Wall clock time and date at job start Wed Apr 1 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48507 * 109.47151 * 239.99955 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47302 * 120.00639 * 3 2 1 7 7 C 1.38665 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99719 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00334 * 174.96411 * 9 7 2 11 11 C 1.38899 * 120.06203 * 5.46877 * 10 9 7 12 12 C 1.38081 * 119.92966 * 179.97438 * 11 10 9 13 13 C 1.38329 * 120.06429 * 359.74760 * 12 11 10 14 14 C 1.38279 * 120.13874 * 0.50898 * 13 12 11 15 15 C 1.50706 * 119.96175 * 179.76608 * 14 13 12 16 16 C 1.50697 * 109.46941 * 269.72153 * 15 14 13 17 17 O 1.21278 * 120.00139 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99695 * 180.02562 * 16 15 14 19 19 C 1.46928 * 120.63133 * 355.12264 * 18 16 15 20 20 C 1.53184 * 108.77549 * 126.36929 * 19 18 16 21 21 C 1.53046 * 109.31062 * 54.63611 * 20 19 18 22 22 C 1.53040 * 109.53976 * 298.63432 * 21 20 19 23 23 C 1.46922 * 120.62881 * 175.10523 * 18 16 15 24 24 H 1.08998 * 109.59074 * 113.69947 * 23 18 16 25 25 C 1.52997 * 109.59061 * 353.41290 * 23 18 16 26 26 C 1.50704 * 109.46971 * 76.89625 * 25 23 18 27 27 O 1.20823 * 119.99863 * 0.02562 * 26 25 23 28 28 O 1.34223 * 119.99825 * 180.02562 * 26 25 23 29 29 C 1.38118 * 120.06933 * 359.49368 * 14 13 12 30 30 H 0.97007 * 119.99864 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.04115 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.97066 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.93232 * 180.27672 * 13 12 11 34 34 H 1.09007 * 109.46674 * 149.72371 * 15 14 13 35 35 H 1.09000 * 109.47136 * 29.72783 * 15 14 13 36 36 H 1.09004 * 109.58539 * 6.58516 * 19 18 16 37 37 H 1.09001 * 109.58468 * 246.15914 * 19 18 16 38 38 H 1.08995 * 109.49882 * 174.58633 * 20 19 18 39 39 H 1.09003 * 109.50394 * 294.68873 * 20 19 18 40 40 H 1.08999 * 109.45948 * 58.65612 * 21 20 19 41 41 H 1.09001 * 109.45733 * 178.61245 * 21 20 19 42 42 H 1.09005 * 109.49414 * 301.41532 * 22 21 20 43 43 H 1.08998 * 109.52339 * 181.33175 * 22 21 20 44 44 H 1.08993 * 109.47611 * 196.90174 * 25 23 18 45 45 H 1.09002 * 109.47002 * 316.90448 * 25 23 18 46 46 H 0.96708 * 116.99888 * 180.02562 * 28 26 25 47 47 H 1.07997 * 120.03577 * 180.23538 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1072 11 6 3.4572 -3.4394 -0.0958 12 6 4.2024 -4.5968 -0.2039 13 6 3.5684 -5.8210 -0.3184 14 6 2.1874 -5.8887 -0.3355 15 6 1.5008 -7.2240 -0.4656 16 6 1.2769 -7.5336 -1.9234 17 8 1.6394 -6.7477 -2.7729 18 7 0.6736 -8.6840 -2.2829 19 6 0.3249 -9.6936 -1.2740 20 6 -1.1629 -10.0324 -1.4093 21 6 -1.4564 -10.4563 -2.8503 22 6 -1.1363 -9.2993 -3.7995 23 6 0.3519 -8.9521 -3.6912 24 1 0.9514 -9.7885 -4.0502 25 6 0.6508 -7.7089 -4.5314 26 6 2.1375 -7.5969 -4.7514 27 8 2.8815 -8.4266 -4.2846 28 8 2.6351 -6.5755 -5.4660 29 6 1.4365 -4.7345 -0.2277 30 1 -0.4850 0.8401 0.0004 31 1 3.9528 -2.4845 -0.0015 32 1 5.2812 -4.5468 -0.1955 33 1 4.1533 -6.7254 -0.3984 34 1 0.5412 -7.1909 0.0504 35 1 2.1258 -7.9987 -0.0214 36 1 0.5201 -9.2970 -0.2776 37 1 0.9205 -10.5921 -1.4352 38 1 -1.4132 -10.8488 -0.7319 39 1 -1.7601 -9.1555 -1.1594 40 1 -0.8408 -11.3182 -3.1078 41 1 -2.5095 -10.7217 -2.9434 42 1 -1.7337 -8.4292 -3.5269 43 1 -1.3677 -9.5933 -4.8233 44 1 0.1462 -7.7908 -5.4940 45 1 0.2933 -6.8221 -4.0080 46 1 3.5949 -6.5463 -5.5805 47 1 0.3579 -4.7884 -0.2372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605586423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:42 Heat of formation + Delta-G solvation = -139.696688 kcal Electronic energy + Delta-G solvation = -31375.945681 eV Core-core repulsion = 27102.915352 eV Total energy + Delta-G solvation = -4273.030329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16667 -40.84321 -40.33660 -38.72347 -37.96306 -36.91405 -34.67033 -34.27127 -33.71428 -32.96593 -30.88318 -29.46811 -28.52611 -27.26431 -25.83641 -24.04928 -23.36679 -23.01646 -21.96330 -21.52976 -20.16674 -19.43630 -18.98586 -18.74112 -18.03325 -17.52924 -17.10128 -16.82713 -16.58418 -16.31917 -16.16723 -16.00155 -15.51741 -15.34203 -15.03150 -14.88684 -14.81028 -14.43946 -14.29772 -14.09661 -13.96339 -13.64131 -13.52240 -13.31337 -13.15998 -12.96496 -12.79083 -12.47774 -12.38555 -12.29575 -12.22420 -12.14562 -12.09856 -11.88878 -11.64564 -11.49454 -11.41443 -11.21666 -10.80501 -10.31237 -9.64811 -9.55424 -8.99123 -8.47125 -6.15642 0.50496 0.73933 1.32220 1.33445 1.44595 1.49903 1.83893 1.97879 2.17570 2.37194 2.82363 3.13464 3.42726 3.47982 3.77889 3.85169 3.96723 4.01078 4.08301 4.13185 4.20410 4.28043 4.28968 4.37637 4.40650 4.52578 4.55222 4.59144 4.65850 4.71428 4.77572 4.84164 4.98631 5.00065 5.03051 5.10918 5.12092 5.21703 5.25862 5.28974 5.50164 5.62557 5.64124 5.71130 5.74034 5.80526 6.02147 6.19732 6.39495 6.97298 7.17199 7.18848 7.78203 8.76049 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.002829 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.944836 B = 9896.592115 C =10190.224158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.115 3.885 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.182 4.182 14 C -0.021 4.021 15 C -0.091 4.091 16 C 0.519 3.481 17 O -0.565 6.565 18 N -0.602 5.602 19 C 0.098 3.902 20 C -0.134 4.134 21 C -0.117 4.117 22 C -0.126 4.126 23 C 0.159 3.841 24 H 0.081 0.919 25 C -0.110 4.110 26 C 0.514 3.486 27 O -0.567 6.567 28 O -0.527 6.527 29 C -0.188 4.188 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.415 0.585 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -24.441 -5.445 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.265 4.265 12 C -0.091 4.091 13 C -0.201 4.201 14 C -0.021 4.021 15 C -0.130 4.130 16 C 0.309 3.691 17 O -0.447 6.447 18 N -0.335 5.335 19 C -0.024 4.024 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.164 4.164 23 C 0.056 3.944 24 H 0.099 0.901 25 C -0.148 4.148 26 C 0.361 3.639 27 O -0.461 6.461 28 O -0.339 6.339 29 C -0.207 4.207 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.274 0.726 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.306 -24.111 -5.687 24.807 hybrid contribution 0.998 1.372 -0.100 1.700 sum -0.308 -22.739 -5.787 23.466 Atomic orbital electron populations 1.70178 1.07967 1.28826 1.48868 1.26580 0.96881 1.02643 0.95823 0.84667 0.77442 0.74327 0.79884 1.18452 1.19363 1.17998 1.21771 0.92455 0.81541 1.53444 0.88383 1.83929 1.35836 1.12500 1.81657 1.19834 0.91542 0.87928 0.94187 1.21270 0.93220 1.00018 1.11965 1.21079 1.00071 0.91478 0.96469 1.20878 0.93675 0.97833 1.07671 1.19111 0.93505 0.92963 0.96568 1.20732 1.03807 0.95085 0.93370 1.20825 0.76331 0.80432 0.91471 1.90534 1.52002 1.50159 1.51996 1.48130 1.58708 1.18127 1.08528 1.22112 0.97003 0.91442 0.91799 1.21948 0.94668 1.02586 0.98023 1.21516 1.02740 0.97241 0.93911 1.21997 0.92430 0.99854 1.02160 1.21160 0.97481 0.95761 0.80033 0.90082 1.21767 0.88559 1.01592 1.02878 1.23146 0.92961 0.76327 0.71507 1.90591 1.61858 1.43841 1.49787 1.84489 1.31669 1.49430 1.68299 1.20149 0.99214 0.90225 1.11132 0.91824 0.86444 0.84049 0.84607 0.86086 0.84932 0.88009 0.89841 0.88236 0.92052 0.90812 0.90035 0.91860 0.88611 0.86656 0.87683 0.72556 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.84 13.67 21.62 0.30 -57.55 16 2 C -0.02 -1.28 5.49 84.84 0.47 -0.82 16 3 Si 1.02 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.42 -25.26 9.49 67.92 0.64 -24.62 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.63 9.76 -22.69 -0.22 -14.85 16 10 C 0.12 6.11 6.65 22.58 0.15 6.26 16 11 C -0.25 -11.54 9.17 22.39 0.21 -11.33 16 12 C -0.07 -2.78 10.04 22.25 0.22 -2.55 16 13 C -0.18 -6.37 9.70 22.30 0.22 -6.16 16 14 C -0.02 -0.75 4.37 -19.88 -0.09 -0.84 16 15 C -0.09 -2.28 4.18 29.10 0.12 -2.16 16 16 C 0.52 14.64 7.02 87.66 0.62 15.25 16 17 O -0.57 -20.71 9.56 20.73 0.20 -20.51 16 18 N -0.60 -12.36 2.94 -795.04 -2.34 -14.69 16 19 C 0.10 1.19 6.35 86.36 0.55 1.74 16 20 C -0.13 -1.22 6.08 30.67 0.19 -1.04 16 21 C -0.12 -1.03 5.88 30.62 0.18 -0.85 16 22 C -0.13 -1.59 5.31 30.67 0.16 -1.43 16 23 C 0.16 3.05 2.48 44.98 0.11 3.16 16 24 H 0.08 1.62 7.49 -2.39 -0.02 1.60 16 25 C -0.11 -2.69 4.85 29.85 0.14 -2.54 16 26 C 0.51 15.57 5.47 71.24 0.39 15.96 16 27 O -0.57 -19.34 15.68 28.57 0.45 -18.89 16 28 O -0.53 -15.34 13.42 -48.45 -0.65 -15.99 16 29 C -0.19 -8.53 9.65 22.39 0.22 -8.31 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 32 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.12 2.52 7.83 -2.38 -0.02 2.50 16 35 H 0.13 2.41 7.69 -2.39 -0.02 2.39 16 36 H 0.10 0.98 5.93 -2.38 -0.01 0.97 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.12 2.06 8.04 -2.39 -0.02 2.04 16 45 H 0.11 3.18 6.04 -2.39 -0.01 3.16 16 46 H 0.41 9.01 9.10 -74.05 -0.67 8.34 16 47 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -86.41 380.52 4.59 -81.82 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.34 Total: 34.68 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.50 Total: -20.27 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.04 Total: -72.24 kcal Atomic # 8 Polarization: -70.02 SS G_CDS: -0.23 Total: -70.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -86.41 4.59 -81.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.877 kcal (2) G-P(sol) polarization free energy of solvation -86.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds