 -2.34 -14.05 16 19 C 0.13 2.15 4.94 86.38 0.43 2.57 16 20 C -0.07 -0.81 2.12 -11.54 -0.02 -0.83 16 21 H 0.14 0.91 7.95 -2.38 -0.02 0.89 16 22 C 0.49 6.41 7.62 71.24 0.54 6.95 16 23 O -0.54 -10.78 16.60 21.97 0.36 -10.42 16 24 O -0.51 -3.68 11.42 -51.40 -0.59 -4.26 16 25 C -0.10 -1.22 2.54 -10.21 -0.03 -1.24 16 26 C -0.14 -1.56 6.59 31.12 0.21 -1.36 16 27 C -0.14 -1.44 8.08 31.12 0.25 -1.19 16 28 C -0.13 -1.41 7.62 31.18 0.24 -1.18 16 29 C -0.19 -8.61 9.65 22.39 0.22 -8.39 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 31 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 32 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.15 3.58 8.06 -2.92 -0.02 3.56 16 34 H 0.12 2.22 8.08 -2.39 -0.02 2.21 16 35 H 0.14 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.42 4.18 6.95 -92.70 -0.64 3.54 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.49 7.28 -2.39 -0.02 1.47 16 39 H 0.43 0.15 9.10 -74.06 -0.67 -0.52 16 40 H 0.09 1.39 7.86 -2.38 -0.02 1.38 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 0.77 7.97 -2.39 -0.02 0.75 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -88.09 396.53 3.69 -84.40 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.30 Total: 25.07 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.50 Total: -32.49 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -2.05 Total: -71.70 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.49 Total: -51.40 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -88.09 3.69 -84.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.634 kcal (2) G-P(sol) polarization free energy of solvation -88.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds