Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48507 * 109.47151 * 239.99955 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47302 * 120.00639 * 3 2 1 7 7 C 1.38665 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99719 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00334 * 174.96411 * 9 7 2 11 11 C 1.38899 * 120.06203 * 5.46877 * 10 9 7 12 12 C 1.38081 * 119.92966 * 179.97438 * 11 10 9 13 13 C 1.38329 * 120.06429 * 359.74760 * 12 11 10 14 14 C 1.38279 * 120.13874 * 0.50898 * 13 12 11 15 15 C 1.50706 * 119.96175 * 179.76608 * 14 13 12 16 16 C 1.50697 * 109.46941 * 269.72153 * 15 14 13 17 17 O 1.21278 * 120.00139 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99695 * 180.02562 * 16 15 14 19 19 C 1.46928 * 120.63133 * 355.12264 * 18 16 15 20 20 C 1.53184 * 108.77549 * 126.36929 * 19 18 16 21 21 C 1.53046 * 109.31062 * 54.63611 * 20 19 18 22 22 C 1.53040 * 109.53976 * 298.63432 * 21 20 19 23 23 C 1.46922 * 120.62881 * 175.10523 * 18 16 15 24 24 H 1.08998 * 109.59074 * 113.69947 * 23 18 16 25 25 C 1.52997 * 109.59061 * 353.41290 * 23 18 16 26 26 C 1.50704 * 109.46971 * 76.89625 * 25 23 18 27 27 O 1.20823 * 119.99863 * 0.02562 * 26 25 23 28 28 O 1.34223 * 119.99825 * 180.02562 * 26 25 23 29 29 C 1.38118 * 120.06933 * 359.49368 * 14 13 12 30 30 H 0.97007 * 119.99864 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.04115 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.97066 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.93232 * 180.27672 * 13 12 11 34 34 H 1.09007 * 109.46674 * 149.72371 * 15 14 13 35 35 H 1.09000 * 109.47136 * 29.72783 * 15 14 13 36 36 H 1.09004 * 109.58539 * 6.58516 * 19 18 16 37 37 H 1.09001 * 109.58468 * 246.15914 * 19 18 16 38 38 H 1.08995 * 109.49882 * 174.58633 * 20 19 18 39 39 H 1.09003 * 109.50394 * 294.68873 * 20 19 18 40 40 H 1.08999 * 109.45948 * 58.65612 * 21 20 19 41 41 H 1.09001 * 109.45733 * 178.61245 * 21 20 19 42 42 H 1.09005 * 109.49414 * 301.41532 * 22 21 20 43 43 H 1.08998 * 109.52339 * 181.33175 * 22 21 20 44 44 H 1.08993 * 109.47611 * 196.90174 * 25 23 18 45 45 H 1.09002 * 109.47002 * 316.90448 * 25 23 18 46 46 H 0.96708 * 116.99888 * 180.02562 * 28 26 25 47 47 H 1.07997 * 120.03577 * 180.23538 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1072 11 6 3.4572 -3.4394 -0.0958 12 6 4.2024 -4.5968 -0.2039 13 6 3.5684 -5.8210 -0.3184 14 6 2.1874 -5.8887 -0.3355 15 6 1.5008 -7.2240 -0.4656 16 6 1.2769 -7.5336 -1.9234 17 8 1.6394 -6.7477 -2.7729 18 7 0.6736 -8.6840 -2.2829 19 6 0.3249 -9.6936 -1.2740 20 6 -1.1629 -10.0324 -1.4093 21 6 -1.4564 -10.4563 -2.8503 22 6 -1.1363 -9.2993 -3.7995 23 6 0.3519 -8.9521 -3.6912 24 1 0.9514 -9.7885 -4.0502 25 6 0.6508 -7.7089 -4.5314 26 6 2.1375 -7.5969 -4.7514 27 8 2.8815 -8.4266 -4.2846 28 8 2.6351 -6.5755 -5.4660 29 6 1.4365 -4.7345 -0.2277 30 1 -0.4850 0.8401 0.0004 31 1 3.9528 -2.4845 -0.0015 32 1 5.2812 -4.5468 -0.1955 33 1 4.1533 -6.7254 -0.3984 34 1 0.5412 -7.1909 0.0504 35 1 2.1258 -7.9987 -0.0214 36 1 0.5201 -9.2970 -0.2776 37 1 0.9205 -10.5921 -1.4352 38 1 -1.4132 -10.8488 -0.7319 39 1 -1.7601 -9.1555 -1.1594 40 1 -0.8408 -11.3182 -3.1078 41 1 -2.5095 -10.7217 -2.9434 42 1 -1.7337 -8.4292 -3.5269 43 1 -1.3677 -9.5933 -4.8233 44 1 0.1462 -7.7908 -5.4940 45 1 0.2933 -6.8221 -4.0080 46 1 3.5949 -6.5463 -5.5805 47 1 0.3579 -4.7884 -0.2372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605586423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = -115.946788 kcal Electronic energy + Delta-G solvation = -31374.915808 eV Core-core repulsion = 27102.915352 eV Total energy + Delta-G solvation = -4272.000456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14581 -39.40074 -38.88927 -37.59829 -36.38418 -35.73586 -33.63955 -32.95540 -32.26136 -31.61057 -29.15736 -28.63466 -27.11655 -25.28847 -24.97718 -23.23602 -21.94594 -21.48080 -20.75837 -20.56282 -19.10102 -17.84092 -17.58170 -17.08062 -16.91497 -16.47994 -16.09214 -15.44396 -15.25504 -14.96956 -14.74459 -14.57847 -14.33941 -14.15389 -13.93485 -13.59474 -13.54687 -13.28174 -13.20913 -12.71559 -12.50071 -12.48605 -12.35553 -12.26004 -11.79061 -11.51334 -11.42966 -11.32468 -11.22405 -11.07623 -11.04610 -10.96298 -10.77791 -10.69728 -10.56833 -10.41205 -10.25401 -9.29534 -9.19380 -8.77875 -8.68248 -8.00412 -7.15712 -6.38933 -3.97846 2.13547 2.43507 2.45470 2.89557 2.95992 3.16582 3.18499 3.20579 3.35503 4.01441 4.25703 4.43550 4.55015 4.57964 4.73541 4.81596 4.91736 4.98048 5.03355 5.12747 5.21019 5.24429 5.25646 5.34916 5.43277 5.49608 5.52748 5.61579 5.66722 5.70475 5.72684 5.77741 5.79851 5.85708 5.99878 6.04841 6.23390 6.39060 6.45745 6.71371 6.87970 6.97381 7.12876 7.31151 7.32698 7.43176 7.49604 7.88594 8.06149 8.24221 8.27704 9.06914 9.77939 10.79349 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.002829 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.944836 B = 9896.592115 C =10190.224158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.032 4.032 15 C -0.093 4.093 16 C 0.528 3.472 17 O -0.520 6.520 18 N -0.609 5.609 19 C 0.108 3.892 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.132 4.132 23 C 0.159 3.841 24 H 0.082 0.918 25 C -0.112 4.112 26 C 0.518 3.482 27 O -0.542 6.542 28 O -0.517 6.517 29 C -0.174 4.174 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.130 0.870 46 H 0.403 0.597 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -21.551 -5.529 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.213 4.213 14 C -0.033 4.033 15 C -0.132 4.132 16 C 0.318 3.682 17 O -0.397 6.397 18 N -0.344 5.344 19 C -0.015 4.015 20 C -0.176 4.176 21 C -0.156 4.156 22 C -0.170 4.170 23 C 0.056 3.944 24 H 0.100 0.900 25 C -0.149 4.149 26 C 0.363 3.637 27 O -0.433 6.433 28 O -0.328 6.328 29 C -0.194 4.194 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.148 0.852 46 H 0.261 0.739 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.205 -21.134 -5.778 22.020 hybrid contribution 1.190 0.815 -0.020 1.443 sum -1.015 -20.319 -5.798 21.154 Atomic orbital electron populations 1.70031 1.05918 1.27618 1.46462 1.25259 0.95824 0.98726 0.96663 0.85803 0.78701 0.79897 0.79151 1.19525 1.20315 1.19565 1.21261 0.91733 0.80883 1.52839 0.89228 1.83970 1.34219 1.11353 1.78854 1.19254 0.90224 0.87947 0.92396 1.21168 0.93855 0.98892 1.11021 1.20672 0.98334 0.92297 0.97990 1.20348 0.93336 0.96948 1.10701 1.18643 0.93195 0.91852 0.99560 1.20639 1.02379 0.97161 0.93052 1.20700 0.76081 0.79753 0.91643 1.90532 1.49702 1.48518 1.50976 1.48035 1.60334 1.18681 1.07333 1.21770 0.95640 0.91927 0.92201 1.21953 0.96139 1.02177 0.97327 1.21492 1.01711 0.97809 0.94554 1.22006 0.95065 0.99516 1.00446 1.21033 0.95523 0.97017 0.80812 0.89979 1.21719 0.90206 1.01637 1.01345 1.22585 0.91936 0.76887 0.72269 1.90630 1.61019 1.42959 1.48728 1.84496 1.30364 1.49464 1.68438 1.19904 0.98946 0.89918 1.10584 0.92083 0.85674 0.87571 0.88077 0.88296 0.88449 0.89243 0.91175 0.90523 0.91061 0.91664 0.91375 0.90867 0.90441 0.89340 0.85214 0.73928 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 12 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.19 -3.66 9.70 -39.53 -0.38 -4.04 16 14 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 15 C -0.09 -1.28 4.18 -29.03 -0.12 -1.41 16 16 C 0.53 7.85 7.02 -10.98 -0.08 7.77 16 17 O -0.52 -9.56 9.56 -19.28 -0.18 -9.74 16 18 N -0.61 -6.91 2.94 -165.23 -0.49 -7.40 16 19 C 0.11 0.84 6.35 -3.71 -0.02 0.82 16 20 C -0.14 -0.86 6.08 -26.61 -0.16 -1.02 16 21 C -0.12 -0.72 5.88 -26.69 -0.16 -0.88 16 22 C -0.13 -0.99 5.31 -26.61 -0.14 -1.13 16 23 C 0.16 1.67 2.48 -67.60 -0.17 1.51 16 24 H 0.08 0.90 7.49 -51.93 -0.39 0.52 16 25 C -0.11 -1.39 4.85 -27.88 -0.14 -1.52 16 26 C 0.52 7.92 5.47 36.01 0.20 8.12 16 27 O -0.54 -9.43 15.68 -25.64 -0.40 -9.83 16 28 O -0.52 -7.48 13.42 -42.27 -0.57 -8.05 16 29 C -0.17 -3.84 9.65 -39.40 -0.38 -4.22 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.10 1.16 7.83 -51.92 -0.41 0.75 16 35 H 0.10 1.11 7.69 -51.93 -0.40 0.71 16 36 H 0.09 0.61 5.93 -51.93 -0.31 0.30 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 45 H 0.13 1.91 6.04 -51.93 -0.31 1.60 16 46 H 0.40 4.34 9.10 45.56 0.41 4.75 16 47 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -36.76 380.52 -8.75 -45.51 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.75 Total: 9.02 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.83 Total: -10.88 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.27 Total: -32.47 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.15 Total: -32.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.76 -8.75 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.437 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds